RchiOBHm_Chr6g0273581

INO80 complex subunit D-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0001489
Physical Location & Seq
Reverse (-)
34476109 .. 34478075
1967 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ24543

Sequence Viewer

Length: 303 bp
ATGGTTTGGCATTCTTTTGGCGCACGGCATGCCAACGATGCTCAGGCAAGACCTATAACATGTGGGAAGCCAATACTGAGATCCACTACCCCTTCTCTTTGTACTGTCCACTTCCAAAAGGCTCAGAAGCATGTAACCAGGGCCTTGCGGAAGGCGGGGCTTAACGTTTCCTCATCAAGTAAACTTGCTCCCAAGTTCCATGTGATCGTGGCAGAATACATACGCCAAATCCAATCCACACGAAGAGCCGCACGAAAGGAAAATAAAAGTAAAGTTGCAATAAAGGAAGAAACAGCTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C3Hc3H

Protein Analysis

100

Amino Acids

11.16

Weight (kDa)

10.8

Isoelectric Point (pI)

48.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 148, 155, 249
AclI AACGTT 1 cut(s) 165
AclWI GGATC 1 cut(s) 75
AfaI GTAC 1 cut(s) 103
AflIII ACRYGT 1 cut(s) 59
AjnI CCWGG 1 cut(s) 137
AluBI AGCT 1 cut(s) 296
AluI AGCT 1 cut(s) 296
AlwI GGATC 1 cut(s) 75
AoxI GGCC 1 cut(s) 141
AspLEI GCGC 1 cut(s) 23
AspS9I GGNCC 1 cut(s) 141
BceAI ACGGC 1 cut(s) 41
BciT130I CCWGG 1 cut(s) 139
BisI GCNGC 1 cut(s) 249
BlsI GCNGC 1 cut(s) 250
Bme1390I CCNGG 1 cut(s) 139
BmgT120I GGNCC 1 cut(s) 141
BmrFI CCNGG 1 cut(s) 139
BmsI GCATC 1 cut(s) 28
Bpu10I CCTNAGC 1 cut(s) 42
BsaJI CCNNGG 1 cut(s) 138
BseBI CCWGG 1 cut(s) 139
BseDI CCNNGG 1 cut(s) 138
BseMII CTCAG 3 cut(s) 56, 68, 137
BshFI GGCC 1 cut(s) 143
BsmI GAATGC 1 cut(s) 10
BsnI GGCC 1 cut(s) 143
Bsp143I GATC 2 cut(s) 80, 204
BspACI CCGC 3 cut(s) 148, 155, 249
BspANI GGCC 1 cut(s) 143
BspCNI CTCAG 3 cut(s) 55, 69, 136
BspPI GGATC 1 cut(s) 75
BspQI GCTCTTC 1 cut(s) 238
BssECI CCNNGG 1 cut(s) 138
BssMI GATC 2 cut(s) 80, 204
Bst2UI CCWGG 1 cut(s) 139
Bst4CI ACNGT 1 cut(s) 106
Bst6I CTCTTC 1 cut(s) 238
BstAPI GCANNNNNTGC 1 cut(s) 29
BstC8I GCNNGC 1 cut(s) 30
BstDEI CTNAG 3 cut(s) 42, 77, 123
BstHHI GCGC 1 cut(s) 23
BstKTI GATC 2 cut(s) 83, 207
BstMBI GATC 2 cut(s) 80, 204
BstMWI GCNNNNNNNGC 2 cut(s) 29, 38
BstNI CCWGG 1 cut(s) 139
BstNSI RCATGY 3 cut(s) 32, 63, 134
BstSCI CCNGG 1 cut(s) 137
BstX2I RGATCY 1 cut(s) 80
BstYI RGATCY 1 cut(s) 80
BsuRI GGCC 1 cut(s) 143
Cac8I GCNNGC 1 cut(s) 30
CfoI GCGC 1 cut(s) 23
Cfr13I GGNCC 1 cut(s) 141
Csp6I GTAC 1 cut(s) 102
CviAII CATG 4 cut(s) 29, 60, 131, 200
CviJI RGCY 6 cut(s) 70, 122, 143, 160, 248, 296
CviKI_1 RGCY 6 cut(s) 70, 122, 143, 160, 248, 296
CviQI GTAC 1 cut(s) 102
