Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0001919

Physical Location & Seq

Genomic Coordinates Reverse (-)

47068147 .. 47068793

Gene Structure 647 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG327700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGAACTGGCCCAAGCCAATTTTGAGCTCGAATCTTCCCATTCCGGACCGAAGCCAAAGCCCAAGCGAGTTTTTTGTGTGTCTGGTAAGCGGCAACAAACACTGGAGAAGCGAAAGCAGGAGCAGGAATGTGGAGAGACAAGCCCCCCGGTTTGAAGATTCTGTGGGTCTGGACCCTCGGCACCGCCGCTGGTACTGTATTAACTCTACTCTAACCTCCGTCTCTTCTACACTCATATTTCATATCCTAATGAGGTGTCTGGTGTTGTTAGTTTTGGTTGCCAATGTGGTCAGGACCAGGGTGAGAGACATGGACAACCTTATGAACAACACTGAGGAGCATCATCAACAACAACAACAACAGGCGGCCGCCGCCGACACGGAGACACTTTTGTTGCCTGAATCCGATCAAGTGATTCGGGAAGAGAAATCCTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

145

Amino Acids

16.77

Weight (kDa)

6.96

Isoelectric Point (pI)

74.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001919)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06010
fragaria_vesca	FvH4_6g00460
malus_domestica	MD04G1245200.v1.1 MD09G1092600.v1.1 MD12G1086700.v1.1 MD17G1082700.v1.1
prunus_persica	Prupe.6G361800_v2.0.a1 Prupe.6G361800_v2.0.a1
pyrus_communis	pycom04g21590 pycom12g23890
rosa_chinensis	RchiOBHm_Chr2g0127151 RchiOBHm_Chr3g0447831
rosa_laevigata	RLG00000015762 RLG00000018977 RLG00000018978 RLG00000021317
rosa_multiflora	Rmu_sc0005601.1_g000003 Rmu_sc0021156.1_g000003 Rmu_sc0026966.1_g000003 Rmu_ssc0000018.1_g000076
rosa_roxburghii	Rroxscaffold_2G00154490 Rroxscaffold_6G00426040
rosa_rugosa	Rorug02G0277000 Rorug02G0277100 Rorug02G0277200 Rorug02G0494200 Rorug02G0606200 Rorug02G0606300 Rorug02G0606400
rosa_samantha	Rh2AG327600 Rh2AG327700 Rh2AG560300 Rh2BG337700 Rh2BG573600 Rh2CG314600 Rh2CG543900 Rh2DG354600 Rh2DG354800 Rh2DG583600 Rh3AG005600 Rh3BG005300 Rh3CG005500 Rh3DG005800
rosa_wichuraiana	Rw0G013430 Rw2G026580 Rw3G000420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	180
AccIII	TCCGGA	1 cut(s)	43
AciI	CCGC	6 cut(s)	90, 184, 187, 365, 369, 372
AcoI	YGGCCR	1 cut(s)	366
AfaI	GTAC	1 cut(s)	194
AgsI	TTSAA	1 cut(s)	155
AjnI	CCWGG	1 cut(s)	296
AluBI	AGCT	1 cut(s)	27
AluI	AGCT	1 cut(s)	27
Alw21I	GWGCWC	1 cut(s)	29
Alw26I	GTCTC	4 cut(s)	130, 226, 300, 377
Aor13HI	TCCGGA	1 cut(s)	43
AoxI	GGCC	2 cut(s)	8, 366
AspS9I	GGNCC	4 cut(s)	9, 46, 172, 294
AsuC2I	CCSGG	1 cut(s)	148
AsuHPI	GGTGA	1 cut(s)	313
AvaII	GGWCC	3 cut(s)	46, 172, 294
BanI	GGYRCC	1 cut(s)	180
BanII	GRGCYC	1 cut(s)	29
Bbv12I	GWGCWC	1 cut(s)	29
BciT130I	CCWGG	1 cut(s)	298
