Rw2G026580

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0001919
Physical Location & Seq
Reverse (-)
41168619 .. 41168929
311 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G026580.1

Sequence Viewer

Length: 231 bp
ATGTGGAAAGACAAGCCCCCTGGTTTGAAGATTCTGTGGGTCTGGACCCTCGGCACCGCCGCTGTTTTGGTTGCCAATGTGGTCAGGACCAGGGTCAGAGACATGGACATCCTTATGAACAACACTGAGGAGCATCATCAACAACAACAACAACAGGCGGCCGCCGCCGACATGGAGACACTTTTGTTGCCTGAATCCGATCAAGTGATTCGGGAAAAGAAATTCTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

76

Amino Acids

8.77

Weight (kDa)

6.05

Isoelectric Point (pI)

34.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 53
AciI CCGC 5 cut(s) 57, 60, 158, 162, 165
AcoI YGGCCR 1 cut(s) 159
AcsI RAATTY 1 cut(s) 221
AgsI TTSAA 1 cut(s) 28
AjnI CCWGG 2 cut(s) 19, 89
Alw26I GTCTC 2 cut(s) 93, 170
AoxI GGCC 1 cut(s) 159
ApoI RAATTY 1 cut(s) 221
AspS9I GGNCC 2 cut(s) 45, 87
AvaII GGWCC 2 cut(s) 45, 87
BanI GGYRCC 1 cut(s) 53
BciT130I CCWGG 2 cut(s) 21, 91
BcoDI GTCTC 2 cut(s) 93, 170
BisI GCNGC 4 cut(s) 60, 159, 162, 165
BlsI GCNGC 4 cut(s) 61, 160, 163, 166
Bme1390I CCNGG 2 cut(s) 21, 91
Bme18I GGWCC 2 cut(s) 45, 87
BmgT120I GGNCC 2 cut(s) 45, 87
BmiI GGNNCC 2 cut(s) 47, 55
BmrFI CCNGG 2 cut(s) 21, 91
BmsI GCATC 1 cut(s) 142
BoxI GACNNNNGTC 1 cut(s) 92
BsaJI CCNNGG 3 cut(s) 19, 49, 90
BseBI CCWGG 2 cut(s) 21, 91
BseDI CCNNGG 3 cut(s) 19, 49, 90
BseGI GGATG 1 cut(s) 108
BseMII CTCAG 1 cut(s) 117
BseRI GAGGAG 1 cut(s) 143
BseX3I CGGCCG 1 cut(s) 159
Bsh1285I CGRYCG 1 cut(s) 162
BshFI GGCC 1 cut(s) 161
BshNI GGYRCC 1 cut(s) 53
BsiEI CGRYCG 1 cut(s) 162
BsmAI GTCTC 2 cut(s) 93, 170
BsnI GGCC 1 cut(s) 161
Bsp143I GATC 1 cut(s) 199
BspACI CCGC 5 cut(s) 57, 60, 158, 162, 165
BspANI GGCC 1 cut(s) 161
BspCNI CTCAG 1 cut(s) 118
BspLI GGNNCC 2 cut(s) 47, 55
BspT107I GGYRCC 1 cut(s) 53
BssECI CCNNGG 3 cut(s) 19, 49, 90
BssMI GATC 1 cut(s) 199
Bst2UI CCWGG 2 cut(s) 21, 91
BstDEI CTNAG 2 cut(s) 126, 228
BstF5I GGATG 1 cut(s) 108
BstKTI GATC 1 cut(s) 202
BstMAI GTCTC 2 cut(s) 93, 170
BstMBI GATC 1 cut(s) 199
BstMCI CGRYCG 1 cut(s) 162
BstMWI GCNNNNNNNGC 1 cut(s) 164
BstNI CCWGG 2 cut(s) 21, 91
BstPAI GACNNNNGTC 1 cut(s) 92
BstSCI CCNGG 2 cut(s) 19, 89
BstZI CGGCCG 1 cut(s) 159
BsuRI GGCC 1 cut(s) 161
BtsCI GGATG 1 cut(s) 108
