RLG00000018977

Formiminotransferase domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0001919
Physical Location & Seq
Reverse (-)
43918014 .. 43919267
1254 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000018977

Sequence Viewer

Length: 666 bp
ATGGACGACATATTCGGAGAGTCTCTGAACTTAGAAGAGATCCACATCAAGCAAGGCTTCGACGAAGGCCACAAAGACGGCCTGATCGCCGGAAAAGAGGAGGCCAGGCAAGTGGGCCTCAAGGTGGGCTTCGAGGTCGGCGAGGAGCTCGGGTTCTACAAGGGTTGCGTGGAGGTATGGAACTCTGCGGTCCGGGTCGACCCAACCCGGTTCTCGACCCGGGTCCAGAAGGGCGTGAAGCAGATGGAGGAGTTGGTGGAGAGGTACCCAGTTATGGAACCCGAGAATGAGAGCGTGCAGGAGATAATGGAGGATTTGAGGTTGAAGTTTAAGGCGGTTTGTGCTTCTTTGGGTGTGAAATTGGAGTACAAAGGGTACCTGAGAGCTTCTTCTTCTGGGGCTAAAGACGTTGCAGCAGCCAAGGTTGCAGGAGGAAGAATGTGGAGAGACAAGCCCCCCGGGTTGAAGATTCTGTGGGTCTGGACCCTCGGCACCGCCGCTGTTTTGGTTGCCAATGTGGTCAGGACCAGGGTGAGAGACATGGACACACTTATGAACAACACTGAGGAGCATCATCATCAACAACAACACAGCGCTGCCGCCGACTCCGAGACACTTTTGGTGCCTGAATCCAATAAAGTGATTTGGGAAGAGAAATCCTCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FTCD_N Yae1_N

Protein Analysis

222

Amino Acids

24.77

Weight (kDa)

5.49

Isoelectric Point (pI)

