Rh2CG314600

Formiminotransferase domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0001919
Physical Location & Seq
Reverse (-)
39807666 .. 39808085
420 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG314600.1

Sequence Viewer

Length: 420 bp
ATGGACGACATGTTCGGAGAGTCTCTGAACTTCGAAGAGATCCACATCAAGCAAGGCTTCGACGAAGGCCACAAAGACGGCCTGATCGCCGGAAAAGAGGAGGCCAGGCAAGTGGGCCTCAAGGTGGGCTTCGAGGTCGGCGAGGAGCTAGGGTTCTACAAGGGTTGTGTGGAGGTATGGAACTCTGCGGTCCGGGTCGACCCAACCCGGTTCTCGACCCGGGTCCAGAAGGTCGTTAAGCAGATGGAGGAGTTGGTGGAGAGGTACCCAGTTATGGAACCCGAGAATGAGAGCGTGCAGGAGATAGTGGAGGATTTGAGGTTGAAGTTTAAGGCGGTTTGTGCTTCTTTGGGTGTGAAATTGGAGTACAAAGGGTACCTGAGAGCTTCATCTTCTGGGGCTAAAGACGTTGCGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FTCD_N Yae1_N

Protein Analysis

139

Amino Acids

15.68

Weight (kDa)

4.97

Isoelectric Point (pI)

