Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0001489

Physical Location & Seq

Genomic Coordinates Reverse (-)

17036647 .. 17044272

Gene Structure 7626 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G186800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGGCTGCCTCTGGTTCGAAGCCCCATCCTCCCTCTAGTTCCAAACCTCCCAAAAACCCCATAACCCTCAAACCCACAAATGAAACCCAAACTCCAAACCCTAACCCTTCCACCTCCAACATCCCTCCTGTCCCACCCTCCCAAGAAGAAATCGCTCTCTCAGGCGCCTCCCAGCTCACGCGCCTGGAGGTCCTCCGCCGCCGTTCCTACTTCTTAAGGCAGCTCAGAAAATTCTACCAATCCAAATACTGGGCCTTCATGGAGGAGGTCAAGAAGAAGCACAGGGAGTTCTACTGGAACTTCGGTGTGAGCCCTTTCAAAGATGAGCACAAGAGCGATAGAGACGCTACTGGGAATGCTGAAGGCACTGATGAGAACAATAACAACATCAACAGCAATTTCAACAACAATAATGGTGGTGCTGCGATTGCTCGGACCGACGTCGATGCGAAAAAGAAACTGCAATGCTCTTATCATCAGTGTAAGACGAAGGCCATGCCGTTGACGAGCTTTTGTCACCTCCATATTCTATCGGATTCGAAGCAGAAGCTCTATAAGCCTTGTGGGTTTGTTATCAAGAGTGCTCATACAGGACCTCTAACCTGTGGGAAGCCAATACTGAGATCCACTGTTCCTTCTCTTTGTACTCATCACTTCCAAGTGGCTCAGAAGGCTATCAAAAAGGCCTTGAAGAAGGCAGGCCTTAATGGGCCATCAACAAATAAGCTTGCTCCAAAGTTCCATGTCATAGTAGCAGAATATGTACGCCAAATTCAGGCCAAACGAAGAGCTGCACAAAGGGCAAAGGGAAAGAAAGTCGCAATTAAGGAAGAAACCTCTGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3Hc3H

Protein Analysis

282

Amino Acids

31.36

Weight (kDa)

9.98

Isoelectric Point (pI)