BcnI	CCSGG	1 cut(s)	148
BcoDI	GTCTC	4 cut(s)	130, 226, 300, 377
BisI	GCNGC	5 cut(s)	91, 187, 366, 369, 372
BlsI	GCNGC	5 cut(s)	92, 188, 367, 370, 373
Bme1390I	CCNGG	2 cut(s)	148, 298
Bme18I	GGWCC	3 cut(s)	46, 172, 294
BmgT120I	GGNCC	4 cut(s)	9, 46, 172, 294
BmiI	GGNNCC	2 cut(s)	174, 182
BmrFI	CCNGG	2 cut(s)	148, 298
BmsI	GCATC	1 cut(s)	349
BplI	GAGNNNNNCTC	1 cut(s)	416
BpmI	CTGGAG	1 cut(s)	124
BpuMI	CCSGG	1 cut(s)	148
BsaJI	CCNNGG	3 cut(s)	146, 176, 297
BsaWI	WCCGGW	1 cut(s)	43
Bse1I	ACTGG	2 cut(s)	11, 107
BseAI	TCCGGA	1 cut(s)	43
BseBI	CCWGG	1 cut(s)	298
BseDI	CCNNGG	3 cut(s)	146, 176, 297
BseMII	CTCAG	1 cut(s)	324
BseNI	ACTGG	2 cut(s)	11, 107
BseRI	GAGGAG	1 cut(s)	350
BseX3I	CGGCCG	1 cut(s)	366
Bsh1285I	CGRYCG	1 cut(s)	369
BshFI	GGCC	2 cut(s)	10, 368
BshNI	GGYRCC	1 cut(s)	180
BsiEI	CGRYCG	1 cut(s)	369
BsiHKAI	GWGCWC	1 cut(s)	29
BsiSI	CCGG	2 cut(s)	44, 148
BsmAI	GTCTC	4 cut(s)	130, 226, 300, 377
BsmBI	CGTCTC	1 cut(s)	226
BsnI	GGCC	2 cut(s)	10, 368
Bsp1286I	GDGCHC	1 cut(s)	29
Bsp13I	TCCGGA	1 cut(s)	43
Bsp143I	GATC	1 cut(s)	406
BspACI	CCGC	6 cut(s)	90, 184, 187, 365, 369, 372
BspANI	GGCC	2 cut(s)	10, 368
BspCNI	CTCAG	1 cut(s)	325
BspEI	TCCGGA	1 cut(s)	43
BspLI	GGNNCC	2 cut(s)	174, 182
BspT107I	GGYRCC	1 cut(s)	180
BsrI	ACTGG	2 cut(s)	11, 107
BssECI	CCNNGG	3 cut(s)	146, 176, 297
BssMI	GATC	1 cut(s)	406
Bst2UI	CCWGG	1 cut(s)	298
Bst4CI	ACNGT	1 cut(s)	197
Bst6I	CTCTTC	2 cut(s)	229, 417
BstDEI	CTNAG	2 cut(s)	333, 435
BstKTI	GATC	1 cut(s)	409
BstMAI	GTCTC	4 cut(s)	130, 226, 300, 377
BstMBI	GATC	1 cut(s)	406
BstMCI	CGRYCG	1 cut(s)	369
BstMWI	GCNNNNNNNGC	1 cut(s)	371
BstNI	CCWGG	1 cut(s)	298
BstSCI	CCNGG	2 cut(s)	146, 296
BstZI	CGGCCG	1 cut(s)	366
BsuRI	GGCC	2 cut(s)	10, 368
BtsIMutI	CAGTG	2 cut(s)	100, 330
CciNI	GCGGCCGC	1 cut(s)	366
Cfr13I	GGNCC	4 cut(s)	9, 46, 172, 294
CpoI	CGGWCCG	1 cut(s)	46
Csp6I	GTAC	1 cut(s)	193
CspI	CGGWCCG	1 cut(s)	46
CviAII	CATG	1 cut(s)	310
CviJI	RGCY	7 cut(s)	10, 16, 27, 54, 60, 143, 368
CviKI_1	RGCY	7 cut(s)	10, 16, 27, 54, 60, 143, 368
CviQI	GTAC	1 cut(s)	193
DdeI	CTNAG	2 cut(s)	333, 435
DpnI	GATC	1 cut(s)	408
DpnII	GATC	1 cut(s)	406
EaeI	YGGCCR	1 cut(s)	366
EagI	CGGCCG	1 cut(s)	366
Eam1104I	CTCTTC	2 cut(s)	229, 417
EarI	CTCTTC	2 cut(s)	229, 417
Ecl136II	GAGCTC	1 cut(s)	27
EclXI	CGGCCG	1 cut(s)	366
Eco24I	GRGCYC	1 cut(s)	29
Eco47I	GGWCC	3 cut(s)	46, 172, 294
Eco52I	CGGCCG	1 cut(s)	366
Eco53kI	GAGCTC	1 cut(s)	27
EcoICRI	GAGCTC	1 cut(s)	27
EcoRII	CCWGG	1 cut(s)	296
EcoT38I	GRGCYC	1 cut(s)	29
