RLG00000008682

INO80 complex subunit D-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0001489
Physical Location & Seq
Reverse (-)
34889231 .. 34891884
2654 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008682

Sequence Viewer

Length: 789 bp
ATGGCTGCCTCTGGTTCCAAGAACAACCACAACCACCCTCCTCCCTCTTCTTCCAAGCCTCCCAAGAACCAAATAGTCATCGCCGACCCACAAATCCCAAACCCCAACCCTTCCACCTCCGCCATCACTCCGTCGCGGGAAGACGTGGTCCTCGCACGCTCCTCCCACCTCACGCGCCAAGAGCTCCTCCGCCGCCGCTCCCACAACCTCAAGGAGCTGACGAAATGCTACAAAGACCACTACTGGGGGTTCATGGAGCACCTCAAGATCCAGTACAGGGAGTACTACTGGAAGTACGGTGTCAGCCCTTTCAAAGAAGACAACAACGCCACCGCCACCACCAATAACAACAACAATGGAGTCGCTGCTGTTGAAGGCAGTGATGACAACCACAATAACAATCGCCGCTGCGCTTCCGTCGGCTGTAAGTTGAAGGCCATGGCCTTAACCAGCTTCTGCCACCTCCACATTCTTTCGGATTCGAAGCAGAGGCTCTACAAGGCTTGCAATTATGTTATCAAGAGTGCTCAGGCAGGACCTATAACATGTGGGAAGCCAATACTGAGATCCACTACCCCTTCTCTTTGTACTGTCCACTTCCAAAAGGCTCAGAAACATGTAACCAGGGCCTTGCGGAAGGCAGGGCTTAATGTTTCCTCATCAAGTAAGCTTGCTCCCAAGTTCCATGTGATAGTGGCAGAATATGTACGCCAAATCCAATCCACACGAAGAGCCGCACGAAAGGAAAATAAAAGTAAAGTTGCAATAAAGGAAGAAACTGCTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C3Hc3H

Protein Analysis

263

Amino Acids

29.33

Weight (kDa)

9.9

Isoelectric Point (pI)

