Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001919

Physical Location & Seq

Genomic Coordinates Reverse (-)

72374695 .. 72375906

Gene Structure 1212 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0606300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGGCATCCAAATCTAATCTTTTTCTCTTTACTATCACTCTCCTGCTCGCCCTTCTTACTCTCCTCTCTTATGCAACTGCTTCTCATCCCCACAACAAGAGCTCTTCCCCATTTGAGTTCCTTGAACATCTCAAGGGTTGCCACAAAGGTGATAAGGTCAAAGGCATCAATGATCTCAAAAAATACCTTGAAAAGTACGGTTACTTGAACTACAAGAACCACAGTCATTCGGACGATGATGATTTTGACGACCTTTTGGAGGAAGCCATCAAGACTTACCAGATCAATTACCACCTCAAGTCCACCGGAACATTAGACGGCAAAACAGTGTCGAAGATGATGACACCTCGTTGTGGCATGCCGGATATCATCAATGGCACCTCGTCCATGAGATCAGCCAAGAAAAGGCACCACCATGGTTCAATTCATACCACTGCTCACTACTCATTTTTCCAGGGAAATCTAAAATGGCCTTCTTCTAAATACCATCTCACTTACGGTTTTCTCCCCAGCACCCCATCTGAAGCCATGGGCGCTGTCGCACGGGCTTTCGCAACATGGGCTGGAAACACTCACTTCACGTTCAGCCAGTCCCAAAGTTACGAGAATGCGGATTTGAAGATTAGTTTTCATAAGGGTGATCATGGAGACGGGAATTCATTTGACGGCCCGGGCGGGGTCCTAGCCCATGCTTTTAGCCCGTCGGATGGAAGATTCCACTACGACGCAGATGAGCCTTGGTCTGTGGGTGCTACACCAGGTGCTTATGACTTGGAGACTGTGGCTTTGCATGAAATTGGGCATCTTCTGGGACTTGGACATAGCTCAGTGGAGGGAGCTATCATGGCCCCAGCTATTCCCCCGGGAATGACTAAAAGTTTGCATGGGGACGATATTCAAGGAATCAGGGCTTTATACAACGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

308

Amino Acids

33.8

Weight (kDa)

6.61

Isoelectric Point (pI)

