Rh4AG147300

INO80 complex subunit D-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0001489
Physical Location & Seq
Forward (+)
37192002 .. 37195237
3236 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG147300.1

Sequence Viewer

Length: 780 bp
ATGGCTACCTCTGGTTCCAAGAACAACCACCCTCCTCCCTCTTCTTCCAAGCCTCCGAAGAACCAAATCGTCATCGCCGACCCACAAATCCCAAACCCCGGCCCCTCCACCTCCGCCATCACTCCTTCGCGTGAAGACGTGGCCCTCTCACGCGCCTCCCACCTCACGCGCCAAGAGCTCCTCCGCCGCCGCTCCCACAACCTCAAGGAGCTGACGAAATGCTACAAAGACCACTACTGGGGGTTCATGGAGCACCTCAAGATCCAGTACAGGGAGTACTACTGGAAGTACGGTGTCAGCCCTTTCAAAGAAGACAACAACGCCACCGCCACCAATAACAACAACAATGGGGGCGCTGCTGTTGAAGGCAGTGATGACAACCACAATAACAATCGCCGCTGCGCTTCCGTCGGCTGTAAGTTGAAGGCCATGGCCTTAACCAGCTTCTGCCACCTCCACATTCTTTCGGATTCGAAGCAGAGGCTCTACAAGGCTTGCAATTATGTTATCAAGAGTGCTCAGGCAGGACCTATAACATGTGGGAAGCCAATACTGAGATCCACTACCCCTTCTCTTTGTACTGTCCACTTCCAAAAGGCTCAGAAACATGTAACCAGGGCCTTGCGGAAGGCAGGGCTTAATGTTTCCTCATCAAGTAAGCTTGCTCCCAAGTTCCATGTGATAGTGGCAGAATATGTACGCCAAATCCAATCCACACGAAGAGCCGCACGAAAGGAAAATAAAAGTAAAGTTGCAATAAAGGAAGAAACTGCTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C3Hc3H

Protein Analysis

259

Amino Acids

28.88

Weight (kDa)

9.9

Isoelectric Point (pI)

