Rmu_sc0021156.1_g000003

Formiminotransferase domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0021156.1
OG0001919
Physical Location & Seq
Forward (+)
5650 .. 5922
273 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0021156.1_g000003.1.cds

Sequence Viewer

Length: 273 bp
ctgaaaaagaggacgctaagcaactgggcctcaaagtgggcttcgaggtcgggtgagaagcctgggttttacaagggctacctcgacctatggaactctgcaatatgggtcgacccgacccagttatcgacccgggtccaaaagggagtgaagaaaattgaggagttggtggagaggtacctagttatggaactcgagaataagagtgtgcaggagataatggaggatttgaggttgaagtttaaggcggtttgtgcttctttgggtgtgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FTCD_N Yae1_N

Protein Analysis

90

Amino Acids

10.42

Weight (kDa)

9.48

Isoelectric Point (pI)

29.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 177
AccB1I GGYRCC 1 cut(s) 177
AccI GTMKAC 1 cut(s) 111
AciI CCGC 1 cut(s) 248
AfaI GTAC 1 cut(s) 179
AfiI CCNNNNNNNGG 2 cut(s) 36, 187
AgsI TTSAA 1 cut(s) 238
AjnI CCWGG 1 cut(s) 61
Ama87I CYCGRG 2 cut(s) 132, 194
AoxI GGCC 1 cut(s) 27
Asp718I GGTACC 1 cut(s) 177
AspS9I GGNCC 2 cut(s) 27, 136
AsuC2I CCSGG 2 cut(s) 133, 134
AsuHPI GGTGA 1 cut(s) 65
AvaI CYCGRG 2 cut(s) 132, 194
AvaII GGWCC 1 cut(s) 136
BanI GGYRCC 1 cut(s) 177
BciT130I CCWGG 1 cut(s) 63
BcnI CCSGG 2 cut(s) 133, 134
BfaI CTAG 1 cut(s) 182
BlpI GCTNAGC 1 cut(s) 17
Bme1390I CCNGG 3 cut(s) 63, 133, 134
Bme18I GGWCC 1 cut(s) 136
BmeT110I CYCGRG 2 cut(s) 132, 194
BmgT120I GGNCC 2 cut(s) 27, 136
BmiI GGNNCC 2 cut(s) 137, 179
BmrFI CCNGG 3 cut(s) 63, 133, 134
BmrI ACTGGG 2 cut(s) 34, 115
BmuI ACTGGG 2 cut(s) 34, 115
BoxI GACNNNNGTC 1 cut(s) 134
Bpu1102I GCTNAGC 1 cut(s) 17
BpuMI CCSGG 2 cut(s) 133, 134
BsaJI CCNNGG 2 cut(s) 62, 132
Bsc4I CCNNNNNNNGG 2 cut(s) 36, 187
Bse1I ACTGG 2 cut(s) 29, 121
BseBI CCWGG 1 cut(s) 63
BseDI CCNNGG 2 cut(s) 62, 132
BseLI CCNNNNNNNGG 2 cut(s) 36, 187
BseNI ACTGG 2 cut(s) 29, 121
BseRI GAGGAG 1 cut(s) 176
BsgI GTGCAG 1 cut(s) 230
BshFI GGCC 1 cut(s) 29
BshNI GGYRCC 1 cut(s) 177
BsiHKCI CYCGRG 2 cut(s) 132, 194
BsiSI CCGG 1 cut(s) 133
BslI CCNNNNNNNGG 2 cut(s) 36, 187
BsnI GGCC 1 cut(s) 29
BsoBI CYCGRG 2 cut(s) 132, 194
Bsp1720I GCTNAGC 1 cut(s) 17
BspACI CCGC 1 cut(s) 248
BspANI GGCC 1 cut(s) 29
BspLI GGNNCC 2 cut(s) 137, 179
BspT107I GGYRCC 1 cut(s) 177
BsrI ACTGG 2 cut(s) 29, 121
BssECI CCNNGG 2 cut(s) 62, 132