47.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001489)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05860 AT1G05860 AT1G05860 AT2G31600 AT2G31600 AT2G31600 AT2G31600 AT2G31600 AT2G31600 AT3G53860
fragaria_vesca	FvH4_2g08280 FvH4_2g08280 FvH4_2g08280 FvH4_4g11360
malus_domestica	MD04G1037400.v1.1 MD04G1037500.v1.1 MD04G1188100.v1.1
prunus_persica	Prupe.1G186800_v2.0.a1 Prupe.1G186800_v2.0.a1 Prupe.1G186800_v2.0.a1 Prupe.1G186800_v2.0.a1
pyrus_communis	pycom04g03050 pycom04g03060
rosa_chinensis	RchiOBHm_Chr4g0407911 RchiOBHm_Chr6g0263161 RchiOBHm_Chr6g0273581
rosa_laevigata	RLG00000008679 RLG00000008682 RLG00000014367
rosa_multiflora	Rmu_co8062746.1_g000001 Rmu_sc0002073.1_g000013 Rmu_sc0002481.1_g000059 Rmu_sc0041685.1_g000001
rosa_roxburghii	Rroxscaffold_176G00430970 Rroxscaffold_5G00352520 Rroxscaffold_7G00204610
rosa_rugosa	Rorug04G0083000 Rorug04G0083100 Rorug06G0004000
rosa_samantha	Rh4AG147300 Rh4BG145000 Rh4CG154200 Rh4DG141400 Rh6AG123100 Rh6BG118100 Rh6CG116300 Rh6DG104800 Rh6DG186100
rosa_wichuraiana	Rw0G018640 Rw4G012090 Rw6G010580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	444
AccB1I	GGYRCC	1 cut(s)	164
AccB7I	CCANNNNNTGG	1 cut(s)	249
AccII	CGCG	1 cut(s)	181
AciI	CCGC	2 cut(s)	196, 199
AclWI	GGATC	1 cut(s)	618
AcsI	RAATTY	2 cut(s)	230, 771
AcuI	CTGAAG	1 cut(s)	381
AcyI	GRCGYC	2 cut(s)	165, 441
AfaI	GTAC	2 cut(s)	646, 765
AfiI	CCNNNNNNNGG	2 cut(s)	249, 775
AflII	CTTAAG	1 cut(s)	214
AgsI	TTSAA	3 cut(s)	319, 403, 691
AjnI	CCWGG	1 cut(s)	183
AluBI	AGCT	6 cut(s)	175, 223, 510, 550, 727, 791
AluI	AGCT	6 cut(s)	175, 223, 510, 550, 727, 791
Alw21I	GWGCWC	2 cut(s)	330, 586
Alw26I	GTCTC	1 cut(s)	336
AlwI	GGATC	1 cut(s)	618
AoxI	GGCC	6 cut(s)	252, 492, 684, 700, 710, 777
ApeKI	GCWGC	4 cut(s)	5, 220, 422, 791
ApoI	RAATTY	2 cut(s)	230, 771
AspLEI	GCGC	2 cut(s)	167, 183
AspS9I	GGNCC	5 cut(s)	190, 252, 435, 593, 710
AsuHPI	GGTGA	1 cut(s)	509
AsuII	TTCGAA	2 cut(s)	17, 539
AvaII	GGWCC	3 cut(s)	190, 435, 593
BanI	GGYRCC	1 cut(s)	164
BanII	GRGCYC	1 cut(s)	314
Bbv12I	GWGCWC	2 cut(s)	330, 586
BbvI	GCAGC	3 cut(s)	232, 409, 778
BccI	CCATC	2 cut(s)	33, 721
BceAI	ACGGC	2 cut(s)	186, 484
BcgI	CGANNNNNNTGC	4 cut(s)	428, 462, 478, 512
BciT130I	CCWGG	1 cut(s)	185
BcoDI	GTCTC	1 cut(s)	336
BfaI	CTAG	1 cut(s)	36
BfoI	RGCGCY	1 cut(s)	168
BfrI	CTTAAG	1 cut(s)	214
BisI	GCNGC	5 cut(s)	6, 199, 221, 423, 792
BlsI	GCNGC	5 cut(s)	7, 200, 222, 424, 793
Bme1390I	CCNGG	1 cut(s)	185