51.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C3HC3H_KANSL2 PF13891 137 - 200 6.2e-17 KANL2-like, probable zinc-finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 198
AccII CGCG 2 cut(s) 136, 175
AciI CCGC 9 cut(s) 120, 136, 190, 193, 196, 333, 406, 634, 735
AclWI GGATC 2 cut(s) 262, 561
AfaI GTAC 5 cut(s) 275, 284, 296, 589, 708
AfiI CCNNNNNNNGG 2 cut(s) 244, 277
AflIII ACRYGT 2 cut(s) 545, 616
AgsI TTSAA 3 cut(s) 313, 374, 433
AjiI CACGTC 1 cut(s) 145
AjnI CCWGG 1 cut(s) 623
AluBI AGCT 4 cut(s) 184, 217, 453, 670
AluI AGCT 4 cut(s) 184, 217, 453, 670
Alw21I GWGCWC 3 cut(s) 186, 261, 529
AlwI GGATC 2 cut(s) 262, 561
AlwNI CAGNNNCTG 1 cut(s) 456
AoxI GGCC 3 cut(s) 435, 441, 627
ApeKI GCWGC 3 cut(s) 5, 365, 408
AspLEI GCGC 2 cut(s) 177, 413
AspS9I GGNCC 3 cut(s) 148, 536, 627
AsuII TTCGAA 1 cut(s) 482
AvaII GGWCC 2 cut(s) 148, 536
BanII GRGCYC 1 cut(s) 186
BbsI GAAGAC 2 cut(s) 147, 324
Bbv12I GWGCWC 3 cut(s) 186, 261, 529
BbvI GCAGC 2 cut(s) 352, 395
BccI CCATC 1 cut(s) 131
BciT130I CCWGG 1 cut(s) 625
BisI GCNGC 7 cut(s) 6, 193, 196, 366, 406, 409, 735
BlsI GCNGC 7 cut(s) 7, 194, 197, 367, 407, 410, 736
BmcAI AGTACT 1 cut(s) 284
Bme1390I CCNGG 1 cut(s) 625
Bme18I GGWCC 2 cut(s) 148, 536
BmgBI CACGTC 1 cut(s) 145
BmgT120I GGNCC 3 cut(s) 148, 536, 627
BmiI GGNNCC 1 cut(s) 16
BmrFI CCNGG 1 cut(s) 625
BmrI ACTGGG 1 cut(s) 253
BmuI ACTGGG 1 cut(s) 253
BpiI GAAGAC 2 cut(s) 147, 324
Bpu10I CCTNAGC 1 cut(s) 528
Bpu14I TTCGAA 1 cut(s) 482
BpuEI CTTGAG 2 cut(s) 194, 248
BsaJI CCNNGG 2 cut(s) 438, 624
Bsc4I CCNNNNNNNGG 2 cut(s) 244, 277
Bse1I ACTGG 3 cut(s) 248, 271, 293
BseBI CCWGG 1 cut(s) 625
BseDI CCNNGG 2 cut(s) 438, 624
BseLI CCNNNNNNNGG 2 cut(s) 244, 277
BseMII CTCAG 3 cut(s) 542, 554, 623
BseNI ACTGG 3 cut(s) 248, 271, 293
BseRI GAGGAG 3 cut(s) 30, 151, 176
BseXI GCAGC 2 cut(s) 352, 395
Bsh1236I CGCG 2 cut(s) 136, 175
BshFI GGCC 3 cut(s) 437, 443, 629
BsiHKAI GWGCWC 3 cut(s) 186, 261, 529
BslI CCNNNNNNNGG 2 cut(s) 244, 277
BsnI GGCC 3 cut(s) 437, 443, 629
Bsp119I TTCGAA 1 cut(s) 482
Bsp1286I GDGCHC 3 cut(s) 186, 261, 529
Bsp143I GATC 2 cut(s) 267, 566
Bsp19I CCATGG 1 cut(s) 438
BspACI CCGC 9 cut(s) 120, 136, 190, 193, 196, 333, 406, 634, 735
BspANI GGCC 3 cut(s) 437, 443, 629
BspCNI CTCAG 3 cut(s) 541, 555, 622
BspFNI CGCG 2 cut(s) 136, 175
BspLI GGNNCC 1 cut(s) 16
BspPI GGATC 2 cut(s) 262, 561
BspQI GCTCTTC 1 cut(s) 724
BspT104I TTCGAA 1 cut(s) 482
BsrBI CCGCTC 1 cut(s) 198
BsrI ACTGG 3 cut(s) 248, 271, 293
BssECI CCNNGG 2 cut(s) 438, 624
BssMI GATC 2 cut(s) 267, 566
BssT1I CCWWGG 1 cut(s) 438
Bst2UI CCWGG 1 cut(s) 625