49.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C3HC3H_KANSL2 PF13891 134 - 197 6.1e-17 KANL2-like, probable zinc-finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 192
AccII CGCG 3 cut(s) 130, 153, 169
AciI CCGC 8 cut(s) 114, 184, 187, 190, 327, 397, 625, 726
AclWI GGATC 2 cut(s) 256, 552
AfaI GTAC 5 cut(s) 269, 278, 290, 580, 699
AfiI CCNNNNNNNGG 3 cut(s) 98, 238, 271
AflIII ACRYGT 2 cut(s) 536, 607
AgsI TTSAA 3 cut(s) 307, 365, 424
AjiI CACGTC 1 cut(s) 139
AjnI CCWGG 1 cut(s) 614
AluBI AGCT 4 cut(s) 178, 211, 444, 661
AluI AGCT 4 cut(s) 178, 211, 444, 661
Alw21I GWGCWC 3 cut(s) 180, 255, 520
AlwI GGATC 2 cut(s) 256, 552
AlwNI CAGNNNCTG 1 cut(s) 447
AoxI GGCC 5 cut(s) 100, 141, 426, 432, 618
ApeKI GCWGC 2 cut(s) 356, 399
AspLEI GCGC 4 cut(s) 155, 171, 356, 404
AspS9I GGNCC 4 cut(s) 101, 142, 527, 618
AsuC2I CCSGG 1 cut(s) 99
AsuII TTCGAA 1 cut(s) 473
AvaII GGWCC 1 cut(s) 527
BanII GRGCYC 1 cut(s) 180
BbsI GAAGAC 2 cut(s) 141, 318
Bbv12I GWGCWC 3 cut(s) 180, 255, 520
BbvI GCAGC 2 cut(s) 343, 386
BccI CCATC 1 cut(s) 125
BciT130I CCWGG 1 cut(s) 616
BcnI CCSGG 1 cut(s) 99
BfoI RGCGCY 1 cut(s) 357
BisI GCNGC 6 cut(s) 187, 190, 357, 397, 400, 726
BlsI GCNGC 6 cut(s) 188, 191, 358, 398, 401, 727
BmcAI AGTACT 1 cut(s) 278
Bme1390I CCNGG 2 cut(s) 99, 616
Bme18I GGWCC 1 cut(s) 527
BmgBI CACGTC 1 cut(s) 139
BmgT120I GGNCC 4 cut(s) 101, 142, 527, 618
BmiI GGNNCC 2 cut(s) 16, 103
BmrFI CCNGG 2 cut(s) 99, 616
BmrI ACTGGG 1 cut(s) 247
BmuI ACTGGG 1 cut(s) 247
BpiI GAAGAC 2 cut(s) 141, 318
Bpu10I CCTNAGC 1 cut(s) 519
Bpu14I TTCGAA 1 cut(s) 473
BpuEI CTTGAG 2 cut(s) 188, 242
BpuMI CCSGG 1 cut(s) 99
BsaJI CCNNGG 3 cut(s) 97, 429, 615
Bsc4I CCNNNNNNNGG 3 cut(s) 98, 238, 271
Bse1I ACTGG 3 cut(s) 242, 265, 287
BseBI CCWGG 1 cut(s) 616
BseDI CCNNGG 3 cut(s) 97, 429, 615
BseLI CCNNNNNNNGG 3 cut(s) 98, 238, 271
BseMII CTCAG 3 cut(s) 533, 545, 614
BseNI ACTGG 3 cut(s) 242, 265, 287
BseRI GAGGAG 2 cut(s) 24, 170
BseXI GCAGC 2 cut(s) 343, 386
Bsh1236I CGCG 3 cut(s) 130, 153, 169
BshFI GGCC 5 cut(s) 102, 143, 428, 434, 620
BsiHKAI GWGCWC 3 cut(s) 180, 255, 520
BsiSI CCGG 1 cut(s) 99
BslI CCNNNNNNNGG 3 cut(s) 98, 238, 271
BsnI GGCC 5 cut(s) 102, 143, 428, 434, 620
Bsp119I TTCGAA 1 cut(s) 473
Bsp1286I GDGCHC 3 cut(s) 180, 255, 520
Bsp143I GATC 2 cut(s) 261, 557
Bsp19I CCATGG 1 cut(s) 429
BspACI CCGC 8 cut(s) 114, 184, 187, 190, 327, 397, 625, 726
BspANI GGCC 5 cut(s) 102, 143, 428, 434, 620
BspCNI CTCAG 3 cut(s) 532, 546, 613
BspFNI CGCG 3 cut(s) 130, 153, 169
BspLI GGNNCC 2 cut(s) 16, 103
BspPI GGATC 2 cut(s) 256, 552
BspQI GCTCTTC 1 cut(s) 715
BspT104I TTCGAA 1 cut(s) 473
BsrBI CCGCTC 1 cut(s) 192
BsrI ACTGG 3 cut(s) 242, 265, 287