Bme18I	GGWCC	3 cut(s)	190, 435, 593
BmgT120I	GGNCC	5 cut(s)	190, 252, 435, 593, 710
BmiI	GGNNCC	1 cut(s)	166
BmrFI	CCNGG	1 cut(s)	185
BmrI	ACTGGG	2 cut(s)	259, 360
BmsI	GCATC	1 cut(s)	436
BmuI	ACTGGG	2 cut(s)	259, 360
BoxI	GACNNNNGTC	1 cut(s)	440
BpmI	CTGGAG	1 cut(s)	206
Bpu14I	TTCGAA	2 cut(s)	17, 539
BsaHI	GRCGYC	2 cut(s)	165, 441
BsaXI	ACNNNNNCTCC	2 cut(s)	76, 106
Bsc4I	CCNNNNNNNGG	2 cut(s)	249, 775
Bse1I	ACTGG	3 cut(s)	254, 299, 355
Bse3DI	GCAATG	1 cut(s)	470
BseBI	CCWGG	1 cut(s)	185
BseGI	GGATG	2 cut(s)	25, 120
BseLI	CCNNNNNNNGG	2 cut(s)	249, 775
BseMI	GCAATG	1 cut(s)	470
BseMII	CTCAG	4 cut(s)	174, 238, 611, 680
BseNI	ACTGG	3 cut(s)	254, 299, 355
BseRI	GAGGAG	1 cut(s)	278
BseXI	GCAGC	3 cut(s)	232, 409, 778
BseYI	CCCAGC	1 cut(s)	171
BsgI	GTGCAG	1 cut(s)	777
Bsh1236I	CGCG	1 cut(s)	181
BshFI	GGCC	6 cut(s)	254, 494, 686, 702, 712, 779
BshNI	GGYRCC	1 cut(s)	164
BsiHKAI	GWGCWC	2 cut(s)	330, 586
BslFI	GGGAC	1 cut(s)	116
BslI	CCNNNNNNNGG	2 cut(s)	249, 775
BsmAI	GTCTC	1 cut(s)	336
BsmBI	CGTCTC	1 cut(s)	336
BsmFI	GGGAC	1 cut(s)	116
BsmI	GAATGC	1 cut(s)	361
BsnI	GGCC	6 cut(s)	254, 494, 686, 702, 712, 779
Bsp119I	TTCGAA	2 cut(s)	17, 539
Bsp1286I	GDGCHC	3 cut(s)	314, 330, 586
Bsp143I	GATC	1 cut(s)	623
BspACI	CCGC	2 cut(s)	196, 199
BspANI	GGCC	6 cut(s)	254, 494, 686, 702, 712, 779
BspCNI	CTCAG	4 cut(s)	173, 237, 612, 679
BspFNI	CGCG	1 cut(s)	181
BspLI	GGNNCC	1 cut(s)	166
BspPI	GGATC	1 cut(s)	618
BspQI	GCTCTTC	1 cut(s)	781
BspT104I	TTCGAA	2 cut(s)	17, 539
BspT107I	GGYRCC	1 cut(s)	164
BspTI	CTTAAG	1 cut(s)	214
BsrDI	GCAATG	1 cut(s)	470
BsrI	ACTGG	3 cut(s)	254, 299, 355
BssMI	GATC	1 cut(s)	623
BssNI	GRCGYC	2 cut(s)	165, 441
Bst2UI	CCWGG	1 cut(s)	185
Bst4CI	ACNGT	1 cut(s)	631
Bst6I	CTCTTC	1 cut(s)	781
BstACI	GRCGYC	2 cut(s)	165, 441
BstAFI	CTTAAG	1 cut(s)	214
BstBI	TTCGAA	2 cut(s)	17, 539
BstC8I	GCNNGC	2 cut(s)	700, 729
BstDEI	CTNAG	4 cut(s)	160, 224, 620, 666
BstF5I	GGATG	2 cut(s)	25, 120
BstFNI	CGCG	1 cut(s)	181
BstH2I	RGCGCY	1 cut(s)	168
BstHHI	GCGC	2 cut(s)	167, 183
BstKTI	GATC	1 cut(s)	626
BstMAI	GTCTC	1 cut(s)	336
BstMBI	GATC	1 cut(s)	623
BstMWI	GCNNNNNNNGC	4 cut(s)	428, 556, 671, 800
BstNI	CCWGG	1 cut(s)	185
BstPAI	GACNNNNGTC	1 cut(s)	440
BstSCI	CCNGG	1 cut(s)	183
BstUI	CGCG	1 cut(s)	181
BstV1I	GCAGC	3 cut(s)	232, 409, 778
BstX2I	RGATCY	1 cut(s)	623
BstYI	RGATCY	1 cut(s)	623
BsuRI	GGCC	6 cut(s)	254, 494, 686, 702, 712, 779
BtsCI	GGATG	2 cut(s)	25, 120
BtsIMutI	CAGTG	3 cut(s)	366, 485, 627
Cac8I	GCNNGC	2 cut(s)	700, 729