Bst4CI ACNGT 2 cut(s) 299, 592
Bst6I CTCTTC 2 cut(s) 52, 724
BstBI TTCGAA 1 cut(s) 482
BstC8I GCNNGC 3 cut(s) 157, 505, 672
BstDEI CTNAG 3 cut(s) 528, 563, 609
BstDSI CCRYGG 1 cut(s) 438
BstFNI CGCG 2 cut(s) 136, 175
BstHHI GCGC 2 cut(s) 177, 413
BstKTI GATC 2 cut(s) 270, 569
BstMBI GATC 2 cut(s) 267, 566
BstMWI GCNNNNNNNGC 1 cut(s) 181
BstNI CCWGG 1 cut(s) 625
BstNSI RCATGY 2 cut(s) 549, 620
BstSCI CCNGG 1 cut(s) 623
BstUI CGCG 2 cut(s) 136, 175
BstV1I GCAGC 2 cut(s) 352, 395
BstV2I GAAGAC 2 cut(s) 147, 324
BstX2I RGATCY 2 cut(s) 267, 566
BstYI RGATCY 2 cut(s) 267, 566
BsuRI GGCC 3 cut(s) 437, 443, 629
BtgI CCRYGG 1 cut(s) 438
BtgZI GCGATG 1 cut(s) 64
BtrI CACGTC 1 cut(s) 145
BtsI GCAGTG 1 cut(s) 385
BtsIMutI CAGTG 1 cut(s) 385
Cac8I GCNNGC 3 cut(s) 157, 505, 672
CaiI CAGNNNCTG 1 cut(s) 456
CfoI GCGC 2 cut(s) 177, 413
Cfr13I GGNCC 3 cut(s) 148, 536, 627
Csp6I GTAC 5 cut(s) 274, 283, 295, 588, 707
CviAII CATG 5 cut(s) 253, 439, 546, 617, 686
CviQI GTAC 5 cut(s) 274, 283, 295, 588, 707
DdeI CTNAG 3 cut(s) 528, 563, 609
DpnI GATC 2 cut(s) 269, 568
DpnII GATC 2 cut(s) 267, 566
Eam1104I CTCTTC 2 cut(s) 52, 724
EarI CTCTTC 2 cut(s) 52, 724
EciI GGCGGA 2 cut(s) 109, 179
Ecl136II GAGCTC 1 cut(s) 184
Eco130I CCWWGG 1 cut(s) 438
Eco24I GRGCYC 1 cut(s) 186
Eco47I GGWCC 2 cut(s) 148, 536
Eco53kI GAGCTC 1 cut(s) 184
EcoICRI GAGCTC 1 cut(s) 184
EcoO109I RGGNCCY 2 cut(s) 536, 627
EcoRII CCWGG 1 cut(s) 623
EcoT14I CCWWGG 1 cut(s) 438
EcoT38I GRGCYC 1 cut(s) 186
ErhI CCWWGG 1 cut(s) 438
FaeI CATG 5 cut(s) 256, 442, 549, 620, 689
FaiI YATR 8 cut(s) 254, 440, 513, 542, 547, 618, 687, 705
FatI CATG 5 cut(s) 252, 438, 545, 616, 685
FauI CCCGC 1 cut(s) 129
Fnu4HI GCNGC 7 cut(s) 6, 193, 196, 366, 406, 409, 735
FriOI GRGCYC 1 cut(s) 186
Fsp4HI GCNGC 7 cut(s) 6, 193, 196, 366, 406, 409, 735
GlaI GCGC 2 cut(s) 176, 412
GluI GCNGC 7 cut(s) 6, 193, 196, 366, 406, 409, 735
HaeIII GGCC 3 cut(s) 437, 443, 629
HhaI GCGC 2 cut(s) 177, 413
Hin1II CATG 5 cut(s) 256, 442, 549, 620, 689
Hin6I GCGC 2 cut(s) 175, 411
HinP1I GCGC 2 cut(s) 175, 411
HindIII AAGCTT 1 cut(s) 668
HinfI GANTC 2 cut(s) 360, 479
Hpy166II GTNNAC 1 cut(s) 595
Hpy188I TCNGA 2 cut(s) 478, 612
Hpy188III TCNNGA 2 cut(s) 265, 520
Hpy8I GTNNAC 1 cut(s) 595
Hpy99I CGWCG 2 cut(s) 136, 422
HpyAV CCTTC 5 cut(s) 120, 368, 427, 588, 631
HpyCH4III ACNGT 2 cut(s) 299, 592
HpyCH4IV ACGT 1 cut(s) 144
HpyCH4V TGCA 2 cut(s) 507, 764
HpyF10VI GCNNNNNNNGC 1 cut(s) 181
HpyF3I CTNAG 3 cut(s) 528, 563, 609
HpySE526I ACGT 1 cut(s) 144
Hsp92II CATG 5 cut(s) 256, 442, 549, 620, 689
HspAI GCGC 2 cut(s) 175, 411
