Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001919

Physical Location & Seq

Genomic Coordinates Reverse (-)

43935590 .. 43936906

Gene Structure 1317 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018978

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGGACCCTCTTTCTTTACGTGTAAAGGTAGAAATTCGATCTACGACCATCCGGTGTGTACTTGGCAATAGGTCATACTTTTCATCAGTGGGTCTCGATATTGGAAGATTCAACAAACACTGGAGAAGTGAAAGCAGGAGCAGGAATGTCGAGAGACAAGCCCCCCGGTTTGAAGATTCTGTAGGTCTAGACCCTCGGCACCGCCACTGGACCAAGGTGAGAGACGTGGACACCGTTATGAACAACACTGAGGAGTATCATCAACAACAACAGGCGGCTGCAGTCGACAAGGAGACACTTTTGTTGCCTGAATCCGATCAAGTGATTCGGGAAGAGAAATCCTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

116

Amino Acids

13.45

Weight (kDa)

7.95

Isoelectric Point (pI)

56.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001919)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06010
fragaria_vesca	FvH4_6g00460
malus_domestica	MD04G1245200.v1.1 MD09G1092600.v1.1 MD12G1086700.v1.1 MD17G1082700.v1.1
prunus_persica	Prupe.6G361800_v2.0.a1 Prupe.6G361800_v2.0.a1
pyrus_communis	pycom04g21590 pycom12g23890
rosa_chinensis	RchiOBHm_Chr2g0127151 RchiOBHm_Chr3g0447831
rosa_laevigata	RLG00000015762 RLG00000018977 RLG00000018978 RLG00000021317
rosa_multiflora	Rmu_sc0005601.1_g000003 Rmu_sc0021156.1_g000003 Rmu_sc0026966.1_g000003 Rmu_ssc0000018.1_g000076
rosa_roxburghii	Rroxscaffold_2G00154490 Rroxscaffold_6G00426040
rosa_rugosa	Rorug02G0277000 Rorug02G0277100 Rorug02G0277200 Rorug02G0494200 Rorug02G0606200 Rorug02G0606300 Rorug02G0606400
rosa_samantha	Rh2AG327600 Rh2AG327700 Rh2AG560300 Rh2BG337700 Rh2BG573600 Rh2CG314600 Rh2CG543900 Rh2DG354600 Rh2DG354800 Rh2DG583600 Rh3AG005600 Rh3BG005300 Rh3CG005500 Rh3DG005800
rosa_wichuraiana	Rw0G013430 Rw2G026580 Rw3G000420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	198
AccI	GTMKAC	1 cut(s)	285
AciI	CCGC	2 cut(s)	202, 275
AcsI	RAATTY	1 cut(s)	33
AfaI	GTAC	1 cut(s)	60
AflIII	ACRYGT	1 cut(s)	19
AgsI	TTSAA	2 cut(s)	112, 173
AjiI	CACGTC	1 cut(s)	226
Alw26I	GTCTC	4 cut(s)	98, 148, 216, 287
ApeKI	GCWGC	1 cut(s)	278
ApoI	RAATTY	1 cut(s)	33
AspS9I	GGNCC	2 cut(s)	4, 210
AsuC2I	CCSGG	1 cut(s)	166
AsuHPI	GGTGA	1 cut(s)	229
AvaII	GGWCC	2 cut(s)	4, 210
BanI	GGYRCC	1 cut(s)	198
BbvI	GCAGC	1 cut(s)	265
