Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001919

Physical Location & Seq

Genomic Coordinates Reverse (-)

1256912 .. 1258391

Gene Structure 1480 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015762

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGGACGACATATTCGGAGAGTCTCTGAACTTCGAAGAGATCCACATCAAGCAAGGCTTCGACGAAGGCCACAAAGACGGCCTGATCGCCGGAGAAGAGGAGGCCAGGCAAGTGGGCCTCAAGGTGGGCTTCGAAGTCGGCGAGGAGCTTGGGTTCTACAAGGGCTGCGTGGAGGTATGGAACTCTGTGATCCAGGTCGACCTGACCCGGTTCTCGACCCGGGTCCAGAAGGGCGTGAAGCAGATGGAGGAGTTGGTGGAGAGGTACCCAGTTATGGAACCCGAGAATGAGAGCGTGCAGGAGATAATGGAGGATTTGAGGTTGAAGTTTAAGGCGGTTTGTGCTTCTTTGGGTGTGAAATTGGAGTACAAAGGCAAGGAAGGGCTAGTGTCCTTGGTTGAATACAATGAAAAGAAGATTTTTGAGGTGAAGCTTAAAGATATGAAATCTGCTTTGACAACCCAGATAACAGAGGAAACTGATATATCTGAAGTCATAGAAACTGTGAATTTGGCGAGAATCCAGTACTGTCGAAAGGTGCCGAGTGAGATATTCCCACTAGAAACCAGATCAGCTGGACAGAGCATCACAGTGGCTGTGAACCTTTTCTTCACTTTCGTCATAGCACAGGCTTTTCATGCAATGCTATGCGCGTTCAAATTCGGGATCTTCCTGTTCTTTGCTGGTTGGATTACTGTCATGACCATCTTTGTTTATGTATTCCTGCCTGAAACGAAGGGAGTTCCTATTGAGGAGATGATACTCCTCTGGCGAAGGCACTGGTTTTGGAAGAAGATAGTGCCTGAATATGCCGAAGAAGATAGCAGTAGGGGAAACAATTCAACGGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0012505 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015146 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0015750 GO:0015751 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0034219 GO:0034220 GO:0042882 GO:0042900 GO:0042995 GO:0044464 GO:0046323 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944 GO:0090406 GO:0098655 GO:0098660 GO:0098662 GO:0120025 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

284

Amino Acids

32.5

Weight (kDa)

4.97

Isoelectric Point (pI)