BssECI CCNNGG 3 cut(s) 97, 429, 615
BssMI GATC 2 cut(s) 261, 557
BssT1I CCWWGG 1 cut(s) 429
Bst2UI CCWGG 1 cut(s) 616
Bst4CI ACNGT 2 cut(s) 293, 583
Bst6I CTCTTC 2 cut(s) 46, 715
BstBI TTCGAA 1 cut(s) 473
BstC8I GCNNGC 2 cut(s) 496, 663
BstDEI CTNAG 3 cut(s) 519, 554, 600
BstDSI CCRYGG 1 cut(s) 429
BstFNI CGCG 3 cut(s) 130, 153, 169
BstH2I RGCGCY 1 cut(s) 357
BstHHI GCGC 4 cut(s) 155, 171, 356, 404
BstKTI GATC 2 cut(s) 264, 560
BstMBI GATC 2 cut(s) 261, 557
BstMWI GCNNNNNNNGC 1 cut(s) 175
BstNI CCWGG 1 cut(s) 616
BstNSI RCATGY 2 cut(s) 540, 611
BstSCI CCNGG 2 cut(s) 97, 614
BstUI CGCG 3 cut(s) 130, 153, 169
BstV1I GCAGC 2 cut(s) 343, 386
BstV2I GAAGAC 2 cut(s) 141, 318
BstX2I RGATCY 2 cut(s) 261, 557
BstYI RGATCY 2 cut(s) 261, 557
BsuRI GGCC 5 cut(s) 102, 143, 428, 434, 620
BtgI CCRYGG 1 cut(s) 429
BtgZI GCGATG 1 cut(s) 58
BtrI CACGTC 1 cut(s) 139
BtsI GCAGTG 1 cut(s) 376
BtsIMutI CAGTG 1 cut(s) 376
Cac8I GCNNGC 2 cut(s) 496, 663
CaiI CAGNNNCTG 1 cut(s) 447
CfoI GCGC 4 cut(s) 155, 171, 356, 404
Cfr13I GGNCC 4 cut(s) 101, 142, 527, 618
Csp6I GTAC 5 cut(s) 268, 277, 289, 579, 698
CviAII CATG 5 cut(s) 247, 430, 537, 608, 677
CviQI GTAC 5 cut(s) 268, 277, 289, 579, 698
DdeI CTNAG 3 cut(s) 519, 554, 600
DpnI GATC 2 cut(s) 263, 559
DpnII GATC 2 cut(s) 261, 557
Eam1104I CTCTTC 2 cut(s) 46, 715
EarI CTCTTC 2 cut(s) 46, 715
EciI GGCGGA 2 cut(s) 103, 173
Ecl136II GAGCTC 1 cut(s) 178
Eco130I CCWWGG 1 cut(s) 429
Eco24I GRGCYC 1 cut(s) 180
Eco47I GGWCC 1 cut(s) 527
Eco53kI GAGCTC 1 cut(s) 178
EcoICRI GAGCTC 1 cut(s) 178
EcoO109I RGGNCCY 2 cut(s) 527, 618
EcoRII CCWGG 1 cut(s) 614
EcoT14I CCWWGG 1 cut(s) 429
EcoT38I GRGCYC 1 cut(s) 180
ErhI CCWWGG 1 cut(s) 429
FaeI CATG 5 cut(s) 250, 433, 540, 611, 680
FaiI YATR 8 cut(s) 248, 431, 504, 533, 538, 609, 678, 696
FatI CATG 5 cut(s) 246, 429, 536, 607, 676
Fnu4HI GCNGC 6 cut(s) 187, 190, 357, 397, 400, 726
FriOI GRGCYC 1 cut(s) 180
Fsp4HI GCNGC 6 cut(s) 187, 190, 357, 397, 400, 726
GlaI GCGC 4 cut(s) 154, 170, 355, 403
GluI GCNGC 6 cut(s) 187, 190, 357, 397, 400, 726
HaeII RGCGCY 1 cut(s) 357
HaeIII GGCC 5 cut(s) 102, 143, 428, 434, 620
HapII CCGG 1 cut(s) 99
HhaI GCGC 4 cut(s) 155, 171, 356, 404
Hin1II CATG 5 cut(s) 250, 433, 540, 611, 680
Hin6I GCGC 4 cut(s) 153, 169, 354, 402
HinP1I GCGC 4 cut(s) 153, 169, 354, 402
HindIII AAGCTT 1 cut(s) 659
HinfI GANTC 1 cut(s) 470
HpaII CCGG 1 cut(s) 99
Hpy166II GTNNAC 1 cut(s) 586
Hpy188I TCNGA 3 cut(s) 57, 469, 603
Hpy188III TCNNGA 2 cut(s) 259, 511
Hpy8I GTNNAC 1 cut(s) 586
Hpy99I CGWCG 1 cut(s) 413
HpyAV CCTTC 5 cut(s) 135, 359, 418, 579, 622
HpyCH4III ACNGT 2 cut(s) 293, 583
HpyCH4IV ACGT 1 cut(s) 138
HpyCH4V TGCA 2 cut(s) 498, 755