BccI	CCATC	1 cut(s)	56
BcgI	CGANNNNNNTGC	2 cut(s)	130, 164
BcnI	CCSGG	1 cut(s)	166
BcoDI	GTCTC	4 cut(s)	98, 148, 216, 287
BfaI	CTAG	1 cut(s)	188
BfmI	CTRYAG	2 cut(s)	180, 279
BisI	GCNGC	2 cut(s)	276, 279
BlsI	GCNGC	2 cut(s)	277, 280
Bme1390I	CCNGG	1 cut(s)	166
Bme18I	GGWCC	2 cut(s)	4, 210
BmgBI	CACGTC	1 cut(s)	226
BmgT120I	GGNCC	2 cut(s)	4, 210
BmiI	GGNNCC	2 cut(s)	6, 200
BmrFI	CCNGG	1 cut(s)	166
BplI	GAGNNNNNCTC	1 cut(s)	326
BpmI	CTGGAG	1 cut(s)	142
BpuMI	CCSGG	1 cut(s)	166
BsaAI	YACGTR	1 cut(s)	20
BsaI	GGTCTC	1 cut(s)	98
BsaJI	CCNNGG	3 cut(s)	164, 194, 213
BsaWI	WCCGGW	1 cut(s)	51
Bse1I	ACTGG	2 cut(s)	125, 212
BseDI	CCNNGG	3 cut(s)	164, 194, 213
BseGI	GGATG	1 cut(s)	48
BseMII	CTCAG	1 cut(s)	240
BseNI	ACTGG	2 cut(s)	125, 212
BseRI	GAGGAG	1 cut(s)	266
BseXI	GCAGC	1 cut(s)	265
BshNI	GGYRCC	1 cut(s)	198
BsiSI	CCGG	2 cut(s)	52, 166
BsmAI	GTCTC	4 cut(s)	98, 148, 216, 287
BsmBI	CGTCTC	1 cut(s)	216
Bso31I	GGTCTC	1 cut(s)	98
Bsp143I	GATC	2 cut(s)	38, 316
BspACI	CCGC	2 cut(s)	202, 275
BspCNI	CTCAG	1 cut(s)	241
BspLI	GGNNCC	2 cut(s)	6, 200
BspMAI	CTGCAG	1 cut(s)	283
BspT107I	GGYRCC	1 cut(s)	198
BspTNI	GGTCTC	1 cut(s)	98
BsrI	ACTGG	2 cut(s)	125, 212
BssECI	CCNNGG	3 cut(s)	164, 194, 213
BssMI	GATC	2 cut(s)	38, 316
BssT1I	CCWWGG	1 cut(s)	213
Bst4CI	ACNGT	1 cut(s)	235
Bst6I	CTCTTC	1 cut(s)	327
BstBAI	YACGTR	1 cut(s)	20
BstDEI	CTNAG	2 cut(s)	249, 345
BstF5I	GGATG	1 cut(s)	48
BstKTI	GATC	2 cut(s)	41, 319
BstMAI	GTCTC	4 cut(s)	98, 148, 216, 287
BstMBI	GATC	2 cut(s)	38, 316
BstSCI	CCNGG	1 cut(s)	164
BstSFI	CTRYAG	2 cut(s)	180, 279
BstV1I	GCAGC	1 cut(s)	265
BtrI	CACGTC	1 cut(s)	226
BtsCI	GGATG	1 cut(s)	48
BtsIMutI	CAGTG	4 cut(s)	93, 118, 205, 246
Cfr13I	GGNCC	2 cut(s)	4, 210
Csp6I	GTAC	1 cut(s)	59
CviJI	RGCY	2 cut(s)	161, 278
CviKI_1	RGCY	2 cut(s)	161, 278
CviQI	GTAC	1 cut(s)	59
DdeI	CTNAG	2 cut(s)	249, 345
DpnI	GATC	2 cut(s)	40, 318
DpnII	GATC	2 cut(s)	38, 316
Eam1104I	CTCTTC	1 cut(s)	327
EarI	CTCTTC	1 cut(s)	327
Eco130I	CCWWGG	1 cut(s)	213
Eco31I	GGTCTC	1 cut(s)	98
Eco47I	GGWCC	2 cut(s)	4, 210
EcoT14I	CCWWGG	1 cut(s)	213
ErhI	CCWWGG	1 cut(s)	213
Esp3I	CGTCTC	1 cut(s)	216
FaiI	YATR	2 cut(s)	76, 239
FblI	GTMKAC	1 cut(s)	285
Fnu4HI	GCNGC	2 cut(s)	276, 279
FokI	GGATG	1 cut(s)	35
Fsp4HI	GCNGC	2 cut(s)	276, 279
FspBI	CTAG	1 cut(s)	188