44.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Yae1_N	PF09811	19 - 57	3.3e-08	Essential protein Yae1, N terminal
Sugar_tr	PF00083	180 - 254	6.7e-17	Sugar (and other) transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001919)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06010
fragaria_vesca	FvH4_6g00460
malus_domestica	MD04G1245200.v1.1 MD09G1092600.v1.1 MD12G1086700.v1.1 MD17G1082700.v1.1
prunus_persica	Prupe.6G361800_v2.0.a1 Prupe.6G361800_v2.0.a1
pyrus_communis	pycom04g21590 pycom12g23890
rosa_chinensis	RchiOBHm_Chr2g0127151 RchiOBHm_Chr3g0447831
rosa_laevigata	RLG00000015762 RLG00000018977 RLG00000018978 RLG00000021317
rosa_multiflora	Rmu_sc0005601.1_g000003 Rmu_sc0021156.1_g000003 Rmu_sc0026966.1_g000003 Rmu_ssc0000018.1_g000076
rosa_roxburghii	Rroxscaffold_2G00154490 Rroxscaffold_6G00426040
rosa_rugosa	Rorug02G0277000 Rorug02G0277100 Rorug02G0277200 Rorug02G0494200 Rorug02G0606200 Rorug02G0606300 Rorug02G0606400
rosa_samantha	Rh2AG327600 Rh2AG327700 Rh2AG560300 Rh2BG337700 Rh2BG573600 Rh2CG314600 Rh2CG543900 Rh2DG354600 Rh2DG354800 Rh2DG583600 Rh3AG005600 Rh3BG005300 Rh3CG005500 Rh3DG005800
rosa_wichuraiana	Rw0G013430 Rw2G026580 Rw3G000420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	264
AccB1I	GGYRCC	2 cut(s)	264, 538
AccI	GTMKAC	1 cut(s)	198
AccII	CGCG	1 cut(s)	653
AciI	CCGC	1 cut(s)	335
AclWI	GGATC	3 cut(s)	34, 184, 674
AcsI	RAATTY	2 cut(s)	508, 659
AcuI	CTGAAG	1 cut(s)	510
AfaI	GTAC	3 cut(s)	266, 368, 527
AfiI	CCNNNNNNNGG	2 cut(s)	124, 274
AgsI	TTSAA	4 cut(s)	325, 401, 658, 843
AjnI	CCWGG	2 cut(s)	104, 192
AloI	GAACNNNNNNTCC	2 cut(s)	137, 169
AluBI	AGCT	3 cut(s)	148, 433, 575
AluI	AGCT	3 cut(s)	148, 433, 575
Alw26I	GTCTC	1 cut(s)	27
AlwI	GGATC	3 cut(s)	34, 184, 674
AlwNI	CAGNNNCTG	1 cut(s)	596
Ama87I	CYCGRG	2 cut(s)	219, 281
AoxI	GGCC	4 cut(s)	67, 79, 102, 115
ApeKI	GCWGC	1 cut(s)	165
ApoI	RAATTY	2 cut(s)	508, 659
ArsI	GACNNNNNNTTYG	1 cut(s)	28
Asp700I	GAANNNNTTC	2 cut(s)	605, 838
Asp718I	GGTACC	1 cut(s)	264
AspLEI	GCGC	1 cut(s)	653
AspS9I	GGNCC	2 cut(s)	115, 223
AsuC2I	CCSGG	3 cut(s)	208, 220, 221
AsuHPI	GGTGA	1 cut(s)	439
AsuII	TTCGAA	2 cut(s)	33, 132
AvaI	CYCGRG	2 cut(s)	219, 281
AvaII	GGWCC	1 cut(s)	223
BanI	GGYRCC	2 cut(s)	264, 538
BbvI	GCAGC	1 cut(s)	152
BccI	CCATC	2 cut(s)	238, 713
BceAI	ACGGC	1 cut(s)	94