Esp3I	CGTCTC	1 cut(s)	226
FaeI	CATG	1 cut(s)	313
FaiI	YATR	4 cut(s)	236, 243, 311, 323
FatI	CATG	1 cut(s)	309
Fnu4HI	GCNGC	5 cut(s)	91, 187, 366, 369, 372
FriOI	GRGCYC	1 cut(s)	29
Fsp4HI	GCNGC	5 cut(s)	91, 187, 366, 369, 372
GluI	GCNGC	5 cut(s)	91, 187, 366, 369, 372
GsuI	CTGGAG	1 cut(s)	124
HaeIII	GGCC	2 cut(s)	10, 368
HapII	CCGG	2 cut(s)	44, 148
Hin1II	CATG	1 cut(s)	313
HinfI	GANTC	4 cut(s)	31, 158, 401, 415
HpaII	CCGG	2 cut(s)	44, 148
HphI	GGTGA	1 cut(s)	313
Hpy188I	TCNGA	1 cut(s)	406
Hpy188III	TCNNGA	4 cut(s)	44, 170, 292, 419
HpyCH4III	ACNGT	1 cut(s)	197
HpyF10VI	GCNNNNNNNGC	1 cut(s)	371
HpyF3I	CTNAG	2 cut(s)	333, 435
Hsp92II	CATG	1 cut(s)	313
Kpn2I	TCCGGA	1 cut(s)	43
Kzo9I	GATC	1 cut(s)	406
LmnI	GCTCC	2 cut(s)	120, 337
LweI	GCATC	1 cut(s)	349
MalI	GATC	1 cut(s)	408
MboI	GATC	1 cut(s)	406
MboII	GAAGA	4 cut(s)	26, 167, 216, 434
MhlI	GDGCHC	1 cut(s)	29
MluCI	AATT	1 cut(s)	18
MnlI	CCTC	4 cut(s)	186, 226, 246, 328
MroI	TCCGGA	1 cut(s)	43
MseI	TTAA	1 cut(s)	201
MspA1I	CMGCKG	1 cut(s)	189
MspI	CCGG	2 cut(s)	44, 148
MspR9I	CCNGG	2 cut(s)	148, 298
MvaI	CCWGG	1 cut(s)	298
MwoI	GCNNNNNNNGC	1 cut(s)	371
NciI	CCSGG	1 cut(s)	148
NdeII	GATC	1 cut(s)	406
NlaIII	CATG	1 cut(s)	313
NlaIV	GGNNCC	2 cut(s)	174, 182
NmeAIII	GCCGAG	1 cut(s)	157
NotI	GCGGCCGC	1 cut(s)	366
PfeI	GAWTC	4 cut(s)	31, 158, 401, 415
PkrI	GCNGC	5 cut(s)	92, 188, 367, 370, 373
Psp124BI	GAGCTC	1 cut(s)	29
Psp6I	CCWGG	1 cut(s)	296
PspGI	CCWGG	1 cut(s)	296
PspN4I	GGNNCC	2 cut(s)	174, 182
PspPI	GGNCC	4 cut(s)	9, 46, 172, 294
RsaI	GTAC	1 cut(s)	194
RsaNI	GTAC	1 cut(s)	193
Rsr2I	CGGWCCG	1 cut(s)	46
RsrII	CGGWCCG	1 cut(s)	46
SacI	GAGCTC	1 cut(s)	29
SaqAI	TTAA	1 cut(s)	201
SatI	GCNGC	5 cut(s)	91, 187, 366, 369, 372
Sau3AI	GATC	1 cut(s)	406
Sau96I	GGNCC	4 cut(s)	9, 46, 172, 294
ScrFI	CCNGG	2 cut(s)	148, 298
SduI	GDGCHC	1 cut(s)	29
SetI	ASST	4 cut(s)	29, 218, 257, 321
SfaNI	GCATC	1 cut(s)	349
SinI	GGWCC	3 cut(s)	46, 172, 294
Sse9I	AATT	1 cut(s)	18
SsiI	CCGC	6 cut(s)	90, 184, 187, 365, 369, 372
SstI	GAGCTC	1 cut(s)	29
StyD4I	CCNGG	2 cut(s)	146, 296
TaaI	ACNGT	1 cut(s)	197
TaqI	TCGA	1 cut(s)	29
TaqII	GACCGA	1 cut(s)	63
TasI	AATT	1 cut(s)	18
TauI	GCSGC	5 cut(s)	93, 189, 368, 371, 374
TfiI	GAWTC	4 cut(s)	31, 158, 401, 415
Tru1I	TTAA	1 cut(s)	201
Tru9I	TTAA	1 cut(s)	201
TscAI	CASTG	2 cut(s)	107, 337
TspDTI	ATGAA	3 cut(s)	17, 230, 338
TspGWI	ACGGA	2 cut(s)	208, 395
TspRI	CASTG	2 cut(s)	107, 337
VpaK11BI	GGWCC	3 cut(s)	46, 172, 294

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.