37.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Yae1_N PF09811 19 - 57 1.6e-08 Essential protein Yae1, N terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 264, 375
AccB1I GGYRCC 2 cut(s) 264, 375
AccI GTMKAC 1 cut(s) 198
AciI CCGC 2 cut(s) 188, 335
AclWI GGATC 1 cut(s) 34
AfaI GTAC 3 cut(s) 266, 368, 377
AfiI CCNNNNNNNGG 2 cut(s) 124, 274
AflIII ACRYGT 1 cut(s) 9
AgsI TTSAA 1 cut(s) 325
AjnI CCWGG 1 cut(s) 104
AloI GAACNNNNNNTCC 3 cut(s) 28, 137, 169
AluBI AGCT 2 cut(s) 148, 386
AluI AGCT 2 cut(s) 148, 386
Alw26I GTCTC 1 cut(s) 27
AlwI GGATC 1 cut(s) 34
Ama87I CYCGRG 2 cut(s) 219, 281
AoxI GGCC 4 cut(s) 67, 79, 102, 115
ArsI GACNNNNNNTTYG 1 cut(s) 28
Asp718I GGTACC 2 cut(s) 264, 375
AspS9I GGNCC 3 cut(s) 115, 190, 223
AsuC2I CCSGG 4 cut(s) 194, 208, 220, 221
AsuII TTCGAA 1 cut(s) 33
AvaI CYCGRG 2 cut(s) 219, 281
AvaII GGWCC 2 cut(s) 190, 223
BanI GGYRCC 2 cut(s) 264, 375
BccI CCATC 1 cut(s) 238
BceAI ACGGC 1 cut(s) 94
BciT130I CCWGG 1 cut(s) 106
BcnI CCSGG 4 cut(s) 194, 208, 220, 221
BcoDI GTCTC 1 cut(s) 27
BfaI CTAG 1 cut(s) 149
Bme1390I CCNGG 5 cut(s) 106, 194, 208, 220, 221
Bme18I GGWCC 2 cut(s) 190, 223
BmeT110I CYCGRG 2 cut(s) 219, 281
BmgT120I GGNCC 3 cut(s) 115, 190, 223
BmiI GGNNCC 4 cut(s) 224, 266, 279, 377
BmrFI CCNGG 5 cut(s) 106, 194, 208, 220, 221
BmrI ACTGGG 1 cut(s) 263
BmuI ACTGGG 1 cut(s) 263
BoxI GACNNNNGTC 1 cut(s) 221
Bpu14I TTCGAA 1 cut(s) 33
BpuEI CTTGAG 1 cut(s) 104
BpuMI CCSGG 4 cut(s) 194, 208, 220, 221
BsaBI GATNNNNATC 1 cut(s) 44
BsaJI CCNNGG 1 cut(s) 219
BsaXI ACNNNNNCTCC 2 cut(s) 137, 167
Bsc4I CCNNNNNNNGG 2 cut(s) 124, 274
Bse1I ACTGG 1 cut(s) 269
Bse8I GATNNNNATC 1 cut(s) 44
BseBI CCWGG 1 cut(s) 106
BseDI CCNNGG 1 cut(s) 219
BseJI GATNNNNATC 1 cut(s) 44
BseLI CCNNNNNNNGG 2 cut(s) 124, 274
BseMII CTCAG 1 cut(s) 371
BseNI ACTGG 1 cut(s) 269
BseRI GAGGAG 3 cut(s) 113, 158, 263
BsgI GTGCAG 1 cut(s) 317
BshFI GGCC 4 cut(s) 69, 81, 104, 117
BshNI GGYRCC 2 cut(s) 264, 375
BsiHKCI CYCGRG 2 cut(s) 219, 281
BsiSI CCGG 4 cut(s) 90, 193, 208, 220
BslI CCNNNNNNNGG 2 cut(s) 124, 274
BsmAI GTCTC 1 cut(s) 27
BsnI GGCC 4 cut(s) 69, 81, 104, 117
BsoBI CYCGRG 2 cut(s) 219, 281
Bsp119I TTCGAA 1 cut(s) 33
Bsp143I GATC 2 cut(s) 39, 84
BspACI CCGC 2 cut(s) 188, 335
BspANI GGCC 4 cut(s) 69, 81, 104, 117
BspCNI CTCAG 1 cut(s) 372
BspLI GGNNCC 4 cut(s) 224, 266, 279, 377
BspPI GGATC 1 cut(s) 34
BspT104I TTCGAA 1 cut(s) 33
BspT107I GGYRCC 2 cut(s) 264, 375
BsrI ACTGG 1 cut(s) 269
BssECI CCNNGG 1 cut(s) 219
BssMI GATC 2 cut(s) 39, 84
Bst2UI CCWGG 1 cut(s) 106
Bst6I CTCTTC 1 cut(s) 30
BstBI TTCGAA 1 cut(s) 33
BstC8I GCNNGC 1 cut(s) 296
BstDEI CTNAG 1 cut(s) 380
BstKTI GATC 2 cut(s) 42, 87
BstMAI GTCTC 1 cut(s) 27
BstMBI GATC 2 cut(s) 39, 84
BstMWI GCNNNNNNNGC 1 cut(s) 341
BstNI CCWGG 1 cut(s) 106
BstNSI RCATGY 1 cut(s) 13
BstPAI GACNNNNGTC 1 cut(s) 221
BstSCI CCNGG 5 cut(s) 104, 192, 206, 218, 219
BstX2I RGATCY 1 cut(s) 39
BstXI CCANNNNNNTGG 1 cut(s) 112
BstYI RGATCY 1 cut(s) 39
BsuRI GGCC 4 cut(s) 69, 81, 104, 117
Cac8I GCNNGC 1 cut(s) 296
Cfr13I GGNCC 3 cut(s) 115, 190, 223
Cfr9I CCCGGG 1 cut(s) 219
