Rmu_co8062746.1_g000001

INO80 complex subunit D-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8062746.1
OG0001489
Physical Location & Seq
Forward (+)
1 .. 381
381 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8062746.1_g000001.1.cds

Sequence Viewer

Length: 381 bp
aacctcaaggagctgacgaaatgctacaaagaccactactgggggttcatggagcatctcaagatccagtaccgggagtactactggaagtacggtgtcagccctttcaaagaagacaacaacgccaccgccaccgccaccaataacaacaaccatgggggcgctgctgttgaaggcagtgatgacaaccacaataacaatcgccgctgcgcttccgtcggctgtaagttgaaggccatggccttaaccagcttctgccacctccacattctttcggattcgaagcagaggctctacaaggcttgcaattatgttatcaagaggtgttcgtcttctcttttctttctattgttcaatttcagtttcatgtgtattttgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C3Hc3H

Protein Analysis

126

Amino Acids

14.63

Weight (kDa)

8.97

Isoelectric Point (pI)

35.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 129, 135, 205
AclWI GGATC 1 cut(s) 58
AfaI GTAC 3 cut(s) 71, 80, 92
AfiI CCNNNNNNNGG 2 cut(s) 40, 73
AgsI TTSAA 4 cut(s) 109, 173, 232, 355
AluBI AGCT 2 cut(s) 13, 252
AluI AGCT 2 cut(s) 13, 252
AlwI GGATC 1 cut(s) 58
AlwNI CAGNNNCTG 1 cut(s) 255
AoxI GGCC 2 cut(s) 234, 240
ApeKI GCWGC 2 cut(s) 164, 207
AspLEI GCGC 2 cut(s) 164, 212
AsuC2I CCSGG 1 cut(s) 74
AsuII TTCGAA 1 cut(s) 281
BbsI GAAGAC 2 cut(s) 120, 324
BbvI GCAGC 2 cut(s) 151, 194
BcnI CCSGG 1 cut(s) 74
BfoI RGCGCY 1 cut(s) 165
BisI GCNGC 3 cut(s) 165, 205, 208
BlsI GCNGC 3 cut(s) 166, 206, 209
BmcAI AGTACT 1 cut(s) 80
Bme1390I CCNGG 1 cut(s) 74
BmrFI CCNGG 1 cut(s) 74
BmrI ACTGGG 1 cut(s) 49
BmsI GCATC 1 cut(s) 64
BmuI ACTGGG 1 cut(s) 49
BpiI GAAGAC 2 cut(s) 120, 324
Bpu14I TTCGAA 1 cut(s) 281
BpuEI CTTGAG 1 cut(s) 44
BpuMI CCSGG 1 cut(s) 74
BsaJI CCNNGG 2 cut(s) 154, 237
Bsc4I CCNNNNNNNGG 2 cut(s) 40, 73
Bse1I ACTGG 3 cut(s) 44, 67, 89
BseDI CCNNGG 2 cut(s) 154, 237
BseLI CCNNNNNNNGG 2 cut(s) 40, 73
BseNI ACTGG 3 cut(s) 44, 67, 89
BseXI GCAGC 2 cut(s) 151, 194
BshFI GGCC 2 cut(s) 236, 242
BsiSI CCGG 1 cut(s) 73
BslI CCNNNNNNNGG 2 cut(s) 40, 73
BsnI GGCC 2 cut(s) 236, 242
Bsp119I TTCGAA 1 cut(s) 281
Bsp143I GATC 1 cut(s) 63
Bsp19I CCATGG 2 cut(s) 154, 237
BspACI CCGC 3 cut(s) 129, 135, 205
BspANI GGCC 2 cut(s) 236, 242
BspPI GGATC 1 cut(s) 58
BspT104I TTCGAA 1 cut(s) 281
BsrI ACTGG 3 cut(s) 44, 67, 89
BssECI CCNNGG 2 cut(s) 154, 237
BssMI GATC 1 cut(s) 63
BssT1I CCWWGG 2 cut(s) 154, 237
Bst4CI ACNGT 1 cut(s) 95
BstBI TTCGAA 1 cut(s) 281
BstC8I GCNNGC 1 cut(s) 304
BstDSI CCRYGG 2 cut(s) 154, 237
BstH2I RGCGCY 1 cut(s) 165
BstHHI GCGC 2 cut(s) 164, 212
BstKTI GATC 1 cut(s) 66
BstMBI GATC 1 cut(s) 63
BstSCI CCNGG 1 cut(s) 72
BstV1I GCAGC 2 cut(s) 151, 194
BstV2I GAAGAC 2 cut(s) 120, 324
BstX2I RGATCY 1 cut(s) 63
BstYI RGATCY 1 cut(s) 63
BsuRI GGCC 2 cut(s) 236, 242
BtgI CCRYGG 2 cut(s) 154, 237