BciT130I	CCWGG	2 cut(s)	106, 194
BcnI	CCSGG	3 cut(s)	208, 220, 221
BcoDI	GTCTC	1 cut(s)	27
BfaI	CTAG	2 cut(s)	386, 560
BisI	GCNGC	1 cut(s)	166
BlsI	GCNGC	1 cut(s)	167
BmcAI	AGTACT	1 cut(s)	527
Bme1390I	CCNGG	5 cut(s)	106, 194, 208, 220, 221
Bme18I	GGWCC	1 cut(s)	223
BmeT110I	CYCGRG	2 cut(s)	219, 281
BmgT120I	GGNCC	2 cut(s)	115, 223
BmiI	GGNNCC	4 cut(s)	224, 266, 279, 540
BmrFI	CCNGG	5 cut(s)	106, 194, 208, 220, 221
BmrI	ACTGGG	1 cut(s)	263
BmsI	GCATC	1 cut(s)	594
BmuI	ACTGGG	1 cut(s)	263
BoxI	GACNNNNGTC	1 cut(s)	221
Bpu14I	TTCGAA	2 cut(s)	33, 132
BpuEI	CTTGAG	1 cut(s)	104
BpuMI	CCSGG	3 cut(s)	208, 220, 221
BsaBI	GATNNNNATC	1 cut(s)	44
BsaJI	CCNNGG	2 cut(s)	219, 393
BsaXI	ACNNNNNCTCC	2 cut(s)	137, 167
Bsc4I	CCNNNNNNNGG	2 cut(s)	124, 274
Bse1I	ACTGG	3 cut(s)	269, 523, 785
Bse3DI	GCAATG	1 cut(s)	648
Bse8I	GATNNNNATC	1 cut(s)	44
BseBI	CCWGG	2 cut(s)	106, 194
BseDI	CCNNGG	2 cut(s)	219, 393
BseJI	GATNNNNATC	1 cut(s)	44
BseLI	CCNNNNNNNGG	2 cut(s)	124, 274
BseMI	GCAATG	1 cut(s)	648
BseNI	ACTGG	3 cut(s)	269, 523, 785
BseRI	GAGGAG	5 cut(s)	113, 158, 263, 755, 767
BseXI	GCAGC	1 cut(s)	152
BsgI	GTGCAG	1 cut(s)	317
Bsh1236I	CGCG	1 cut(s)	653
BshFI	GGCC	4 cut(s)	69, 81, 104, 117
BshNI	GGYRCC	2 cut(s)	264, 538
BsiHKCI	CYCGRG	2 cut(s)	219, 281
BsiSI	CCGG	3 cut(s)	90, 208, 220
BslI	CCNNNNNNNGG	2 cut(s)	124, 274
BsmAI	GTCTC	1 cut(s)	27
BsnI	GGCC	4 cut(s)	69, 81, 104, 117
BsoBI	CYCGRG	2 cut(s)	219, 281
Bsp119I	TTCGAA	2 cut(s)	33, 132
Bsp143I	GATC	5 cut(s)	39, 84, 189, 569, 666
BspACI	CCGC	1 cut(s)	335
BspANI	GGCC	4 cut(s)	69, 81, 104, 117
BspFNI	CGCG	1 cut(s)	653
BspHI	TCATGA	1 cut(s)	699
BspLI	GGNNCC	4 cut(s)	224, 266, 279, 540
BspPI	GGATC	3 cut(s)	34, 184, 674
BspT104I	TTCGAA	2 cut(s)	33, 132
BspT107I	GGYRCC	2 cut(s)	264, 538
BsrDI	GCAATG	1 cut(s)	648
BsrI	ACTGG	3 cut(s)	269, 523, 785
BssECI	CCNNGG	2 cut(s)	219, 393
BssMI	GATC	5 cut(s)	39, 84, 189, 569, 666
BssT1I	CCWWGG	1 cut(s)	393
Bst2UI	CCWGG	2 cut(s)	106, 194
Bst4CI	ACNGT	5 cut(s)	505, 530, 592, 697, 847
Bst6I	CTCTTC	2 cut(s)	30, 90
BstBI	TTCGAA	2 cut(s)	33, 132
BstC8I	GCNNGC	1 cut(s)	296
BstFNI	CGCG	1 cut(s)	653
BstHHI	GCGC	1 cut(s)	653
BstKTI	GATC	5 cut(s)	42, 87, 192, 572, 669
BstMAI	GTCTC	1 cut(s)	27
BstMBI	GATC	5 cut(s)	39, 84, 189, 569, 666
BstMWI	GCNNNNNNNGC	2 cut(s)	341, 638