32.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PG_binding_1	PF01471	56 - 113	6e-10	Putative peptidoglycan binding domain
Peptidase_M10	PF00413	156 - 306	3.5e-46	Matrixin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001919)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06010
fragaria_vesca	FvH4_6g00460
malus_domestica	MD04G1245200.v1.1 MD09G1092600.v1.1 MD12G1086700.v1.1 MD17G1082700.v1.1
prunus_persica	Prupe.6G361800_v2.0.a1 Prupe.6G361800_v2.0.a1
pyrus_communis	pycom04g21590 pycom12g23890
rosa_chinensis	RchiOBHm_Chr2g0127151 RchiOBHm_Chr3g0447831
rosa_laevigata	RLG00000015762 RLG00000018977 RLG00000018978 RLG00000021317
rosa_multiflora	Rmu_sc0005601.1_g000003 Rmu_sc0021156.1_g000003 Rmu_sc0026966.1_g000003 Rmu_ssc0000018.1_g000076
rosa_roxburghii	Rroxscaffold_2G00154490 Rroxscaffold_6G00426040
rosa_rugosa	Rorug02G0277000 Rorug02G0277100 Rorug02G0277200 Rorug02G0494200 Rorug02G0606200 Rorug02G0606300 Rorug02G0606400
rosa_samantha	Rh2AG327600 Rh2AG327700 Rh2AG560300 Rh2BG337700 Rh2BG573600 Rh2CG314600 Rh2CG543900 Rh2DG354600 Rh2DG354800 Rh2DG583600 Rh3AG005600 Rh3BG005300 Rh3CG005500 Rh3DG005800
rosa_wichuraiana	Rw0G013430 Rw2G026580 Rw3G000420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	377, 408
AciI	CCGC	2 cut(s)	611, 675
AcsI	RAATTY	1 cut(s)	655
AcuI	CTGAAG	1 cut(s)	543
AdeI	CACNNNGTG	1 cut(s)	761
AfaI	GTAC	1 cut(s)	197
AfiI	CCNNNNNNNGG	5 cut(s)	259, 353, 405, 676, 707
AgsI	TTSAA	6 cut(s)	125, 191, 208, 423, 619, 899
AjnI	CCWGG	2 cut(s)	453, 757
AleI	CACNNNNGTG	1 cut(s)	147
AluBI	AGCT	4 cut(s)	102, 825, 839, 854
AluI	AGCT	4 cut(s)	102, 825, 839, 854
Alw21I	GWGCWC	1 cut(s)	104
Alw26I	GTCTC	2 cut(s)	642, 770
Ama87I	CYCGRG	2 cut(s)	670, 862
AoxI	GGCC	3 cut(s)	470, 667, 846
ApoI	RAATTY	1 cut(s)	655
ArsI	GACNNNNNNTTYG	4 cut(s)	769, 801, 862, 894
AspLEI	GCGC	1 cut(s)	536
AspS9I	GGNCC	3 cut(s)	668, 679, 847
AsuC2I	CCSGG	4 cut(s)	671, 672, 863, 864
AsuHPI	GGTGA	2 cut(s)	161, 650
AvaI	CYCGRG	2 cut(s)	670, 862
AvaII	GGWCC	1 cut(s)	679
BanI	GGYRCC	2 cut(s)	377, 408
BanII	GRGCYC	1 cut(s)	104
Bbv12I	GWGCWC	1 cut(s)	104
BccI	CCATC	4 cut(s)	275, 495, 526, 701
BceAI	ACGGC	2 cut(s)	334, 682
BciT130I	CCWGG	2 cut(s)	455, 759
BclI	TGATCA	1 cut(s)	640
BcnI	CCSGG	4 cut(s)	671, 672, 863, 864
BcoDI	GTCTC	2 cut(s)	642, 770
BfaI	CTAG	1 cut(s)	683