CfoI	GCGC	2 cut(s)	167, 183
Cfr13I	GGNCC	5 cut(s)	190, 252, 435, 593, 710
CpoI	CGGWCCG	1 cut(s)	435
CseI	GACGC	1 cut(s)	353
Csp6I	GTAC	2 cut(s)	645, 764
CspCI	CAANNNNNGTGG	2 cut(s)	397, 432
CspI	CGGWCCG	1 cut(s)	435
CviAII	CATG	3 cut(s)	259, 496, 743
CviQI	GTAC	2 cut(s)	645, 764
DdeI	CTNAG	4 cut(s)	160, 224, 620, 666
DinI	GGCGCC	1 cut(s)	166
DpnI	GATC	1 cut(s)	625
DpnII	GATC	1 cut(s)	623
Eam1104I	CTCTTC	1 cut(s)	781
EarI	CTCTTC	1 cut(s)	781
EciI	GGCGGA	1 cut(s)	185
Eco147I	AGGCCT	2 cut(s)	686, 702
Eco24I	GRGCYC	1 cut(s)	314
Eco47I	GGWCC	3 cut(s)	190, 435, 593
Eco57I	CTGAAG	1 cut(s)	381
EcoO109I	RGGNCCY	2 cut(s)	190, 593
EcoRII	CCWGG	1 cut(s)	183
EcoT38I	GRGCYC	1 cut(s)	314
EgeI	GGCGCC	1 cut(s)	166
EheI	GGCGCC	1 cut(s)	166
Esp3I	CGTCTC	1 cut(s)	336
FaeI	CATG	3 cut(s)	262, 499, 746
FaiI	YATR	9 cut(s)	62, 260, 497, 525, 555, 588, 744, 749, 762
FaqI	GGGAC	1 cut(s)	116
FatI	CATG	3 cut(s)	258, 495, 742
Fnu4HI	GCNGC	5 cut(s)	6, 199, 221, 423, 792
FokI	GGATG	2 cut(s)	12, 107
FriOI	GRGCYC	1 cut(s)	314
Fsp4HI	GCNGC	5 cut(s)	6, 199, 221, 423, 792
FspBI	CTAG	1 cut(s)	36
GlaI	GCGC	2 cut(s)	166, 182
GluI	GCNGC	5 cut(s)	6, 199, 221, 423, 792
GsaI	CCCAGC	1 cut(s)	175
GsuI	CTGGAG	1 cut(s)	206
HaeII	RGCGCY	1 cut(s)	168
HaeIII	GGCC	6 cut(s)	254, 494, 686, 702, 712, 779
HgaI	GACGC	1 cut(s)	353
HhaI	GCGC	2 cut(s)	167, 183
Hin1I	GRCGYC	2 cut(s)	165, 441
Hin1II	CATG	3 cut(s)	262, 499, 746
Hin6I	GCGC	2 cut(s)	165, 181
HinP1I	GCGC	2 cut(s)	165, 181
HincII	GTYRAC	1 cut(s)	504
HindII	GTYRAC	1 cut(s)	504
HindIII	AAGCTT	1 cut(s)	725
HinfI	GANTC	1 cut(s)	536
HphI	GGTGA	1 cut(s)	509
Hpy166II	GTNNAC	1 cut(s)	504
Hpy188I	TCNGA	5 cut(s)	227, 435, 535, 669, 841
Hpy188III	TCNNGA	2 cut(s)	271, 577
Hpy8I	GTNNAC	1 cut(s)	504
Hpy99I	CGWCG	2 cut(s)	443, 446
HpyAV	CCTTC	7 cut(s)	117, 265, 356, 484, 645, 664, 688
HpyCH4III	ACNGT	1 cut(s)	631
HpyCH4IV	ACGT	1 cut(s)	441
HpyCH4V	TGCA	2 cut(s)	463, 794
HpyF10VI	GCNNNNNNNGC	4 cut(s)	428, 556, 671, 800
HpyF3I	CTNAG	4 cut(s)	160, 224, 620, 666
HpySE526I	ACGT	1 cut(s)	441
Hsp92I	GRCGYC	2 cut(s)	165, 441
Hsp92II	CATG	3 cut(s)	262, 499, 746
HspAI	GCGC	2 cut(s)	165, 181
KasI	GGCGCC	1 cut(s)	164
Kzo9I	GATC	1 cut(s)	623
LguI	GCTCTTC	1 cut(s)	781
LmnI	GCTCC	1 cut(s)	736
Lsp1109I	GCAGC	3 cut(s)	232, 409, 778
LweI	GCATC	1 cut(s)	436
MaeI	CTAG	1 cut(s)	36
MaeII	ACGT	1 cut(s)	441
MaeIII	GTNAC	1 cut(s)	515
MalI	GATC	1 cut(s)	625
MboI	GATC	1 cut(s)	623
MboII	GAAGA	5 cut(s)	158, 286, 703, 798, 842