HpyF10VI GCNNNNNNNGC 1 cut(s) 175
HpyF3I CTNAG 3 cut(s) 519, 554, 600
HpySE526I ACGT 1 cut(s) 138
Hsp92II CATG 5 cut(s) 250, 433, 540, 611, 680
HspAI GCGC 4 cut(s) 153, 169, 354, 402
Kzo9I GATC 2 cut(s) 261, 557
LguI GCTCTTC 1 cut(s) 715
LmnI GCTCC 5 cut(s) 183, 197, 208, 250, 670
Lsp1109I GCAGC 2 cut(s) 343, 386
MaeII ACGT 1 cut(s) 138
MaeIII GTNAC 1 cut(s) 610
MalI GATC 2 cut(s) 263, 559
MbiI CCGCTC 1 cut(s) 192
MboI GATC 2 cut(s) 261, 557
MboII GAAGA 7 cut(s) 33, 36, 70, 146, 323, 732, 776
MflI RGATCY 2 cut(s) 261, 557
MhlI GDGCHC 3 cut(s) 180, 255, 520
MluCI AATT 1 cut(s) 499
MseI TTAA 2 cut(s) 437, 639
MspA1I CMGCKG 1 cut(s) 399
MspI CCGG 1 cut(s) 99
MspR9I CCNGG 2 cut(s) 99, 616
MvaI CCWGG 1 cut(s) 616
MvnI CGCG 3 cut(s) 130, 153, 169
MwoI GCNNNNNNNGC 1 cut(s) 175
NciI CCSGG 1 cut(s) 99
NcoI CCATGG 1 cut(s) 429
NdeII GATC 2 cut(s) 261, 557
NlaIII CATG 5 cut(s) 250, 433, 540, 611, 680
NlaIV GGNNCC 2 cut(s) 16, 103
NspI RCATGY 2 cut(s) 540, 611
NspV TTCGAA 1 cut(s) 473
PciI ACATGT 2 cut(s) 536, 607
PciSI GCTCTTC 1 cut(s) 715
PcsI WCGNNNNNNNCGW 1 cut(s) 75
PfeI GAWTC 1 cut(s) 470
PkrI GCNGC 6 cut(s) 188, 191, 358, 398, 401, 727
PpuMI RGGWCCY 1 cut(s) 527
PscI ACATGT 2 cut(s) 536, 607
Psp124BI GAGCTC 1 cut(s) 180
Psp5II RGGWCCY 1 cut(s) 527
Psp6I CCWGG 1 cut(s) 614
PspGI CCWGG 1 cut(s) 614
PspN4I GGNNCC 2 cut(s) 16, 103
PspPI GGNCC 4 cut(s) 101, 142, 527, 618
PspPPI RGGWCCY 1 cut(s) 527
PstNI CAGNNNCTG 1 cut(s) 447
PsuI RGATCY 2 cut(s) 261, 557
RsaI GTAC 5 cut(s) 269, 278, 290, 580, 699
RsaNI GTAC 5 cut(s) 268, 277, 289, 579, 698
SacI GAGCTC 1 cut(s) 180
SapI GCTCTTC 1 cut(s) 715
SaqAI TTAA 2 cut(s) 437, 639
SatI GCNGC 6 cut(s) 187, 190, 357, 397, 400, 726
Sau3AI GATC 2 cut(s) 261, 557
Sau96I GGNCC 4 cut(s) 101, 142, 527, 618
ScaI AGTACT 1 cut(s) 278
ScrFI CCNGG 2 cut(s) 99, 616
SduI GDGCHC 3 cut(s) 180, 255, 520
SfuI TTCGAA 1 cut(s) 473
SinI GGWCC 1 cut(s) 527
SmlI CTYRAG 2 cut(s) 203, 257
SmoI CTYRAG 2 cut(s) 203, 257
Sse9I AATT 1 cut(s) 499
SsiI CCGC 8 cut(s) 114, 184, 187, 190, 327, 397, 625, 726
SstI GAGCTC 1 cut(s) 180
StyD4I CCNGG 2 cut(s) 97, 614
StyI CCWWGG 1 cut(s) 429
TaaI ACNGT 2 cut(s) 293, 583
TaiI ACGT 1 cut(s) 141
TaqI TCGA 1 cut(s) 473
TasI AATT 1 cut(s) 499
TatI WGTACW 3 cut(s) 267, 276, 578
TauI GCSGC 4 cut(s) 189, 192, 399, 728
TfiI GAWTC 1 cut(s) 470
Tru1I TTAA 2 cut(s) 437, 639
Tru9I TTAA 2 cut(s) 437, 639
TscAI CASTG 1 cut(s) 376
TseI GCWGC 2 cut(s) 356, 399
TspDTI ATGAA 1 cut(s) 235
TspGWI ACGGA 1 cut(s) 397
TspRI CASTG 1 cut(s) 376
VpaK11BI GGWCC 1 cut(s) 527
XceI RCATGY 2 cut(s) 540, 611
ZrmI AGTACT 1 cut(s) 278
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.