37.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Yae1_N PF09811 19 - 57 3.5e-08 Essential protein Yae1, N terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 264, 375
AccB1I GGYRCC 4 cut(s) 264, 375, 491, 622
AccI GTMKAC 1 cut(s) 198
AciI CCGC 5 cut(s) 188, 335, 495, 498, 600
AclWI GGATC 1 cut(s) 34
AfaI GTAC 3 cut(s) 266, 368, 377
AfeI AGCGCT 1 cut(s) 595
AfiI CCNNNNNNNGG 2 cut(s) 124, 274
AgsI TTSAA 2 cut(s) 325, 466
AjnI CCWGG 2 cut(s) 104, 527
AloI GAACNNNNNNTCC 2 cut(s) 137, 169
AluBI AGCT 2 cut(s) 148, 386
AluI AGCT 2 cut(s) 148, 386
Alw21I GWGCWC 1 cut(s) 150
Alw26I GTCTC 4 cut(s) 27, 441, 531, 605
AlwI GGATC 1 cut(s) 34
Ama87I CYCGRG 4 cut(s) 149, 219, 281, 458
Aor51HI AGCGCT 1 cut(s) 595
AoxI GGCC 4 cut(s) 67, 79, 102, 115
ApeKI GCWGC 3 cut(s) 413, 416, 596
ArsI GACNNNNNNTTYG 1 cut(s) 28
Asp718I GGTACC 2 cut(s) 264, 375
AspLEI GCGC 1 cut(s) 596
AspS9I GGNCC 5 cut(s) 115, 190, 223, 483, 525
AsuC2I CCSGG 6 cut(s) 194, 208, 220, 221, 459, 460
AsuHPI GGTGA 1 cut(s) 544
AvaI CYCGRG 4 cut(s) 149, 219, 281, 458
AvaII GGWCC 4 cut(s) 190, 223, 483, 525
BanI GGYRCC 4 cut(s) 264, 375, 491, 622
BanII GRGCYC 1 cut(s) 150
Bbv12I GWGCWC 1 cut(s) 150
BbvI GCAGC 3 cut(s) 425, 428, 583
BccI CCATC 1 cut(s) 238
BceAI ACGGC 1 cut(s) 94
BciT130I CCWGG 2 cut(s) 106, 529
BcnI CCSGG 6 cut(s) 194, 208, 220, 221, 459, 460
BcoDI GTCTC 4 cut(s) 27, 441, 531, 605
BfoI RGCGCY 1 cut(s) 597
BisI GCNGC 5 cut(s) 414, 417, 498, 597, 600
BlsI GCNGC 5 cut(s) 415, 418, 499, 598, 601
Bme1390I CCNGG 8 cut(s) 106, 194, 208, 220, 221, 459, 460, 529
Bme18I GGWCC 4 cut(s) 190, 223, 483, 525
BmeT110I CYCGRG 4 cut(s) 149, 219, 281, 458
BmgT120I GGNCC 5 cut(s) 115, 190, 223, 483, 525
BmiI GGNNCC 7 cut(s) 224, 266, 279, 377, 485, 493, 624
BmrFI CCNGG 8 cut(s) 106, 194, 208, 220, 221, 459, 460, 529
BmrI ACTGGG 1 cut(s) 263
BmsI GCATC 1 cut(s) 580
BmuI ACTGGG 1 cut(s) 263
BoxI GACNNNNGTC 1 cut(s) 221
BplI GAGNNNNNCTC 1 cut(s) 644
BpuEI CTTGAG 1 cut(s) 104
BpuMI CCSGG 6 cut(s) 194, 208, 220, 221, 459, 460
BsaBI GATNNNNATC 1 cut(s) 44
BsaJI CCNNGG 6 cut(s) 219, 420, 457, 458, 487, 528
BsaXI ACNNNNNCTCC 2 cut(s) 137, 167
Bsc4I CCNNNNNNNGG 2 cut(s) 124, 274
Bse1I ACTGG 1 cut(s) 269
Bse8I GATNNNNATC 1 cut(s) 44
BseBI CCWGG 2 cut(s) 106, 529
BseDI CCNNGG 6 cut(s) 219, 420, 457, 458, 487, 528
BseJI GATNNNNATC 1 cut(s) 44
BseLI CCNNNNNNNGG 2 cut(s) 124, 274
BseMII CTCAG 2 cut(s) 371, 555
BseNI ACTGG 1 cut(s) 269
BseRI GAGGAG 4 cut(s) 113, 158, 263, 581
BseXI GCAGC 3 cut(s) 425, 428, 583
BsgI GTGCAG 1 cut(s) 317
BshFI GGCC 4 cut(s) 69, 81, 104, 117
BshNI GGYRCC 4 cut(s) 264, 375, 491, 622
BsiHKAI GWGCWC 1 cut(s) 150
BsiHKCI CYCGRG 4 cut(s) 149, 219, 281, 458
BsiSI CCGG 5 cut(s) 90, 193, 208, 220, 459
BslI CCNNNNNNNGG 2 cut(s) 124, 274
BsmAI GTCTC 4 cut(s) 27, 441, 531, 605