BtsI GCAGTG 1 cut(s) 184
BtsIMutI CAGTG 1 cut(s) 184
Cac8I GCNNGC 1 cut(s) 304
CaiI CAGNNNCTG 1 cut(s) 255
CfoI GCGC 2 cut(s) 164, 212
Csp6I GTAC 3 cut(s) 70, 79, 91
CviAII CATG 4 cut(s) 49, 155, 238, 367
CviJI RGCY 8 cut(s) 13, 102, 222, 236, 242, 252, 292, 302
CviKI_1 RGCY 8 cut(s) 13, 102, 222, 236, 242, 252, 292, 302
CviQI GTAC 3 cut(s) 70, 79, 91
DpnI GATC 1 cut(s) 65
DpnII GATC 1 cut(s) 63
Eco130I CCWWGG 2 cut(s) 154, 237
EcoT14I CCWWGG 2 cut(s) 154, 237
ErhI CCWWGG 2 cut(s) 154, 237
FaeI CATG 4 cut(s) 52, 158, 241, 370
FaiI YATR 5 cut(s) 50, 156, 239, 312, 368
FatI CATG 4 cut(s) 48, 154, 237, 366
Fnu4HI GCNGC 3 cut(s) 165, 205, 208
Fsp4HI GCNGC 3 cut(s) 165, 205, 208
GlaI GCGC 2 cut(s) 163, 211
GluI GCNGC 3 cut(s) 165, 205, 208
HaeII RGCGCY 1 cut(s) 165
HaeIII GGCC 2 cut(s) 236, 242
HapII CCGG 1 cut(s) 73
HhaI GCGC 2 cut(s) 164, 212
Hin1II CATG 4 cut(s) 52, 158, 241, 370
Hin6I GCGC 2 cut(s) 162, 210
HinP1I GCGC 2 cut(s) 162, 210
HinfI GANTC 1 cut(s) 278
HpaII CCGG 1 cut(s) 73
Hpy188I TCNGA 1 cut(s) 277
Hpy188III TCNNGA 2 cut(s) 61, 319
Hpy99I CGWCG 1 cut(s) 221
HpyAV CCTTC 2 cut(s) 167, 226
HpyCH4III ACNGT 1 cut(s) 95
HpyCH4V TGCA 1 cut(s) 306
Hsp92II CATG 4 cut(s) 52, 158, 241, 370
HspAI GCGC 2 cut(s) 162, 210
Kzo9I GATC 1 cut(s) 63
LmnI GCTCC 2 cut(s) 10, 52
LpnPI CCDG 5 cut(s) 25, 70, 80, 86, 262
Lsp1109I GCAGC 2 cut(s) 151, 194
LweI GCATC 1 cut(s) 64
MalI GATC 1 cut(s) 65
MboI GATC 1 cut(s) 63
MboII GAAGA 2 cut(s) 125, 324
MflI RGATCY 1 cut(s) 63
MluCI AATT 2 cut(s) 307, 355
MnlI CCTC 4 cut(s) 14, 272, 282, 315
MseI TTAA 1 cut(s) 245
MspA1I CMGCKG 1 cut(s) 207
MspI CCGG 1 cut(s) 73
MspR9I CCNGG 1 cut(s) 74
NciI CCSGG 1 cut(s) 74
NcoI CCATGG 2 cut(s) 154, 237
NdeII GATC 1 cut(s) 63
NlaIII CATG 4 cut(s) 52, 158, 241, 370
NspV TTCGAA 1 cut(s) 281
PfeI GAWTC 1 cut(s) 278
PkrI GCNGC 3 cut(s) 166, 206, 209
PstNI CAGNNNCTG 1 cut(s) 255
PsuI RGATCY 1 cut(s) 63
RsaI GTAC 3 cut(s) 71, 80, 92
RsaNI GTAC 3 cut(s) 70, 79, 91
SaqAI TTAA 1 cut(s) 245
SatI GCNGC 3 cut(s) 165, 205, 208
Sau3AI GATC 1 cut(s) 63
ScaI AGTACT 1 cut(s) 80
ScrFI CCNGG 1 cut(s) 74
SetI ASST 5 cut(s) 6, 15, 254, 264, 326
SfaNI GCATC 1 cut(s) 64
SfuI TTCGAA 1 cut(s) 281
SmlI CTYRAG 2 cut(s) 5, 59
SmoI CTYRAG 2 cut(s) 5, 59
Sse9I AATT 2 cut(s) 307, 355
SsiI CCGC 3 cut(s) 129, 135, 205
StyD4I CCNGG 1 cut(s) 72
StyI CCWWGG 2 cut(s) 154, 237
TaaI ACNGT 1 cut(s) 95
TaqI TCGA 1 cut(s) 281
TasI AATT 2 cut(s) 307, 355
TatI WGTACW 1 cut(s) 78
TauI GCSGC 1 cut(s) 207
TfiI GAWTC 1 cut(s) 278
Tru1I TTAA 1 cut(s) 245
Tru9I TTAA 1 cut(s) 245
TscAI CASTG 1 cut(s) 184
TseI GCWGC 2 cut(s) 164, 207
TspDTI ATGAA 2 cut(s) 37, 355
TspGWI ACGGA 1 cut(s) 205
TspRI CASTG 1 cut(s) 184
ZrmI AGTACT 1 cut(s) 80
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.