FvH4_2g08280

INO80 complex subunit D-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0001489
Physical Location & Seq
Reverse (-)
7201527 .. 7205537
4011 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g08280.t2

Sequence Viewer

Length: 651 bp
ATGAACGGTGGCGCCTCCTACGCTACCAAACCCCCTCCGGTGGAGAACCCAATGAGCGCCACCGAAGTCCCTTCCGCCTCCCACGTGTCGCGGCAAGAGGTCCTCCGCCGCCGCTCGCAGAACCTGAAGCAATTGACGAAATGCTACAGAGACCACTACTGGGCCTTGATGGAGGATCTCAAGATCCAATACCGCGACTACTACTGGAACCACGGCGTCAGCCCCGTCGTCCAAGGTAACAACAACGATGACGGAAAACTCAACCGTTGCTGCGCTTCCGTTGGCTGTAAATTGACGGCGATGGTCTTGACGAGCTTCTGTCATCTCCATATTCTCTCGGATTCGAAGCAGAGGCTCTACAAGCCCTGCGATTACGTCATCAAGAGCGCTCAGGCAGGACCTATAACATGTGGGAAGCCAATATTGAGATCCACTACTCCTTCTCTTTGTGCTCTCCACTTTCAAAAGGCTCAGAAGCATGTTACCAGGGCATTGCGGAAGGCAGGTCTTAATGTGTCCTCATCAAGTAAGCTTGCTCCTAAGTTCCATGTCATATTGGCAGAATATGTACACCAAATTCAAGCCAAGCGAAAAGCTGCTCGAAAGGAGAACAGAAGAAAGGTTGCTGTTAAGGAAGAAACTGTTGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C3Hc3H

Protein Analysis

217

Amino Acids

24.32

Weight (kDa)

9.79

Isoelectric Point (pI)