BsnI GGCC 4 cut(s) 69, 81, 104, 117
BsoBI CYCGRG 4 cut(s) 149, 219, 281, 458
Bsp1286I GDGCHC 1 cut(s) 150
Bsp143I GATC 2 cut(s) 39, 84
BspACI CCGC 5 cut(s) 188, 335, 495, 498, 600
BspANI GGCC 4 cut(s) 69, 81, 104, 117
BspCNI CTCAG 2 cut(s) 372, 556
BspLI GGNNCC 7 cut(s) 224, 266, 279, 377, 485, 493, 624
BspPI GGATC 1 cut(s) 34
BspT107I GGYRCC 4 cut(s) 264, 375, 491, 622
BsrI ACTGG 1 cut(s) 269
BssECI CCNNGG 6 cut(s) 219, 420, 457, 458, 487, 528
BssMI GATC 2 cut(s) 39, 84
BssT1I CCWWGG 1 cut(s) 420
Bst2UI CCWGG 2 cut(s) 106, 529
Bst6I CTCTTC 2 cut(s) 30, 645
BstC8I GCNNGC 1 cut(s) 296
BstDEI CTNAG 3 cut(s) 31, 380, 564
BstH2I RGCGCY 1 cut(s) 597
BstHHI GCGC 1 cut(s) 596
BstKTI GATC 2 cut(s) 42, 87
BstMAI GTCTC 4 cut(s) 27, 441, 531, 605
BstMBI GATC 2 cut(s) 39, 84
BstMWI GCNNNNNNNGC 2 cut(s) 341, 425
BstNI CCWGG 2 cut(s) 106, 529
BstPAI GACNNNNGTC 1 cut(s) 221
BstSCI CCNGG 8 cut(s) 104, 192, 206, 218, 219, 457, 458, 527
BstV1I GCAGC 3 cut(s) 425, 428, 583
BstX2I RGATCY 1 cut(s) 39
BstXI CCANNNNNNTGG 1 cut(s) 112
BstYI RGATCY 1 cut(s) 39
BsuRI GGCC 4 cut(s) 69, 81, 104, 117
BtsIMutI CAGTG 1 cut(s) 561
Cac8I GCNNGC 1 cut(s) 296
CfoI GCGC 1 cut(s) 596
Cfr13I GGNCC 5 cut(s) 115, 190, 223, 483, 525
Cfr9I CCCGGG 2 cut(s) 219, 458
CpoI CGGWCCG 1 cut(s) 190
Csp6I GTAC 3 cut(s) 265, 367, 376
CspI CGGWCCG 1 cut(s) 190
CviAII CATG 1 cut(s) 541
CviQI GTAC 3 cut(s) 265, 367, 376
DdeI CTNAG 3 cut(s) 31, 380, 564
DpnI GATC 2 cut(s) 41, 86
DpnII GATC 2 cut(s) 39, 84
Eam1104I CTCTTC 2 cut(s) 30, 645
EarI CTCTTC 2 cut(s) 30, 645
Ecl136II GAGCTC 1 cut(s) 148
Eco130I CCWWGG 1 cut(s) 420
Eco24I GRGCYC 1 cut(s) 150
Eco47I GGWCC 4 cut(s) 190, 223, 483, 525
Eco47III AGCGCT 1 cut(s) 595
Eco53kI GAGCTC 1 cut(s) 148
Eco88I CYCGRG 4 cut(s) 149, 219, 281, 458
EcoICRI GAGCTC 1 cut(s) 148
EcoRII CCWGG 2 cut(s) 104, 527
EcoT14I CCWWGG 1 cut(s) 420
EcoT38I GRGCYC 1 cut(s) 150
ErhI CCWWGG 1 cut(s) 420
FaeI CATG 1 cut(s) 544
FaiI YATR 5 cut(s) 11, 178, 275, 542, 554
FalI AAGNNNNNCTT 4 cut(s) 41, 73, 113, 145
FatI CATG 1 cut(s) 540
FblI GTMKAC 1 cut(s) 198
Fnu4HI GCNGC 5 cut(s) 414, 417, 498, 597, 600
FriOI GRGCYC 1 cut(s) 150
Fsp4HI GCNGC 5 cut(s) 414, 417, 498, 597, 600
GlaI GCGC 1 cut(s) 595
GluI GCNGC 5 cut(s) 414, 417, 498, 597, 600
HaeII RGCGCY 1 cut(s) 597
HaeIII GGCC 4 cut(s) 69, 81, 104, 117
HapII CCGG 5 cut(s) 90, 193, 208, 220, 459
HhaI GCGC 1 cut(s) 596
Hin1II CATG 1 cut(s) 544
Hin6I GCGC 1 cut(s) 594
HinP1I GCGC 1 cut(s) 594
HincII GTYRAC 1 cut(s) 199
HindII GTYRAC 1 cut(s) 199
HinfI GANTC 4 cut(s) 20, 469, 605, 629
HpaII CCGG 5 cut(s) 90, 193, 208, 220, 459
HphI GGTGA 1 cut(s) 544
Hpy166II GTNNAC 1 cut(s) 199
Hpy188I TCNGA 3 cut(s) 17, 27, 610
Hpy188III TCNNGA 4 cut(s) 214, 226, 481, 523
Hpy8I GTNNAC 1 cut(s) 199
Hpy99I CGWCG 1 cut(s) 65