BstNI	CCWGG	2 cut(s)	106, 194
BstPAI	GACNNNNGTC	1 cut(s)	221
BstSCI	CCNGG	5 cut(s)	104, 192, 206, 218, 219
BstUI	CGCG	1 cut(s)	653
BstV1I	GCAGC	1 cut(s)	152
BstX2I	RGATCY	2 cut(s)	39, 666
BstXI	CCANNNNNNTGG	1 cut(s)	112
BstYI	RGATCY	2 cut(s)	39, 666
BsuRI	GGCC	4 cut(s)	69, 81, 104, 117
BtsIMutI	CAGTG	2 cut(s)	597, 778
Cac8I	GCNNGC	1 cut(s)	296
CaiI	CAGNNNCTG	1 cut(s)	596
CciI	TCATGA	1 cut(s)	699
CfoI	GCGC	1 cut(s)	653
Cfr13I	GGNCC	2 cut(s)	115, 223
Cfr9I	CCCGGG	1 cut(s)	219
Csp6I	GTAC	3 cut(s)	265, 367, 526
CviAII	CATG	2 cut(s)	638, 700
CviQI	GTAC	3 cut(s)	265, 367, 526
DpnI	GATC	5 cut(s)	41, 86, 191, 571, 668
DpnII	GATC	5 cut(s)	39, 84, 189, 569, 666
Eam1104I	CTCTTC	2 cut(s)	30, 90
EarI	CTCTTC	2 cut(s)	30, 90
Eco130I	CCWWGG	1 cut(s)	393
Eco47I	GGWCC	1 cut(s)	223
Eco57I	CTGAAG	1 cut(s)	510
Eco88I	CYCGRG	2 cut(s)	219, 281
EcoRII	CCWGG	2 cut(s)	104, 192
EcoT14I	CCWWGG	1 cut(s)	393
ErhI	CCWWGG	1 cut(s)	393
FaeI	CATG	2 cut(s)	641, 703
FalI	AAGNNNNNCTT	4 cut(s)	41, 73, 113, 145
FatI	CATG	2 cut(s)	637, 699
FblI	GTMKAC	1 cut(s)	198
Fnu4HI	GCNGC	1 cut(s)	166
Fsp4HI	GCNGC	1 cut(s)	166
FspBI	CTAG	2 cut(s)	386, 560
GlaI	GCGC	1 cut(s)	652
GluI	GCNGC	1 cut(s)	166
HaeIII	GGCC	4 cut(s)	69, 81, 104, 117
HapII	CCGG	3 cut(s)	90, 208, 220
HhaI	GCGC	1 cut(s)	653
Hin1II	CATG	2 cut(s)	641, 703
Hin6I	GCGC	1 cut(s)	651
HinP1I	GCGC	1 cut(s)	651
HincII	GTYRAC	1 cut(s)	199
HindII	GTYRAC	1 cut(s)	199
HindIII	AAGCTT	1 cut(s)	431
HinfI	GANTC	2 cut(s)	20, 519
HpaII	CCGG	3 cut(s)	90, 208, 220
HphI	GGTGA	1 cut(s)	439
Hpy166II	GTNNAC	2 cut(s)	199, 601
Hpy188I	TCNGA	3 cut(s)	17, 27, 490
Hpy188III	TCNNGA	4 cut(s)	214, 226, 664, 700
Hpy8I	GTNNAC	2 cut(s)	199, 601
Hpy99I	CGWCG	1 cut(s)	65
HpyAV	CCTTC	5 cut(s)	59, 223, 374, 730, 768
HpyCH4III	ACNGT	5 cut(s)	505, 530, 592, 697, 847
HpyCH4V	TGCA	2 cut(s)	298, 641
HpyF10VI	GCNNNNNNNGC	2 cut(s)	341, 638
Hsp92II	CATG	2 cut(s)	641, 703
HspAI	GCGC	1 cut(s)	651
KpnI	GGTACC	1 cut(s)	268
Kzo9I	GATC	5 cut(s)	39, 84, 189, 569, 666
LmnI	GCTCC	1 cut(s)	145
Lsp1109I	GCAGC	1 cut(s)	152
LweI	GCATC	1 cut(s)	594
MaeI	CTAG	2 cut(s)	386, 560
MalI	GATC	5 cut(s)	41, 86, 191, 571, 668
MboI	GATC	5 cut(s)	39, 84, 189, 569, 666
MboII	GAAGA	9 cut(s)	47, 107, 427, 601, 661, 802, 805, 827, 830
MflI	RGATCY	2 cut(s)	39, 666
MluCI	AATT	4 cut(s)	359, 508, 659, 838