48.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C3HC3H_KANSL2 PF13891 90 - 128 1.3e-10 KANL2-like, probable zinc-finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 494
AccB1I GGYRCC 1 cut(s) 11
AccBSI CCGCTC 1 cut(s) 114
AccII CGCG 2 cut(s) 91, 195
AciI CCGC 7 cut(s) 75, 91, 106, 109, 112, 193, 496
AclWI GGATC 3 cut(s) 178, 183, 423
AcsI RAATTY 1 cut(s) 576
AcuI CTGAAG 1 cut(s) 146
AcvI CACGTG 1 cut(s) 85
AcyI GRCGYC 2 cut(s) 12, 216
AfaI GTAC 1 cut(s) 570
AfeI AGCGCT 1 cut(s) 388
AfiI CCNNNNNNNGG 2 cut(s) 40, 160
AflIII ACRYGT 2 cut(s) 84, 407
AgsI TTSAA 2 cut(s) 464, 581
AjnI CCWGG 1 cut(s) 485
AluBI AGCT 3 cut(s) 315, 532, 596
AluI AGCT 3 cut(s) 315, 532, 596
Alw21I GWGCWC 1 cut(s) 454
Alw26I GTCTC 1 cut(s) 144
AlwI GGATC 3 cut(s) 178, 183, 423
AlwNI CAGNNNCTG 1 cut(s) 124
Aor51HI AGCGCT 1 cut(s) 388
AoxI GGCC 1 cut(s) 162
ApeKI GCWGC 2 cut(s) 270, 596
ApoI RAATTY 1 cut(s) 576
AspLEI GCGC 4 cut(s) 14, 59, 275, 389
AspS9I GGNCC 3 cut(s) 100, 162, 398
AsuII TTCGAA 1 cut(s) 344
AvaII GGWCC 2 cut(s) 100, 398
BanI GGYRCC 1 cut(s) 11
BbrPI CACGTG 1 cut(s) 85
Bbv12I GWGCWC 1 cut(s) 454
BbvI GCAGC 2 cut(s) 257, 583
BccI CCATC 2 cut(s) 163, 295
BceAI ACGGC 2 cut(s) 229, 312
BciT130I CCWGG 1 cut(s) 487
BcoDI GTCTC 1 cut(s) 144
BfmI CTRYAG 1 cut(s) 145
BfoI RGCGCY 3 cut(s) 15, 60, 390
BfuAI ACCTGC 1 cut(s) 494
BisI GCNGC 5 cut(s) 92, 109, 112, 271, 597
BlsI GCNGC 5 cut(s) 93, 110, 113, 272, 598
Bme1390I CCNGG 1 cut(s) 487
Bme18I GGWCC 2 cut(s) 100, 398
BmgT120I GGNCC 3 cut(s) 100, 162, 398
BmiI GGNNCC 2 cut(s) 13, 209
BmrFI CCNGG 1 cut(s) 487
BmrI ACTGGG 1 cut(s) 169
BmuI ACTGGG 1 cut(s) 169
Bpu10I CCTNAGC 1 cut(s) 390
Bpu14I TTCGAA 1 cut(s) 344
BpuEI CTTGAG 1 cut(s) 164
BsaAI YACGTR 1 cut(s) 85
BsaHI GRCGYC 2 cut(s) 12, 216
BsaI GGTCTC 1 cut(s) 144
BsaJI CCNNGG 3 cut(s) 211, 232, 486
BsaWI WCCGGW 1 cut(s) 37
Bsc4I CCNNNNNNNGG 2 cut(s) 40, 160
Bse1I ACTGG 2 cut(s) 164, 209
Bse3DI GCAATG 1 cut(s) 491
BseBI CCWGG 1 cut(s) 487
BseDI CCNNGG 3 cut(s) 211, 232, 486
BseLI CCNNNNNNNGG 2 cut(s) 40, 160
BseMI GCAATG 1 cut(s) 491
BseMII CTCAG 2 cut(s) 404, 485
BseNI ACTGG 2 cut(s) 164, 209
BseXI GCAGC 2 cut(s) 257, 583
Bsh1236I CGCG 2 cut(s) 91, 195
BshFI GGCC 1 cut(s) 164
BshNI GGYRCC 1 cut(s) 11
BsiHKAI GWGCWC 1 cut(s) 454
BsiSI CCGG 1 cut(s) 38
BslFI GGGAC 1 cut(s) 53
BslI CCNNNNNNNGG 2 cut(s) 40, 160
BsmAI GTCTC 1 cut(s) 144
BsmFI GGGAC 1 cut(s) 53
BsnI GGCC 1 cut(s) 164
Bso31I GGTCTC 1 cut(s) 144
Bsp119I TTCGAA 1 cut(s) 344
Bsp1286I GDGCHC 1 cut(s) 454
Bsp1407I TGTACA 1 cut(s) 568
Bsp143I GATC 3 cut(s) 175, 183, 428
BspACI CCGC 7 cut(s) 75, 91, 106, 109, 112, 193, 496
BspANI GGCC 1 cut(s) 164
BspCNI CTCAG 2 cut(s) 403, 484
BspFNI CGCG 2 cut(s) 91, 195
BspLI GGNNCC 2 cut(s) 13, 209
BspMI ACCTGC 1 cut(s) 494
BspPI GGATC 3 cut(s) 178, 183, 423