GluI	GCNGC	2 cut(s)	276, 279
GsuI	CTGGAG	1 cut(s)	142
HapII	CCGG	2 cut(s)	52, 166
HincII	GTYRAC	1 cut(s)	286
HindII	GTYRAC	1 cut(s)	286
HinfI	GANTC	4 cut(s)	108, 176, 311, 325
HpaII	CCGG	2 cut(s)	52, 166
HphI	GGTGA	1 cut(s)	229
Hpy166II	GTNNAC	3 cut(s)	59, 229, 286
Hpy188I	TCNGA	1 cut(s)	316
Hpy188III	TCNNGA	4 cut(s)	95, 151, 188, 329
Hpy8I	GTNNAC	3 cut(s)	59, 229, 286
HpyCH4III	ACNGT	1 cut(s)	235
HpyCH4IV	ACGT	2 cut(s)	19, 225
HpyCH4V	TGCA	1 cut(s)	281
HpyF3I	CTNAG	2 cut(s)	249, 345
HpySE526I	ACGT	2 cut(s)	19, 225
Kzo9I	GATC	2 cut(s)	38, 316
LmnI	GCTCC	1 cut(s)	138
LpnPI	CCDG	8 cut(s)	65, 106, 121, 127, 179, 193, 257, 321
Lsp1109I	GCAGC	1 cut(s)	265
MaeI	CTAG	1 cut(s)	188
MaeII	ACGT	2 cut(s)	19, 225
MalI	GATC	2 cut(s)	40, 318
MboI	GATC	2 cut(s)	38, 316
MboII	GAAGA	3 cut(s)	117, 185, 344
MluCI	AATT	1 cut(s)	33
MnlI	CCTC	3 cut(s)	18, 204, 244
MslI	CAYNNNNRTG	1 cut(s)	236
MspI	CCGG	2 cut(s)	52, 166
MspR9I	CCNGG	1 cut(s)	166
NciI	CCSGG	1 cut(s)	166
NdeII	GATC	2 cut(s)	38, 316
NlaIV	GGNNCC	2 cut(s)	6, 200
NmeAIII	GCCGAG	1 cut(s)	175
PcsI	WCGNNNNNNNCGW	1 cut(s)	231
PfeI	GAWTC	4 cut(s)	108, 176, 311, 325
PkrI	GCNGC	2 cut(s)	277, 280
Ppu21I	YACGTR	1 cut(s)	20
PspN4I	GGNNCC	2 cut(s)	6, 200
PspPI	GGNCC	2 cut(s)	4, 210
PstI	CTGCAG	1 cut(s)	283
RsaI	GTAC	1 cut(s)	60
RsaNI	GTAC	1 cut(s)	59
RseI	CAYNNNNRTG	1 cut(s)	236
SalI	GTCGAC	1 cut(s)	284
SatI	GCNGC	2 cut(s)	276, 279
Sau3AI	GATC	2 cut(s)	38, 316
Sau96I	GGNCC	2 cut(s)	4, 210
ScrFI	CCNGG	1 cut(s)	166
SetI	ASST	6 cut(s)	22, 30, 74, 187, 219, 228
SfcI	CTRYAG	2 cut(s)	180, 279
SinI	GGWCC	2 cut(s)	4, 210
SmiMI	CAYNNNNRTG	1 cut(s)	236
Sse9I	AATT	1 cut(s)	33
SsiI	CCGC	2 cut(s)	202, 275
SspMI	CTAG	1 cut(s)	188
StyD4I	CCNGG	1 cut(s)	164
StyI	CCWWGG	1 cut(s)	213
TaaI	ACNGT	1 cut(s)	235
TaiI	ACGT	2 cut(s)	22, 228
TaqI	TCGA	4 cut(s)	37, 96, 150, 285
TasI	AATT	1 cut(s)	33
TatI	WGTACW	1 cut(s)	58
TauI	GCSGC	1 cut(s)	278
TfiI	GAWTC	4 cut(s)	108, 176, 311, 325
TscAI	CASTG	4 cut(s)	93, 125, 212, 253
TseI	GCWGC	1 cut(s)	278
TspDTI	ATGAA	2 cut(s)	72, 254
TspRI	CASTG	4 cut(s)	93, 125, 212, 253
VpaK11BI	GGWCC	2 cut(s)	4, 210
XapI	RAATTY	1 cut(s)	33
XbaI	TCTAGA	1 cut(s)	187
XmiI	GTMKAC	1 cut(s)	285
XspI	CTAG	1 cut(s)	188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.