AT1G06010

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0001919
Physical Location & Seq
Forward (+)
1822583 .. 1824236
1654 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G06010.1

Sequence Viewer

Length: 237 bp
ATGGGAAGAGAGAAGAGCCCTGGTTTGAAGATCCTCTGGGTATGGACTATCGGCACTGCTGCTATATTGGTGACAAGTGTTGTCCGCACAAGAATGCAGGATATGCAAACAATGATGAACCAGAACCAGGAACAAGCACCAAAAGAAAACCAGAACGGAAGTGCAGGTGATTCTTCCGTCTTAATGGATGAAACAGTTTTGCCTGAGTCGGATCGAGAGATTGCAGAAAAGCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

78

Amino Acids

8.69

Weight (kDa)

4.76

Isoelectric Point (pI)

31.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 155
Acc36I ACCTGC 1 cut(s) 155
AciI CCGC 1 cut(s) 85
AclWI GGATC 2 cut(s) 25, 219
AfiI CCNNNNNNNGG 1 cut(s) 127
AgsI TTSAA 1 cut(s) 28
AjnI CCWGG 2 cut(s) 19, 126
AluBI AGCT 1 cut(s) 232
AluI AGCT 1 cut(s) 232
AlwI GGATC 2 cut(s) 25, 219
ApeKI GCWGC 1 cut(s) 59
AsuHPI GGTGA 2 cut(s) 82, 179
BanII GRGCYC 1 cut(s) 20
BbvI GCAGC 1 cut(s) 46
BciT130I CCWGG 2 cut(s) 21, 128
BfuAI ACCTGC 1 cut(s) 155
BisI GCNGC 1 cut(s) 60
BlsI GCNGC 1 cut(s) 61
Bme1390I CCNGG 2 cut(s) 21, 128
BmrFI CCNGG 2 cut(s) 21, 128
BsaJI CCNNGG 1 cut(s) 19
Bsc4I CCNNNNNNNGG 1 cut(s) 127
BseBI CCWGG 2 cut(s) 21, 128
BseDI CCNNGG 1 cut(s) 19
BseGI GGATG 1 cut(s) 193
BseLI CCNNNNNNNGG 1 cut(s) 127
BseMII CTCAG 1 cut(s) 195
BseXI GCAGC 1 cut(s) 46
BsgI GTGCAG 1 cut(s) 183
BslI CCNNNNNNNGG 1 cut(s) 127
BsmI GAATGC 1 cut(s) 99
Bsp1286I GDGCHC 1 cut(s) 20
Bsp143I GATC 2 cut(s) 30, 211
BspACI CCGC 1 cut(s) 85
BspCNI CTCAG 1 cut(s) 196
BspMI ACCTGC 1 cut(s) 155
BspPI GGATC 2 cut(s) 25, 219
BspQI GCTCTTC 1 cut(s) 8
BssECI CCNNGG 1 cut(s) 19
BssMI GATC 2 cut(s) 30, 211
Bst2UI CCWGG 2 cut(s) 21, 128
Bst4CI ACNGT 1 cut(s) 196
Bst6I CTCTTC 1 cut(s) 8
BstAPI GCANNNNNTGC 1 cut(s) 103
BstDEI CTNAG 1 cut(s) 204
BstF5I GGATG 1 cut(s) 193
BstKTI GATC 2 cut(s) 33, 214
BstMBI GATC 2 cut(s) 30, 211
BstMWI GCNNNNNNNGC 1 cut(s) 103
BstNI CCWGG 2 cut(s) 21, 128
BstSCI CCNGG 2 cut(s) 19, 126
BstV1I GCAGC 1 cut(s) 46
BstX2I RGATCY 1 cut(s) 30
BstYI RGATCY 1 cut(s) 30
BtsCI GGATG 1 cut(s) 193
BtsI GCAGTG 1 cut(s) 54
BtsIMutI CAGTG 1 cut(s) 54
BveI ACCTGC 1 cut(s) 155