MlyI	GAGTC	1 cut(s)	29
MmeI	TCCRAC	1 cut(s)	668
MroXI	GAANNNNTTC	2 cut(s)	605, 838
MseI	TTAA	2 cut(s)	330, 435
MslI	CAYNNNNRTG	1 cut(s)	590
MspA1I	CMGCKG	1 cut(s)	575
MspI	CCGG	3 cut(s)	90, 208, 220
MspR9I	CCNGG	5 cut(s)	106, 194, 208, 220, 221
MvaI	CCWGG	2 cut(s)	106, 194
MvnI	CGCG	1 cut(s)	653
MwoI	GCNNNNNNNGC	2 cut(s)	341, 638
NciI	CCSGG	3 cut(s)	208, 220, 221
NdeII	GATC	5 cut(s)	39, 84, 189, 569, 666
NlaIII	CATG	2 cut(s)	641, 703
NlaIV	GGNNCC	4 cut(s)	224, 266, 279, 540
NmeAIII	GCCGAG	1 cut(s)	567
NspV	TTCGAA	2 cut(s)	33, 132
PagI	TCATGA	1 cut(s)	699
PcsI	WCGNNNNNNNCGW	1 cut(s)	138
PdmI	GAANNNNTTC	2 cut(s)	605, 838
PfeI	GAWTC	1 cut(s)	519
PkrI	GCNGC	1 cut(s)	167
PleI	GAGTC	1 cut(s)	28
PpsI	GAGTC	1 cut(s)	28
PshAI	GACNNNNGTC	1 cut(s)	221
Psp6I	CCWGG	2 cut(s)	104, 192
PspGI	CCWGG	2 cut(s)	104, 192
PspN4I	GGNNCC	4 cut(s)	224, 266, 279, 540
PspPI	GGNCC	2 cut(s)	115, 223
PstNI	CAGNNNCTG	1 cut(s)	596
PsuI	RGATCY	2 cut(s)	39, 666
PvuII	CAGCTG	1 cut(s)	575
RsaI	GTAC	3 cut(s)	266, 368, 527
RsaNI	GTAC	3 cut(s)	265, 367, 526
RseI	CAYNNNNRTG	1 cut(s)	590
SalI	GTCGAC	1 cut(s)	197
SaqAI	TTAA	2 cut(s)	330, 435
SatI	GCNGC	1 cut(s)	166
Sau3AI	GATC	5 cut(s)	39, 84, 189, 569, 666
Sau96I	GGNCC	2 cut(s)	115, 223
ScaI	AGTACT	1 cut(s)	527
SchI	GAGTC	1 cut(s)	29
ScrFI	CCNGG	5 cut(s)	106, 194, 208, 220, 221
SfaNI	GCATC	1 cut(s)	594
SfuI	TTCGAA	2 cut(s)	33, 132
SinI	GGWCC	1 cut(s)	223
SmaI	CCCGGG	1 cut(s)	221
SmiMI	CAYNNNNRTG	1 cut(s)	590
SmlI	CTYRAG	1 cut(s)	119
SmoI	CTYRAG	1 cut(s)	119
Sse9I	AATT	4 cut(s)	359, 508, 659, 838
SsiI	CCGC	1 cut(s)	335
SspMI	CTAG	2 cut(s)	386, 560
StyD4I	CCNGG	5 cut(s)	104, 192, 206, 218, 219
StyI	CCWWGG	1 cut(s)	393
TaaI	ACNGT	5 cut(s)	505, 530, 592, 697, 847
TaqI	TCGA	6 cut(s)	33, 60, 132, 198, 215, 532
TasI	AATT	4 cut(s)	359, 508, 659, 838
TatI	WGTACW	2 cut(s)	366, 525
TfiI	GAWTC	1 cut(s)	519
Tru1I	TTAA	2 cut(s)	330, 435
Tru9I	TTAA	2 cut(s)	330, 435
TscAI	CASTG	2 cut(s)	597, 785
TseI	GCWGC	1 cut(s)	165
TspDTI	ATGAA	3 cut(s)	423, 458, 626
TspMI	CCCGGG	1 cut(s)	219
TspRI	CASTG	2 cut(s)	597, 785
VpaK11BI	GGWCC	1 cut(s)	223
XapI	RAATTY	2 cut(s)	508, 659
XmaI	CCCGGG	1 cut(s)	219
XmiI	GTMKAC	1 cut(s)	198
XmnI	GAANNNNTTC	2 cut(s)	605, 838
XspI	CTAG	2 cut(s)	386, 560
ZrmI	AGTACT	1 cut(s)	527

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.