BfoI	RGCGCY	1 cut(s)	537
Bme1390I	CCNGG	6 cut(s)	455, 671, 672, 759, 863, 864
Bme18I	GGWCC	1 cut(s)	679
BmeT110I	CYCGRG	2 cut(s)	670, 862
BmgT120I	GGNCC	3 cut(s)	668, 679, 847
BmiI	GGNNCC	4 cut(s)	379, 410, 680, 849
BmrFI	CCNGG	6 cut(s)	455, 671, 672, 759, 863, 864
BmsI	GCATC	3 cut(s)	14, 174, 811
BpuEI	CTTGAG	2 cut(s)	116, 281
BpuMI	CCSGG	4 cut(s)	671, 672, 863, 864
BsaJI	CCNNGG	7 cut(s)	415, 454, 528, 670, 737, 861, 862
BsaWI	WCCGGW	1 cut(s)	305
Bsc4I	CCNNNNNNNGG	5 cut(s)	259, 353, 405, 676, 707
Bse1I	ACTGG	1 cut(s)	589
BseBI	CCWGG	2 cut(s)	455, 759
BseDI	CCNNGG	7 cut(s)	415, 454, 528, 670, 737, 861, 862
BseGI	GGATG	3 cut(s)	5, 85, 712
BseLI	CCNNNNNNNGG	5 cut(s)	259, 353, 405, 676, 707
BseMII	CTCAG	1 cut(s)	840
BseNI	ACTGG	1 cut(s)	589
BseRI	GAGGAG	1 cut(s)	53
BseYI	CCCAGC	2 cut(s)	509, 850
BshFI	GGCC	3 cut(s)	472, 669, 848
BshNI	GGYRCC	2 cut(s)	377, 408
BsiHKAI	GWGCWC	1 cut(s)	104
BsiHKCI	CYCGRG	2 cut(s)	670, 862
BsiSI	CCGG	4 cut(s)	306, 362, 671, 863
BslFI	GGGAC	3 cut(s)	577, 825, 902
BslI	CCNNNNNNNGG	5 cut(s)	259, 353, 405, 676, 707
BsmAI	GTCTC	2 cut(s)	642, 770
BsmBI	CGTCTC	1 cut(s)	642
BsmFI	GGGAC	3 cut(s)	577, 825, 902
BsmI	GAATGC	1 cut(s)	613
BsnI	GGCC	3 cut(s)	472, 669, 848
BsoBI	CYCGRG	2 cut(s)	670, 862
Bsp1286I	GDGCHC	1 cut(s)	104
Bsp143I	GATC	4 cut(s)	172, 282, 392, 640
Bsp19I	CCATGG	2 cut(s)	415, 528
BspACI	CCGC	2 cut(s)	611, 675
BspANI	GGCC	3 cut(s)	472, 669, 848
BspCNI	CTCAG	1 cut(s)	839
BspLI	GGNNCC	4 cut(s)	379, 410, 680, 849
BspQI	GCTCTTC	1 cut(s)	109
BspT107I	GGYRCC	2 cut(s)	377, 408
BsrI	ACTGG	1 cut(s)	589
BssECI	CCNNGG	7 cut(s)	415, 454, 528, 670, 737, 861, 862
BssMI	GATC	4 cut(s)	172, 282, 392, 640
BssT1I	CCWWGG	3 cut(s)	415, 528, 737
Bst2UI	CCWGG	2 cut(s)	455, 759
Bst4CI	ACNGT	5 cut(s)	200, 224, 328, 500, 781
Bst6I	CTCTTC	1 cut(s)	109
BstC8I	GCNNGC	2 cut(s)	48, 359
BstDEI	CTNAG	1 cut(s)	826
BstDSI	CCRYGG	2 cut(s)	415, 528
BstENI	CCTNNNNNAGG	1 cut(s)	257
BstF5I	GGATG	3 cut(s)	5, 85, 712
BstH2I	RGCGCY	1 cut(s)	537
BstHHI	GCGC	1 cut(s)	536
BstKTI	GATC	4 cut(s)	175, 285, 395, 643
BstMAI	GTCTC	2 cut(s)	642, 770
BstMBI	GATC	4 cut(s)	172, 282, 392, 640
BstMWI	GCNNNNNNNGC	3 cut(s)	533, 560, 845
BstNI	CCWGG	2 cut(s)	455, 759
BstNSI	RCATGY	1 cut(s)	361
BstSCI	CCNGG	6 cut(s)	453, 669, 670, 757, 861, 862
BsuRI	GGCC	3 cut(s)	472, 669, 848