CviJI RGCY 2 cut(s) 18, 232
CviKI_1 RGCY 2 cut(s) 18, 232
DdeI CTNAG 1 cut(s) 204
DpnI GATC 2 cut(s) 32, 213
DpnII GATC 2 cut(s) 30, 211
Eam1104I CTCTTC 1 cut(s) 8
EarI CTCTTC 1 cut(s) 8
Eco24I GRGCYC 1 cut(s) 20
EcoRII CCWGG 2 cut(s) 19, 126
EcoT38I GRGCYC 1 cut(s) 20
FaiI YATR 3 cut(s) 43, 65, 104
Fnu4HI GCNGC 1 cut(s) 60
FokI GGATG 1 cut(s) 200
FriOI GRGCYC 1 cut(s) 20
Fsp4HI GCNGC 1 cut(s) 60
GluI GCNGC 1 cut(s) 60
HindIII AAGCTT 1 cut(s) 230
HinfI GANTC 2 cut(s) 170, 206
HphI GGTGA 2 cut(s) 82, 179
Hpy188I TCNGA 1 cut(s) 211
Hpy188III TCNNGA 1 cut(s) 215
HpyCH4III ACNGT 1 cut(s) 196
HpyCH4V TGCA 4 cut(s) 97, 106, 164, 224
HpyF10VI GCNNNNNNNGC 1 cut(s) 103
HpyF3I CTNAG 1 cut(s) 204
Kzo9I GATC 2 cut(s) 30, 211
LguI GCTCTTC 1 cut(s) 8
Lsp1109I GCAGC 1 cut(s) 46
MaeIII GTNAC 1 cut(s) 70
MalI GATC 2 cut(s) 32, 213
MboI GATC 2 cut(s) 30, 211
MboII GAAGA 4 cut(s) 18, 25, 40, 165
MflI RGATCY 1 cut(s) 30
MhlI GDGCHC 1 cut(s) 20
MlyI GAGTC 1 cut(s) 215
MmeI TCCRAC 1 cut(s) 189
MnlI CCTC 1 cut(s) 44
MseI TTAA 2 cut(s) 182, 235
MslI CAYNNNNRTG 1 cut(s) 92
MspR9I CCNGG 2 cut(s) 21, 128
Mva1269I GAATGC 1 cut(s) 99
MvaI CCWGG 2 cut(s) 21, 128
MwoI GCNNNNNNNGC 1 cut(s) 103
NdeII GATC 2 cut(s) 30, 211
NmuCI GTSAC 1 cut(s) 70
PaqCI CACCTGC 1 cut(s) 155
PciSI GCTCTTC 1 cut(s) 8
PctI GAATGC 1 cut(s) 99
PfeI GAWTC 1 cut(s) 170
PkrI GCNGC 1 cut(s) 61
PleI GAGTC 1 cut(s) 214
PpsI GAGTC 1 cut(s) 214
Psp6I CCWGG 2 cut(s) 19, 126
PspGI CCWGG 2 cut(s) 19, 126
PsuI RGATCY 1 cut(s) 30
RseI CAYNNNNRTG 1 cut(s) 92
SapI GCTCTTC 1 cut(s) 8
SaqAI TTAA 2 cut(s) 182, 235
SatI GCNGC 1 cut(s) 60
Sau3AI GATC 2 cut(s) 30, 211
SchI GAGTC 1 cut(s) 215
ScrFI CCNGG 2 cut(s) 21, 128
SduI GDGCHC 1 cut(s) 20
SetI ASST 2 cut(s) 169, 234
SmiMI CAYNNNNRTG 1 cut(s) 92
SsiI CCGC 1 cut(s) 85
StyD4I CCNGG 2 cut(s) 19, 126
TaaI ACNGT 1 cut(s) 196
TaqI TCGA 1 cut(s) 214
TfiI GAWTC 1 cut(s) 170
Tru1I TTAA 2 cut(s) 182, 235
Tru9I TTAA 2 cut(s) 182, 235
TscAI CASTG 1 cut(s) 61
TseFI GTSAC 1 cut(s) 70
TseI GCWGC 1 cut(s) 59
Tsp45I GTSAC 1 cut(s) 70
TspDTI ATGAA 2 cut(s) 131, 204
TspGWI ACGGA 2 cut(s) 166, 171
TspRI CASTG 1 cut(s) 61
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.