BspT104I TTCGAA 1 cut(s) 344
BspT107I GGYRCC 1 cut(s) 11
BspTNI GGTCTC 1 cut(s) 144
BsrBI CCGCTC 1 cut(s) 114
BsrDI GCAATG 1 cut(s) 491
BsrGI TGTACA 1 cut(s) 568
BsrI ACTGG 2 cut(s) 164, 209
BssECI CCNNGG 3 cut(s) 211, 232, 486
BssMI GATC 3 cut(s) 175, 183, 428
BssNI GRCGYC 2 cut(s) 12, 216
BssT1I CCWWGG 1 cut(s) 232
Bst2UI CCWGG 1 cut(s) 487
Bst4CI ACNGT 3 cut(s) 8, 266, 643
BstACI GRCGYC 2 cut(s) 12, 216
BstAUI TGTACA 1 cut(s) 568
BstBAI YACGTR 1 cut(s) 85
BstBI TTCGAA 1 cut(s) 344
BstC8I GCNNGC 2 cut(s) 116, 534
BstDEI CTNAG 3 cut(s) 390, 471, 540
BstDSI CCRYGG 1 cut(s) 211
BstFNI CGCG 2 cut(s) 91, 195
BstH2I RGCGCY 3 cut(s) 15, 60, 390
BstHHI GCGC 4 cut(s) 14, 59, 275, 389
BstKTI GATC 3 cut(s) 178, 186, 431
BstMAI GTCTC 1 cut(s) 144
BstMBI GATC 3 cut(s) 175, 183, 428
BstMWI GCNNNNNNNGC 2 cut(s) 20, 361
BstNI CCWGG 1 cut(s) 487
BstNSI RCATGY 2 cut(s) 411, 482
BstSCI CCNGG 1 cut(s) 485
BstSFI CTRYAG 1 cut(s) 145
BstUI CGCG 2 cut(s) 91, 195
BstV1I GCAGC 2 cut(s) 257, 583
BstX2I RGATCY 3 cut(s) 175, 183, 428
BstYI RGATCY 3 cut(s) 175, 183, 428
BsuRI GGCC 1 cut(s) 164
BtgI CCRYGG 1 cut(s) 211
BtgZI GCGATG 1 cut(s) 314
BveI ACCTGC 1 cut(s) 494
Cac8I GCNNGC 2 cut(s) 116, 534
CaiI CAGNNNCTG 1 cut(s) 124
CfoI GCGC 4 cut(s) 14, 59, 275, 389
Cfr13I GGNCC 3 cut(s) 100, 162, 398
CseI GACGC 1 cut(s) 205
Csp6I GTAC 1 cut(s) 569
CviAII CATG 3 cut(s) 408, 479, 548
CviQI GTAC 1 cut(s) 569
DdeI CTNAG 3 cut(s) 390, 471, 540
DinI GGCGCC 1 cut(s) 13
DpnI GATC 3 cut(s) 177, 185, 430
DpnII GATC 3 cut(s) 175, 183, 428
EciI GGCGGA 2 cut(s) 64, 95
Eco130I CCWWGG 1 cut(s) 232
Eco31I GGTCTC 1 cut(s) 144
Eco47I GGWCC 2 cut(s) 100, 398
Eco47III AGCGCT 1 cut(s) 388
Eco57I CTGAAG 1 cut(s) 146
Eco72I CACGTG 1 cut(s) 85
EcoO109I RGGNCCY 2 cut(s) 100, 398
EcoRII CCWGG 1 cut(s) 485
EcoT14I CCWWGG 1 cut(s) 232
EgeI GGCGCC 1 cut(s) 13
EheI GGCGCC 1 cut(s) 13
ErhI CCWWGG 1 cut(s) 232
FaeI CATG 3 cut(s) 411, 482, 551
FaiI YATR 7 cut(s) 330, 404, 409, 480, 549, 554, 567
FaqI GGGAC 1 cut(s) 53
FatI CATG 3 cut(s) 407, 478, 547
Fnu4HI GCNGC 5 cut(s) 92, 109, 112, 271, 597
Fsp4HI GCNGC 5 cut(s) 92, 109, 112, 271, 597
GlaI GCGC 4 cut(s) 13, 58, 274, 388
GluI GCNGC 5 cut(s) 92, 109, 112, 271, 597
HaeII RGCGCY 3 cut(s) 15, 60, 390
HaeIII GGCC 1 cut(s) 164
HapII CCGG 1 cut(s) 38
HgaI GACGC 1 cut(s) 205
HhaI GCGC 4 cut(s) 14, 59, 275, 389
Hin1I GRCGYC 2 cut(s) 12, 216
Hin1II CATG 3 cut(s) 411, 482, 551
Hin6I GCGC 4 cut(s) 12, 57, 273, 387
HinP1I GCGC 4 cut(s) 12, 57, 273, 387
HincII GTYRAC 1 cut(s) 646
HindII GTYRAC 1 cut(s) 646
HindIII AAGCTT 1 cut(s) 530
HinfI GANTC 1 cut(s) 341
HpaII CCGG 1 cut(s) 38
Hpy166II GTNNAC 2 cut(s) 571, 646
Hpy188I TCNGA 2 cut(s) 340, 474
Hpy188III TCNNGA 3 cut(s) 181, 307, 382
Hpy8I GTNNAC 2 cut(s) 571, 646
Hpy99I CGWCG 1 cut(s) 230