Bst2UI CCWGG 1 cut(s) 63
BstDEI CTNAG 1 cut(s) 17
BstMWI GCNNNNNNNGC 1 cut(s) 254
BstNI CCWGG 1 cut(s) 63
BstPAI GACNNNNGTC 1 cut(s) 134
BstSCI CCNGG 3 cut(s) 61, 131, 132
BsuRI GGCC 1 cut(s) 29
Cfr13I GGNCC 2 cut(s) 27, 136
Cfr9I CCCGGG 1 cut(s) 132
CseI GACGC 1 cut(s) 22
Csp6I GTAC 1 cut(s) 178
CviJI RGCY 4 cut(s) 29, 41, 61, 78
CviKI_1 RGCY 4 cut(s) 29, 41, 61, 78
CviQI GTAC 1 cut(s) 178
DdeI CTNAG 1 cut(s) 17
Eco47I GGWCC 1 cut(s) 136
Eco88I CYCGRG 2 cut(s) 132, 194
EcoRII CCWGG 1 cut(s) 61
FaiI YATR 3 cut(s) 91, 106, 188
FblI GTMKAC 1 cut(s) 111
FspBI CTAG 1 cut(s) 182
HaeIII GGCC 1 cut(s) 29
HapII CCGG 1 cut(s) 133
HgaI GACGC 1 cut(s) 22
HincII GTYRAC 1 cut(s) 112
HindII GTYRAC 1 cut(s) 112
HpaII CCGG 1 cut(s) 133
HphI GGTGA 1 cut(s) 65
Hpy166II GTNNAC 1 cut(s) 112
Hpy188III TCNNGA 1 cut(s) 196
Hpy8I GTNNAC 1 cut(s) 112
HpyCH4V TGCA 2 cut(s) 101, 211
HpyF10VI GCNNNNNNNGC 1 cut(s) 254
HpyF3I CTNAG 1 cut(s) 17
KpnI GGTACC 1 cut(s) 181
LpnPI CCDG 6 cut(s) 10, 48, 75, 134, 146, 197
MaeI CTAG 1 cut(s) 182
MboII GAAGA 1 cut(s) 163
MluCI AATT 1 cut(s) 156
MnlI CCTC 8 cut(s) 3, 39, 40, 92, 154, 168, 217, 225
MseI TTAA 1 cut(s) 243
MspI CCGG 1 cut(s) 133
MspR9I CCNGG 3 cut(s) 63, 133, 134
MvaI CCWGG 1 cut(s) 63
MwoI GCNNNNNNNGC 1 cut(s) 254
NciI CCSGG 2 cut(s) 133, 134
NlaIV GGNNCC 2 cut(s) 137, 179
PaeR7I CTCGAG 1 cut(s) 194
PshAI GACNNNNGTC 1 cut(s) 134
Psp6I CCWGG 1 cut(s) 61
PspGI CCWGG 1 cut(s) 61
PspN4I GGNNCC 2 cut(s) 137, 179
PspPI GGNCC 2 cut(s) 27, 136
RsaI GTAC 1 cut(s) 179
RsaNI GTAC 1 cut(s) 178
SalI GTCGAC 1 cut(s) 110
SaqAI TTAA 1 cut(s) 243
Sau96I GGNCC 2 cut(s) 27, 136
ScrFI CCNGG 3 cut(s) 63, 133, 134
SetI ASST 6 cut(s) 50, 84, 90, 179, 183, 236
Sfr274I CTCGAG 1 cut(s) 194
SinI GGWCC 1 cut(s) 136
SlaI CTCGAG 1 cut(s) 194
SmaI CCCGGG 1 cut(s) 134
SmlI CTYRAG 1 cut(s) 194
SmoI CTYRAG 1 cut(s) 194
Sse9I AATT 1 cut(s) 156
SsiI CCGC 1 cut(s) 248
SspMI CTAG 1 cut(s) 182
StyD4I CCNGG 3 cut(s) 61, 131, 132
TaqI TCGA 5 cut(s) 44, 84, 111, 128, 195
TasI AATT 1 cut(s) 156
Tru1I TTAA 1 cut(s) 243
Tru9I TTAA 1 cut(s) 243
TspMI CCCGGG 1 cut(s) 132
VpaK11BI GGWCC 1 cut(s) 136
XhoI CTCGAG 1 cut(s) 194
XmaI CCCGGG 1 cut(s) 132
XmiI GTMKAC 1 cut(s) 111
XspI CTAG 1 cut(s) 182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.