BtgI	CCRYGG	2 cut(s)	415, 528
BtsCI	GGATG	3 cut(s)	5, 85, 712
BtsI	GCAGTG	1 cut(s)	432
BtsIMutI	CAGTG	3 cut(s)	333, 432, 834
Cac8I	GCNNGC	2 cut(s)	48, 359
CfoI	GCGC	1 cut(s)	536
Cfr13I	GGNCC	3 cut(s)	668, 679, 847
Cfr9I	CCCGGG	2 cut(s)	670, 862
CseI	GACGC	1 cut(s)	734
CsiI	ACCWGGT	1 cut(s)	757
Csp6I	GTAC	1 cut(s)	196
CviQI	GTAC	1 cut(s)	196
DdeI	CTNAG	1 cut(s)	826
DpnI	GATC	4 cut(s)	174, 284, 394, 642
DpnII	GATC	4 cut(s)	172, 282, 392, 640
DraIII	CACNNNGTG	1 cut(s)	761
Eam1104I	CTCTTC	1 cut(s)	109
EarI	CTCTTC	1 cut(s)	109
Ecl136II	GAGCTC	1 cut(s)	102
Eco130I	CCWWGG	3 cut(s)	415, 528, 737
Eco24I	GRGCYC	1 cut(s)	104
Eco32I	GATATC	1 cut(s)	367
Eco47I	GGWCC	1 cut(s)	679
Eco53kI	GAGCTC	1 cut(s)	102
Eco57I	CTGAAG	1 cut(s)	543
Eco88I	CYCGRG	2 cut(s)	670, 862
EcoICRI	GAGCTC	1 cut(s)	102
EcoNI	CCTNNNNNAGG	1 cut(s)	257
EcoO109I	RGGNCCY	1 cut(s)	679
EcoRI	GAATTC	1 cut(s)	655
EcoRII	CCWGG	2 cut(s)	453, 757
EcoRV	GATATC	1 cut(s)	367
EcoT14I	CCWWGG	3 cut(s)	415, 528, 737
EcoT38I	GRGCYC	1 cut(s)	104
ErhI	CCWWGG	3 cut(s)	415, 528, 737
Esp3I	CGTCTC	1 cut(s)	642
FaqI	GGGAC	3 cut(s)	577, 825, 902
FauI	CCCGC	1 cut(s)	668
FbaI	TGATCA	1 cut(s)	640
FokI	GGATG	2 cut(s)	72, 719
FriOI	GRGCYC	1 cut(s)	104
FspBI	CTAG	1 cut(s)	683
GlaI	GCGC	1 cut(s)	535
GsaI	CCCAGC	2 cut(s)	513, 854
HaeII	RGCGCY	1 cut(s)	537
HaeIII	GGCC	3 cut(s)	472, 669, 848
HapII	CCGG	4 cut(s)	306, 362, 671, 863
HgaI	GACGC	1 cut(s)	734
HhaI	GCGC	1 cut(s)	536
Hin6I	GCGC	1 cut(s)	534
HinP1I	GCGC	1 cut(s)	534
HinfI	GANTC	2 cut(s)	714, 903
HpaII	CCGG	4 cut(s)	306, 362, 671, 863
HphI	GGTGA	2 cut(s)	161, 650
Hpy166II	GTNNAC	1 cut(s)	303
Hpy188I	TCNGA	4 cut(s)	232, 523, 706, 926
Hpy188III	TCNNGA	1 cut(s)	271
Hpy8I	GTNNAC	1 cut(s)	303
Hpy99I	CGWCG	2 cut(s)	706, 728
HpyAV	CCTTC	2 cut(s)	62, 483
HpyCH4III	ACNGT	5 cut(s)	200, 224, 328, 500, 781
HpyCH4IV	ACGT	2 cut(s)	581, 921
HpyCH4V	TGCA	3 cut(s)	74, 790, 883
HpyF10VI	GCNNNNNNNGC	3 cut(s)	533, 560, 845
HpyF3I	CTNAG	1 cut(s)	826
HpySE526I	ACGT	2 cut(s)	581, 921
HspAI	GCGC	1 cut(s)	534
Ksp22I	TGATCA	1 cut(s)	640
Kzo9I	GATC	4 cut(s)	172, 282, 392, 640
LguI	GCTCTTC	1 cut(s)	109
LmnI	GCTCC	1 cut(s)	836
LweI	GCATC	3 cut(s)	14, 174, 811
MabI	ACCWGGT	1 cut(s)	757
MaeI	CTAG	1 cut(s)	683
MaeII	ACGT	2 cut(s)	581, 921
MaeIII	GTNAC	2 cut(s)	200, 599
MalI	GATC	4 cut(s)	174, 284, 394, 642