HpyAV CCTTC 2 cut(s) 59, 223
HpyCH4IV ACGT 1 cut(s) 408
HpyCH4V TGCA 3 cut(s) 298, 413, 428
HpyF10VI GCNNNNNNNGC 2 cut(s) 341, 425
HpyF3I CTNAG 3 cut(s) 31, 380, 564
HpySE526I ACGT 1 cut(s) 408
Hsp92II CATG 1 cut(s) 544
HspAI GCGC 1 cut(s) 594
KpnI GGTACC 2 cut(s) 268, 379
Kzo9I GATC 2 cut(s) 39, 84
LmnI GCTCC 2 cut(s) 145, 568
Lsp1109I GCAGC 3 cut(s) 425, 428, 583
LweI GCATC 1 cut(s) 580
MaeII ACGT 1 cut(s) 408
MalI GATC 2 cut(s) 41, 86
MboI GATC 2 cut(s) 39, 84
MboII GAAGA 6 cut(s) 47, 381, 384, 447, 478, 662
MflI RGATCY 1 cut(s) 39
MhlI GDGCHC 1 cut(s) 150
MluCI AATT 1 cut(s) 359
MlyI GAGTC 2 cut(s) 29, 599
MseI TTAA 1 cut(s) 330
MslI CAYNNNNRTG 1 cut(s) 551
MspA1I CMGCKG 1 cut(s) 500
MspI CCGG 5 cut(s) 90, 193, 208, 220, 459
MspR9I CCNGG 8 cut(s) 106, 194, 208, 220, 221, 459, 460, 529
MvaI CCWGG 2 cut(s) 106, 529
MwoI GCNNNNNNNGC 2 cut(s) 341, 425
NciI CCSGG 6 cut(s) 194, 208, 220, 221, 459, 460
NdeII GATC 2 cut(s) 39, 84
NlaIII CATG 1 cut(s) 544
NlaIV GGNNCC 7 cut(s) 224, 266, 279, 377, 485, 493, 624
NmeAIII GCCGAG 1 cut(s) 468
PcsI WCGNNNNNNNCGW 1 cut(s) 138
PfeI GAWTC 2 cut(s) 469, 629
PkrI GCNGC 5 cut(s) 415, 418, 499, 598, 601
PleI GAGTC 2 cut(s) 28, 599
PpsI GAGTC 2 cut(s) 28, 599
PshAI GACNNNNGTC 1 cut(s) 221
Psp124BI GAGCTC 1 cut(s) 150
Psp6I CCWGG 2 cut(s) 104, 527
PspGI CCWGG 2 cut(s) 104, 527
PspN4I GGNNCC 7 cut(s) 224, 266, 279, 377, 485, 493, 624
PspPI GGNCC 5 cut(s) 115, 190, 223, 483, 525
PsuI RGATCY 1 cut(s) 39
RsaI GTAC 3 cut(s) 266, 368, 377
RsaNI GTAC 3 cut(s) 265, 367, 376
RseI CAYNNNNRTG 1 cut(s) 551
Rsr2I CGGWCCG 1 cut(s) 190
RsrII CGGWCCG 1 cut(s) 190
SacI GAGCTC 1 cut(s) 150
SalI GTCGAC 1 cut(s) 197
SaqAI TTAA 1 cut(s) 330
SatI GCNGC 5 cut(s) 414, 417, 498, 597, 600
Sau3AI GATC 2 cut(s) 39, 84
Sau96I GGNCC 5 cut(s) 115, 190, 223, 483, 525
SchI GAGTC 2 cut(s) 29, 599
ScrFI CCNGG 8 cut(s) 106, 194, 208, 220, 221, 459, 460, 529
SduI GDGCHC 1 cut(s) 150
SfaNI GCATC 1 cut(s) 580
SinI GGWCC 4 cut(s) 190, 223, 483, 525
SmaI CCCGGG 2 cut(s) 221, 460
SmiMI CAYNNNNRTG 1 cut(s) 551
SmlI CTYRAG 1 cut(s) 119
SmoI CTYRAG 1 cut(s) 119
Sse9I AATT 1 cut(s) 359
SsiI CCGC 5 cut(s) 188, 335, 495, 498, 600
SstI GAGCTC 1 cut(s) 150
StyD4I CCNGG 8 cut(s) 104, 192, 206, 218, 219, 457, 458, 527
StyI CCWWGG 1 cut(s) 420
TaiI ACGT 1 cut(s) 411
TaqI TCGA 4 cut(s) 60, 132, 198, 215
TasI AATT 1 cut(s) 359
TatI WGTACW 1 cut(s) 366
TauI GCSGC 2 cut(s) 500, 602
TfiI GAWTC 2 cut(s) 469, 629
Tru1I TTAA 1 cut(s) 330
Tru9I TTAA 1 cut(s) 330
TscAI CASTG 1 cut(s) 568
TseI GCWGC 3 cut(s) 413, 416, 596
TspDTI ATGAA 1 cut(s) 569
TspMI CCCGGG 2 cut(s) 219, 458
TspRI CASTG 1 cut(s) 568
VpaK11BI GGWCC 4 cut(s) 190, 223, 483, 525
XmaI CCCGGG 2 cut(s) 219, 458
XmiI GTMKAC 1 cut(s) 198
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.