DdeI CTNAG 3 cut(s) 42, 77, 123
DpnI GATC 2 cut(s) 82, 206
DpnII GATC 2 cut(s) 80, 204
Eam1104I CTCTTC 1 cut(s) 238
EarI CTCTTC 1 cut(s) 238
EcoO109I RGGNCCY 1 cut(s) 141
EcoRII CCWGG 1 cut(s) 137
FaeI CATG 4 cut(s) 32, 63, 134, 203
FaiI YATR 6 cut(s) 30, 56, 61, 132, 201, 221
FatI CATG 4 cut(s) 28, 59, 130, 199
FauI CCCGC 1 cut(s) 148
Fnu4HI GCNGC 1 cut(s) 249
Fsp4HI GCNGC 1 cut(s) 249
GlaI GCGC 1 cut(s) 22
GluI GCNGC 1 cut(s) 249
HaeIII GGCC 1 cut(s) 143
HhaI GCGC 1 cut(s) 23
Hin1II CATG 4 cut(s) 32, 63, 134, 203
Hin6I GCGC 1 cut(s) 21
HinP1I GCGC 1 cut(s) 21
Hpy166II GTNNAC 2 cut(s) 109, 182
Hpy188I TCNGA 1 cut(s) 126
Hpy8I GTNNAC 2 cut(s) 109, 182
HpyAV CCTTC 2 cut(s) 102, 145
HpyCH4III ACNGT 1 cut(s) 106
HpyCH4IV ACGT 1 cut(s) 165
HpyCH4V TGCA 1 cut(s) 278
HpyF10VI GCNNNNNNNGC 2 cut(s) 29, 38
HpyF3I CTNAG 3 cut(s) 42, 77, 123
HpySE526I ACGT 1 cut(s) 165
Hsp92II CATG 4 cut(s) 32, 63, 134, 203
HspAI GCGC 1 cut(s) 21
Kzo9I GATC 2 cut(s) 80, 204
LguI GCTCTTC 1 cut(s) 238
LmnI GCTCC 1 cut(s) 193
LpnPI CCDG 3 cut(s) 29, 124, 151
LweI GCATC 1 cut(s) 28
MaeII ACGT 1 cut(s) 165
MaeIII GTNAC 1 cut(s) 133
MalI GATC 2 cut(s) 82, 206
MboI GATC 2 cut(s) 80, 204
MboII GAAGA 2 cut(s) 255, 299
MflI RGATCY 1 cut(s) 80
MnlI CCTC 1 cut(s) 181
MseI TTAA 1 cut(s) 162
MspA1I CMGCKG 1 cut(s) 296
MspR9I CCNGG 1 cut(s) 139
Mva1269I GAATGC 1 cut(s) 10
MvaI CCWGG 1 cut(s) 139
MwoI GCNNNNNNNGC 2 cut(s) 29, 38
NdeII GATC 2 cut(s) 80, 204
NlaIII CATG 4 cut(s) 32, 63, 134, 203
NspI RCATGY 3 cut(s) 32, 63, 134
PaeI GCATGC 1 cut(s) 32
PciI ACATGT 1 cut(s) 59
PciSI GCTCTTC 1 cut(s) 238
PctI GAATGC 1 cut(s) 10
PkrI GCNGC 1 cut(s) 250
PscI ACATGT 1 cut(s) 59
Psp1406I AACGTT 1 cut(s) 165
Psp6I CCWGG 1 cut(s) 137
PspGI CCWGG 1 cut(s) 137
PspPI GGNCC 1 cut(s) 141
PsuI RGATCY 1 cut(s) 80
PvuII CAGCTG 1 cut(s) 296
RsaI GTAC 1 cut(s) 103
RsaNI GTAC 1 cut(s) 102
SapI GCTCTTC 1 cut(s) 238
SaqAI TTAA 1 cut(s) 162
SatI GCNGC 1 cut(s) 249
Sau3AI GATC 2 cut(s) 80, 204
Sau96I GGNCC 1 cut(s) 141
ScrFI CCNGG 1 cut(s) 139
SetI ASST 3 cut(s) 55, 168, 298
SfaNI GCATC 1 cut(s) 28
SphI GCATGC 1 cut(s) 32
SsiI CCGC 3 cut(s) 148, 155, 249
StyD4I CCNGG 1 cut(s) 137
TaaI ACNGT 1 cut(s) 106
TaiI ACGT 1 cut(s) 168
TatI WGTACW 1 cut(s) 101
TauI GCSGC 1 cut(s) 251
Tru1I TTAA 1 cut(s) 162
Tru9I TTAA 1 cut(s) 162
XceI RCATGY 3 cut(s) 32, 63, 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.