BtsIMutI CAGTG 1 cut(s) 123
CciNI GCGGCCGC 1 cut(s) 159
Cfr13I GGNCC 2 cut(s) 45, 87
CviAII CATG 2 cut(s) 103, 172
CviJI RGCY 2 cut(s) 16, 161
CviKI_1 RGCY 2 cut(s) 16, 161
DdeI CTNAG 2 cut(s) 126, 228
DpnI GATC 1 cut(s) 201
DpnII GATC 1 cut(s) 199
EaeI YGGCCR 1 cut(s) 159
EagI CGGCCG 1 cut(s) 159
EclXI CGGCCG 1 cut(s) 159
Eco47I GGWCC 2 cut(s) 45, 87
Eco52I CGGCCG 1 cut(s) 159
EcoRII CCWGG 2 cut(s) 19, 89
FaeI CATG 2 cut(s) 106, 175
FaiI YATR 3 cut(s) 104, 116, 173
FatI CATG 2 cut(s) 102, 171
Fnu4HI GCNGC 4 cut(s) 60, 159, 162, 165
FokI GGATG 1 cut(s) 95
Fsp4HI GCNGC 4 cut(s) 60, 159, 162, 165
GluI GCNGC 4 cut(s) 60, 159, 162, 165
HaeIII GGCC 1 cut(s) 161
Hin1II CATG 2 cut(s) 106, 175
HinfI GANTC 3 cut(s) 31, 194, 208
Hpy188I TCNGA 2 cut(s) 98, 199
Hpy188III TCNNGA 3 cut(s) 43, 85, 212
HpyF10VI GCNNNNNNNGC 1 cut(s) 164
HpyF3I CTNAG 2 cut(s) 126, 228
Hsp92II CATG 2 cut(s) 106, 175
Kzo9I GATC 1 cut(s) 199
LmnI GCTCC 1 cut(s) 130
LpnPI CCDG 8 cut(s) 6, 28, 33, 70, 76, 103, 140, 204
LweI GCATC 1 cut(s) 142
MalI GATC 1 cut(s) 201
MboI GATC 1 cut(s) 199
MboII GAAGA 1 cut(s) 40
MluCI AATT 1 cut(s) 221
MnlI CCTC 2 cut(s) 59, 121
MslI CAYNNNNRTG 1 cut(s) 113
MspA1I CMGCKG 1 cut(s) 62
MspR9I CCNGG 2 cut(s) 21, 91
MvaI CCWGG 2 cut(s) 21, 91
MwoI GCNNNNNNNGC 1 cut(s) 164
NdeII GATC 1 cut(s) 199
NlaIII CATG 2 cut(s) 106, 175
NlaIV GGNNCC 2 cut(s) 47, 55
NmeAIII GCCGAG 1 cut(s) 30
NotI GCGGCCGC 1 cut(s) 159
PfeI GAWTC 3 cut(s) 31, 194, 208
PkrI GCNGC 4 cut(s) 61, 160, 163, 166
PshAI GACNNNNGTC 1 cut(s) 92
Psp6I CCWGG 2 cut(s) 19, 89
PspGI CCWGG 2 cut(s) 19, 89
PspN4I GGNNCC 2 cut(s) 47, 55
PspPI GGNCC 2 cut(s) 45, 87
RseI CAYNNNNRTG 1 cut(s) 113
SatI GCNGC 4 cut(s) 60, 159, 162, 165
Sau3AI GATC 1 cut(s) 199
Sau96I GGNCC 2 cut(s) 45, 87
ScrFI CCNGG 2 cut(s) 21, 91
SfaNI GCATC 1 cut(s) 142
SinI GGWCC 2 cut(s) 45, 87
SmiMI CAYNNNNRTG 1 cut(s) 113
Sse9I AATT 1 cut(s) 221
SsiI CCGC 5 cut(s) 57, 60, 158, 162, 165
StyD4I CCNGG 2 cut(s) 19, 89
TasI AATT 1 cut(s) 221
TauI GCSGC 4 cut(s) 62, 161, 164, 167
TfiI GAWTC 3 cut(s) 31, 194, 208
TscAI CASTG 1 cut(s) 130
TspDTI ATGAA 1 cut(s) 131
TspRI CASTG 1 cut(s) 130
VpaK11BI GGWCC 2 cut(s) 45, 87
XapI RAATTY 1 cut(s) 221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.