MboI	GATC	4 cut(s)	172, 282, 392, 640
MboII	GAAGA	6 cut(s)	96, 346, 468, 631, 723, 797
MhlI	GDGCHC	1 cut(s)	104
MluCI	AATT	4 cut(s)	286, 423, 655, 795
MmeI	TCCRAC	1 cut(s)	684
MnlI	CCTC	6 cut(s)	74, 253, 305, 357, 391, 826
MslI	CAYNNNNRTG	3 cut(s)	147, 414, 636
MspI	CCGG	4 cut(s)	306, 362, 671, 863
MspR9I	CCNGG	6 cut(s)	455, 671, 672, 759, 863, 864
Mva1269I	GAATGC	1 cut(s)	613
MvaI	CCWGG	2 cut(s)	455, 759
MwoI	GCNNNNNNNGC	3 cut(s)	533, 560, 845
NciI	CCSGG	4 cut(s)	671, 672, 863, 864
NcoI	CCATGG	2 cut(s)	415, 528
NdeII	GATC	4 cut(s)	172, 282, 392, 640
NlaIV	GGNNCC	4 cut(s)	379, 410, 680, 849
NspI	RCATGY	1 cut(s)	361
OliI	CACNNNNGTG	1 cut(s)	147
PaeI	GCATGC	1 cut(s)	361
PciSI	GCTCTTC	1 cut(s)	109
PctI	GAATGC	1 cut(s)	613
PfeI	GAWTC	2 cut(s)	714, 903
PpuMI	RGGWCCY	1 cut(s)	679
Psp124BI	GAGCTC	1 cut(s)	104
Psp5II	RGGWCCY	1 cut(s)	679
Psp6I	CCWGG	2 cut(s)	453, 757
PspFI	CCCAGC	2 cut(s)	509, 850
PspGI	CCWGG	2 cut(s)	453, 757
PspN4I	GGNNCC	4 cut(s)	379, 410, 680, 849
PspPI	GGNCC	3 cut(s)	668, 679, 847
PspPPI	RGGWCCY	1 cut(s)	679
RsaI	GTAC	1 cut(s)	197
RsaNI	GTAC	1 cut(s)	196
RseI	CAYNNNNRTG	3 cut(s)	147, 414, 636
SacI	GAGCTC	1 cut(s)	104
SapI	GCTCTTC	1 cut(s)	109
Sau3AI	GATC	4 cut(s)	172, 282, 392, 640
Sau96I	GGNCC	3 cut(s)	668, 679, 847
ScrFI	CCNGG	6 cut(s)	455, 671, 672, 759, 863, 864
SduI	GDGCHC	1 cut(s)	104
SexAI	ACCWGGT	1 cut(s)	757
SfaNI	GCATC	3 cut(s)	14, 174, 811
SinI	GGWCC	1 cut(s)	679
SmaI	CCCGGG	2 cut(s)	672, 864
SmiMI	CAYNNNNRTG	3 cut(s)	147, 414, 636
SmlI	CTYRAG	2 cut(s)	131, 296
SmoI	CTYRAG	2 cut(s)	131, 296
SphI	GCATGC	1 cut(s)	361
SrfI	GCCCGGGC	1 cut(s)	672
Sse9I	AATT	4 cut(s)	286, 423, 655, 795
SsiI	CCGC	2 cut(s)	611, 675
SspMI	CTAG	1 cut(s)	683
SstI	GAGCTC	1 cut(s)	104
StyD4I	CCNGG	6 cut(s)	453, 669, 670, 757, 861, 862
StyI	CCWWGG	3 cut(s)	415, 528, 737
TaaI	ACNGT	5 cut(s)	200, 224, 328, 500, 781
TaiI	ACGT	2 cut(s)	584, 924
TaqI	TCGA	1 cut(s)	332
TasI	AATT	4 cut(s)	286, 423, 655, 795
TfiI	GAWTC	2 cut(s)	714, 903
TscAI	CASTG	3 cut(s)	333, 439, 834
TspDTI	ATGAA	4 cut(s)	416, 620, 648, 807
TspMI	CCCGGG	2 cut(s)	670, 862
TspRI	CASTG	3 cut(s)	333, 439, 834
VpaK11BI	GGWCC	1 cut(s)	679
XagI	CCTNNNNNAGG	1 cut(s)	257
XapI	RAATTY	1 cut(s)	655
XceI	RCATGY	1 cut(s)	361
XmaI	CCCGGG	2 cut(s)	670, 862
XspI	CTAG	1 cut(s)	683

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.