HpyAV CCTTC 3 cut(s) 81, 450, 493
HpyCH4III ACNGT 3 cut(s) 8, 266, 643
HpyCH4IV ACGT 2 cut(s) 84, 375
HpyF10VI GCNNNNNNNGC 2 cut(s) 20, 361
HpyF3I CTNAG 3 cut(s) 390, 471, 540
HpySE526I ACGT 2 cut(s) 84, 375
Hsp92I GRCGYC 2 cut(s) 12, 216
Hsp92II CATG 3 cut(s) 411, 482, 551
HspAI GCGC 4 cut(s) 12, 57, 273, 387
KasI GGCGCC 1 cut(s) 11
Kzo9I GATC 3 cut(s) 175, 183, 428
LmnI GCTCC 1 cut(s) 541
Lsp1109I GCAGC 2 cut(s) 257, 583
MaeII ACGT 2 cut(s) 84, 375
MaeIII GTNAC 2 cut(s) 236, 481
MalI GATC 3 cut(s) 177, 185, 430
MbiI CCGCTC 1 cut(s) 114
MboI GATC 3 cut(s) 175, 183, 428
MboII GAAGA 2 cut(s) 627, 647
MfeI CAATTG 1 cut(s) 131
MflI RGATCY 3 cut(s) 175, 183, 428
MhlI GDGCHC 1 cut(s) 454
MluCI AATT 3 cut(s) 131, 290, 576
Mly113I GGCGCC 1 cut(s) 12
MnlI CCTC 8 cut(s) 25, 45, 88, 91, 113, 166, 345, 529
MseI TTAA 2 cut(s) 510, 630
MspI CCGG 1 cut(s) 38
MspR9I CCNGG 1 cut(s) 487
MunI CAATTG 1 cut(s) 131
MvaI CCWGG 1 cut(s) 487
MvnI CGCG 2 cut(s) 91, 195
MwoI GCNNNNNNNGC 2 cut(s) 20, 361
NarI GGCGCC 1 cut(s) 12
NdeII GATC 3 cut(s) 175, 183, 428
NlaIII CATG 3 cut(s) 411, 482, 551
NlaIV GGNNCC 2 cut(s) 13, 209
NspI RCATGY 2 cut(s) 411, 482
NspV TTCGAA 1 cut(s) 344
PciI ACATGT 1 cut(s) 407
PfeI GAWTC 1 cut(s) 341
PkrI GCNGC 5 cut(s) 93, 110, 113, 272, 598
PluTI GGCGCC 1 cut(s) 15
PmaCI CACGTG 1 cut(s) 85
PmlI CACGTG 1 cut(s) 85
Ppu21I YACGTR 1 cut(s) 85
PpuMI RGGWCCY 2 cut(s) 100, 398
PscI ACATGT 1 cut(s) 407
Psp5II RGGWCCY 2 cut(s) 100, 398
Psp6I CCWGG 1 cut(s) 485
PspCI CACGTG 1 cut(s) 85
PspGI CCWGG 1 cut(s) 485
PspN4I GGNNCC 2 cut(s) 13, 209
PspPI GGNCC 3 cut(s) 100, 162, 398
PspPPI RGGWCCY 2 cut(s) 100, 398
PstNI CAGNNNCTG 1 cut(s) 124
PsuI RGATCY 3 cut(s) 175, 183, 428
RsaI GTAC 1 cut(s) 570
RsaNI GTAC 1 cut(s) 569
SaqAI TTAA 2 cut(s) 510, 630
SatI GCNGC 5 cut(s) 92, 109, 112, 271, 597
Sau3AI GATC 3 cut(s) 175, 183, 428
Sau96I GGNCC 3 cut(s) 100, 162, 398
ScrFI CCNGG 1 cut(s) 487
SduI GDGCHC 1 cut(s) 454
SfcI CTRYAG 1 cut(s) 145
SfoI GGCGCC 1 cut(s) 13
SfuI TTCGAA 1 cut(s) 344
SinI GGWCC 2 cut(s) 100, 398
SmlI CTYRAG 1 cut(s) 179
SmoI CTYRAG 1 cut(s) 179
Sse9I AATT 3 cut(s) 131, 290, 576
SsiI CCGC 7 cut(s) 75, 91, 106, 109, 112, 193, 496
SspDI GGCGCC 1 cut(s) 11
SspI AATATT 1 cut(s) 423
StyD4I CCNGG 1 cut(s) 485
StyI CCWWGG 1 cut(s) 232
TaaI ACNGT 3 cut(s) 8, 266, 643
TaiI ACGT 2 cut(s) 87, 378
TaqI TCGA 2 cut(s) 344, 601
TasI AATT 3 cut(s) 131, 290, 576
TatI WGTACW 1 cut(s) 568
TauI GCSGC 3 cut(s) 94, 111, 114
TfiI GAWTC 1 cut(s) 341
Tru1I TTAA 2 cut(s) 510, 630
Tru9I TTAA 2 cut(s) 510, 630
TseI GCWGC 2 cut(s) 270, 596
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 2 cut(s) 267, 268
VpaK11BI GGWCC 2 cut(s) 100, 398
XapI RAATTY 1 cut(s) 576
XceI RCATGY 2 cut(s) 411, 482
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.