Kzo9I GATC 2 cut(s) 267, 566
LguI GCTCTTC 1 cut(s) 724
LmnI GCTCC 6 cut(s) 164, 189, 203, 214, 256, 679
Lsp1109I GCAGC 2 cut(s) 352, 395
MaeII ACGT 1 cut(s) 144
MaeIII GTNAC 1 cut(s) 619
MalI GATC 2 cut(s) 269, 568
MbiI CCGCTC 1 cut(s) 198
MboI GATC 2 cut(s) 267, 566
MboII GAAGA 6 cut(s) 39, 42, 152, 329, 741, 785
MflI RGATCY 2 cut(s) 267, 566
MhlI GDGCHC 3 cut(s) 186, 261, 529
MluCI AATT 1 cut(s) 508
MlyI GAGTC 1 cut(s) 369
MseI TTAA 2 cut(s) 446, 648
MspA1I CMGCKG 1 cut(s) 408
MspR9I CCNGG 1 cut(s) 625
MvaI CCWGG 1 cut(s) 625
MvnI CGCG 2 cut(s) 136, 175
MwoI GCNNNNNNNGC 1 cut(s) 181
NcoI CCATGG 1 cut(s) 438
NdeII GATC 2 cut(s) 267, 566
NlaIII CATG 5 cut(s) 256, 442, 549, 620, 689
NlaIV GGNNCC 1 cut(s) 16
NspI RCATGY 2 cut(s) 549, 620
NspV TTCGAA 1 cut(s) 482
PciI ACATGT 2 cut(s) 545, 616
PciSI GCTCTTC 1 cut(s) 724
PfeI GAWTC 1 cut(s) 479
PflFI GACNNNGTC 1 cut(s) 146
PkrI GCNGC 7 cut(s) 7, 194, 197, 367, 407, 410, 736
PleI GAGTC 1 cut(s) 368
PpsI GAGTC 1 cut(s) 368
PpuMI RGGWCCY 1 cut(s) 536
PscI ACATGT 2 cut(s) 545, 616
Psp124BI GAGCTC 1 cut(s) 186
Psp5II RGGWCCY 1 cut(s) 536
Psp6I CCWGG 1 cut(s) 623
PspGI CCWGG 1 cut(s) 623
PspN4I GGNNCC 1 cut(s) 16
PspPI GGNCC 3 cut(s) 148, 536, 627
PspPPI RGGWCCY 1 cut(s) 536
PstNI CAGNNNCTG 1 cut(s) 456
PsuI RGATCY 2 cut(s) 267, 566
PsyI GACNNNGTC 1 cut(s) 146
RsaI GTAC 5 cut(s) 275, 284, 296, 589, 708
RsaNI GTAC 5 cut(s) 274, 283, 295, 588, 707
SacI GAGCTC 1 cut(s) 186
SapI GCTCTTC 1 cut(s) 724
SaqAI TTAA 2 cut(s) 446, 648
SatI GCNGC 7 cut(s) 6, 193, 196, 366, 406, 409, 735
Sau3AI GATC 2 cut(s) 267, 566
Sau96I GGNCC 3 cut(s) 148, 536, 627
ScaI AGTACT 1 cut(s) 284
SchI GAGTC 1 cut(s) 369
ScrFI CCNGG 1 cut(s) 625
SduI GDGCHC 3 cut(s) 186, 261, 529
SfuI TTCGAA 1 cut(s) 482
SinI GGWCC 2 cut(s) 148, 536
SmlI CTYRAG 2 cut(s) 209, 263
SmoI CTYRAG 2 cut(s) 209, 263
Sse9I AATT 1 cut(s) 508
SsiI CCGC 9 cut(s) 120, 136, 190, 193, 196, 333, 406, 634, 735
SstI GAGCTC 1 cut(s) 186
StyD4I CCNGG 1 cut(s) 623
StyI CCWWGG 1 cut(s) 438
TaaI ACNGT 2 cut(s) 299, 592
TaiI ACGT 1 cut(s) 147
TaqI TCGA 1 cut(s) 482
TasI AATT 1 cut(s) 508
TatI WGTACW 3 cut(s) 273, 282, 587
TauI GCSGC 4 cut(s) 195, 198, 408, 737
TfiI GAWTC 1 cut(s) 479
Tru1I TTAA 2 cut(s) 446, 648
Tru9I TTAA 2 cut(s) 446, 648
TscAI CASTG 1 cut(s) 385
TseI GCWGC 3 cut(s) 5, 365, 408
TspDTI ATGAA 1 cut(s) 241
TspGWI ACGGA 2 cut(s) 120, 406
TspRI CASTG 1 cut(s) 385
Tth111I GACNNNGTC 1 cut(s) 146
VpaK11BI GGWCC 2 cut(s) 148, 536
XceI RCATGY 2 cut(s) 549, 620
ZrmI AGTACT 1 cut(s) 284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.