CpoI CGGWCCG 1 cut(s) 190
Csp6I GTAC 3 cut(s) 265, 367, 376
CspI CGGWCCG 1 cut(s) 190
CviAII CATG 1 cut(s) 10
CviJI RGCY 9 cut(s) 57, 69, 81, 104, 117, 129, 148, 386, 401
CviKI_1 RGCY 9 cut(s) 57, 69, 81, 104, 117, 129, 148, 386, 401
CviQI GTAC 3 cut(s) 265, 367, 376
DdeI CTNAG 1 cut(s) 380
DpnI GATC 2 cut(s) 41, 86
DpnII GATC 2 cut(s) 39, 84
Eam1104I CTCTTC 1 cut(s) 30
EarI CTCTTC 1 cut(s) 30
Eco47I GGWCC 2 cut(s) 190, 223
Eco88I CYCGRG 2 cut(s) 219, 281
EcoRII CCWGG 1 cut(s) 104
FaeI CATG 1 cut(s) 13
FaiI YATR 3 cut(s) 11, 178, 275
FalI AAGNNNNNCTT 4 cut(s) 41, 73, 113, 145
FatI CATG 1 cut(s) 9
FblI GTMKAC 1 cut(s) 198
FspBI CTAG 1 cut(s) 149
HaeIII GGCC 4 cut(s) 69, 81, 104, 117
HapII CCGG 4 cut(s) 90, 193, 208, 220
Hin1II CATG 1 cut(s) 13
HincII GTYRAC 1 cut(s) 199
HindII GTYRAC 1 cut(s) 199
HinfI GANTC 1 cut(s) 20
HpaII CCGG 4 cut(s) 90, 193, 208, 220
Hpy166II GTNNAC 1 cut(s) 199
Hpy188I TCNGA 2 cut(s) 17, 27
Hpy188III TCNNGA 2 cut(s) 214, 226
Hpy8I GTNNAC 1 cut(s) 199
Hpy99I CGWCG 1 cut(s) 65
HpyAV CCTTC 2 cut(s) 59, 223
HpyCH4IV ACGT 1 cut(s) 408
HpyCH4V TGCA 1 cut(s) 298
HpyF10VI GCNNNNNNNGC 1 cut(s) 341
HpyF3I CTNAG 1 cut(s) 380
HpySE526I ACGT 1 cut(s) 408
Hsp92II CATG 1 cut(s) 13
KpnI GGTACC 2 cut(s) 268, 379
Kzo9I GATC 2 cut(s) 39, 84
LmnI GCTCC 1 cut(s) 145
MaeI CTAG 1 cut(s) 149
MaeII ACGT 1 cut(s) 408
MalI GATC 2 cut(s) 41, 86
MboI GATC 2 cut(s) 39, 84
MboII GAAGA 2 cut(s) 47, 384
MflI RGATCY 1 cut(s) 39
MluCI AATT 1 cut(s) 359
MlyI GAGTC 1 cut(s) 29
MseI TTAA 2 cut(s) 237, 330
MspI CCGG 4 cut(s) 90, 193, 208, 220
MspR9I CCNGG 5 cut(s) 106, 194, 208, 220, 221
MvaI CCWGG 1 cut(s) 106
MwoI GCNNNNNNNGC 1 cut(s) 341
NciI CCSGG 4 cut(s) 194, 208, 220, 221
NdeII GATC 2 cut(s) 39, 84
NlaIII CATG 1 cut(s) 13
NlaIV GGNNCC 4 cut(s) 224, 266, 279, 377
NspI RCATGY 1 cut(s) 13
NspV TTCGAA 1 cut(s) 33
PciI ACATGT 1 cut(s) 9
PcsI WCGNNNNNNNCGW 1 cut(s) 138
PleI GAGTC 1 cut(s) 28
PpsI GAGTC 1 cut(s) 28
PscI ACATGT 1 cut(s) 9
PshAI GACNNNNGTC 1 cut(s) 221
Psp6I CCWGG 1 cut(s) 104
PspGI CCWGG 1 cut(s) 104
PspN4I GGNNCC 4 cut(s) 224, 266, 279, 377
PspPI GGNCC 3 cut(s) 115, 190, 223
PsuI RGATCY 1 cut(s) 39
RsaI GTAC 3 cut(s) 266, 368, 377
RsaNI GTAC 3 cut(s) 265, 367, 376
Rsr2I CGGWCCG 1 cut(s) 190
RsrII CGGWCCG 1 cut(s) 190
SalI GTCGAC 1 cut(s) 197
SaqAI TTAA 2 cut(s) 237, 330
Sau3AI GATC 2 cut(s) 39, 84
Sau96I GGNCC 3 cut(s) 115, 190, 223
SchI GAGTC 1 cut(s) 29
ScrFI CCNGG 5 cut(s) 106, 194, 208, 220, 221
SfuI TTCGAA 1 cut(s) 33
SinI GGWCC 2 cut(s) 190, 223
SmaI CCCGGG 1 cut(s) 221
SmlI CTYRAG 1 cut(s) 119
SmoI CTYRAG 1 cut(s) 119
Sse9I AATT 1 cut(s) 359
SsiI CCGC 2 cut(s) 188, 335
SspMI CTAG 1 cut(s) 149
StyD4I CCNGG 5 cut(s) 104, 192, 206, 218, 219
TaiI ACGT 1 cut(s) 411
TaqI TCGA 5 cut(s) 33, 60, 132, 198, 215
TasI AATT 1 cut(s) 359
TatI WGTACW 1 cut(s) 366
Tru1I TTAA 2 cut(s) 237, 330
Tru9I TTAA 2 cut(s) 237, 330
TspDTI ATGAA 1 cut(s) 378
TspMI CCCGGG 1 cut(s) 219
VpaK11BI GGWCC 2 cut(s) 190, 223
XceI RCATGY 1 cut(s) 13
XmaI CCCGGG 1 cut(s) 219
XmiI GTMKAC 1 cut(s) 198
XspI CTAG 1 cut(s) 149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.