MflI	RGATCY	1 cut(s)	623
MhlI	GDGCHC	3 cut(s)	314, 330, 586
MluCI	AATT	4 cut(s)	230, 397, 771, 822
Mly113I	GGCGCC	1 cut(s)	165
MmeI	TCCRAC	1 cut(s)	141
MseI	TTAA	3 cut(s)	215, 705, 825
MspCI	CTTAAG	1 cut(s)	214
MspR9I	CCNGG	1 cut(s)	185
Mva1269I	GAATGC	1 cut(s)	361
MvaI	CCWGG	1 cut(s)	185
MvnI	CGCG	1 cut(s)	181
MwoI	GCNNNNNNNGC	4 cut(s)	428, 556, 671, 800
NarI	GGCGCC	1 cut(s)	165
NdeII	GATC	1 cut(s)	623
NlaIII	CATG	3 cut(s)	262, 499, 746
NlaIV	GGNNCC	1 cut(s)	166
NmuCI	GTSAC	1 cut(s)	515
NspV	TTCGAA	2 cut(s)	17, 539
PceI	AGGCCT	2 cut(s)	686, 702
PciSI	GCTCTTC	1 cut(s)	781
PctI	GAATGC	1 cut(s)	361
PfeI	GAWTC	1 cut(s)	536
PflMI	CCANNNNNTGG	1 cut(s)	249
PkrI	GCNGC	5 cut(s)	7, 200, 222, 424, 793
PluTI	GGCGCC	1 cut(s)	168
PpuMI	RGGWCCY	2 cut(s)	190, 593
PshAI	GACNNNNGTC	1 cut(s)	440
Psp5II	RGGWCCY	2 cut(s)	190, 593
Psp6I	CCWGG	1 cut(s)	183
PspFI	CCCAGC	1 cut(s)	171
PspGI	CCWGG	1 cut(s)	183
PspN4I	GGNNCC	1 cut(s)	166
PspPI	GGNCC	5 cut(s)	190, 252, 435, 593, 710
PspPPI	RGGWCCY	2 cut(s)	190, 593
PsuI	RGATCY	1 cut(s)	623
RsaI	GTAC	2 cut(s)	646, 765
RsaNI	GTAC	2 cut(s)	645, 764
Rsr2I	CGGWCCG	1 cut(s)	435
RsrII	CGGWCCG	1 cut(s)	435
SapI	GCTCTTC	1 cut(s)	781
SaqAI	TTAA	3 cut(s)	215, 705, 825
SatI	GCNGC	5 cut(s)	6, 199, 221, 423, 792
Sau3AI	GATC	1 cut(s)	623
Sau96I	GGNCC	5 cut(s)	190, 252, 435, 593, 710
ScrFI	CCNGG	1 cut(s)	185
SduI	GDGCHC	3 cut(s)	314, 330, 586
SfaNI	GCATC	1 cut(s)	436
SfoI	GGCGCC	1 cut(s)	166
SfuI	TTCGAA	2 cut(s)	17, 539
SinI	GGWCC	3 cut(s)	190, 435, 593
SmlI	CTYRAG	1 cut(s)	214
SmoI	CTYRAG	1 cut(s)	214
Sse9I	AATT	4 cut(s)	230, 397, 771, 822
SseBI	AGGCCT	2 cut(s)	686, 702
SsiI	CCGC	2 cut(s)	196, 199
SspDI	GGCGCC	1 cut(s)	164
SspMI	CTAG	1 cut(s)	36
StuI	AGGCCT	2 cut(s)	686, 702
StyD4I	CCNGG	1 cut(s)	183
TaaI	ACNGT	1 cut(s)	631
TaiI	ACGT	1 cut(s)	444
TaqI	TCGA	3 cut(s)	17, 444, 539
TaqII	GACCGA	1 cut(s)	452
TasI	AATT	4 cut(s)	230, 397, 771, 822
TatI	WGTACW	1 cut(s)	644
TauI	GCSGC	1 cut(s)	201
TfiI	GAWTC	1 cut(s)	536
Tru1I	TTAA	3 cut(s)	215, 705, 825
Tru9I	TTAA	3 cut(s)	215, 705, 825
TscAI	CASTG	3 cut(s)	373, 485, 634
TseFI	GTSAC	1 cut(s)	515
TseI	GCWGC	4 cut(s)	5, 220, 422, 791
Tsp45I	GTSAC	1 cut(s)	515
TspDTI	ATGAA	2 cut(s)	96, 247
TspRI	CASTG	3 cut(s)	373, 485, 634
Van91I	CCANNNNNTGG	1 cut(s)	249
Vha464I	CTTAAG	1 cut(s)	214
VpaK11BI	GGWCC	3 cut(s)	190, 435, 593
XapI	RAATTY	2 cut(s)	230, 771
XspI	CTAG	1 cut(s)	36
ZraI	GACGTC	1 cut(s)	442

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.