Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001919

Physical Location & Seq

Genomic Coordinates Forward (+)

74091751 .. 74092110

Gene Structure 360 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000021317

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGGATGACATATTCGGAGAGTCTCTGAACTTGGAAGAGATCCACATCAAGCAAGGCTTCGATGAAGGCCACAAAGACGGCCTGATCCCTGGAAAAGAGGACACCAAGCAAGTGGGCCTCAAAGTGGGTTTCGAGGTCAGGCGAGAAGCTCTGTTTTACAAGGGGTACATGGACGTATGGAACTCTGCGATATGGGTCGACTTGACGCAGTTCTCGACCTGGGTCCAAAAGCGCGTGAAGAAAATTGAGGAGTTGGTGGAGAGGTACCTAGTTATGGAACTTAAGAATAAGAGCGTGCAGGAGATAATGGAGGATTTGAGGTTGAAGTTTAAGGTGGTTTGTGCTTCTTTGGGTGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FTCD_N Yae1_N

Protein Analysis

120

Amino Acids

13.88

Weight (kDa)

5.45

Isoelectric Point (pI)

40.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001919)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06010
fragaria_vesca	FvH4_6g00460
malus_domestica	MD04G1245200.v1.1 MD09G1092600.v1.1 MD12G1086700.v1.1 MD17G1082700.v1.1
prunus_persica	Prupe.6G361800_v2.0.a1 Prupe.6G361800_v2.0.a1
pyrus_communis	pycom04g21590 pycom12g23890
rosa_chinensis	RchiOBHm_Chr2g0127151 RchiOBHm_Chr3g0447831
rosa_laevigata	RLG00000015762 RLG00000018977 RLG00000018978 RLG00000021317
rosa_multiflora	Rmu_sc0005601.1_g000003 Rmu_sc0021156.1_g000003 Rmu_sc0026966.1_g000003 Rmu_ssc0000018.1_g000076
rosa_roxburghii	Rroxscaffold_2G00154490 Rroxscaffold_6G00426040
rosa_rugosa	Rorug02G0277000 Rorug02G0277100 Rorug02G0277200 Rorug02G0494200 Rorug02G0606200 Rorug02G0606300 Rorug02G0606400
rosa_samantha	Rh2AG327600 Rh2AG327700 Rh2AG560300 Rh2BG337700 Rh2BG573600 Rh2CG314600 Rh2CG543900 Rh2DG354600 Rh2DG354800 Rh2DG583600 Rh3AG005600 Rh3BG005300 Rh3CG005500 Rh3DG005800
rosa_wichuraiana	Rw0G013430 Rw2G026580 Rw3G000420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	264
AccB1I	GGYRCC	1 cut(s)	264
AccI	GTMKAC	1 cut(s)	198
AccII	CGCG	1 cut(s)	234
AclWI	GGATC	2 cut(s)	34, 79
AfaI	GTAC	2 cut(s)	167, 266
AfiI	CCNNNNNNNGG	2 cut(s)	124, 274
AflII	CTTAAG	1 cut(s)	281
AgsI	TTSAA	1 cut(s)	325
AjnI	CCWGG	2 cut(s)	88, 218
AluBI	AGCT	1 cut(s)	149
AluI	AGCT	1 cut(s)	149
Alw26I	GTCTC	1 cut(s)	27
AlwI	GGATC	2 cut(s)	34, 79
AoxI	GGCC	3 cut(s)	67, 79, 115
Asp718I	GGTACC	1 cut(s)	264
AspLEI	GCGC	1 cut(s)	234
AspS9I	GGNCC	2 cut(s)	115, 223
AvaII	GGWCC	1 cut(s)	223
BanI	GGYRCC	1 cut(s)	264
BceAI	ACGGC	1 cut(s)	94
BciT130I	CCWGG	2 cut(s)	90, 220
BcoDI	GTCTC	1 cut(s)	27
BfaI	CTAG	1 cut(s)	269
BfrI	CTTAAG	1 cut(s)	281
Bme1390I	CCNGG	2 cut(s)	90, 220
Bme18I	GGWCC	1 cut(s)	223
BmgT120I	GGNCC	2 cut(s)	115, 223
BmiI	GGNNCC	2 cut(s)	224, 266
BmrFI	CCNGG	2 cut(s)	90, 220
BoxI	GACNNNNGTC	1 cut(s)	221
BsaBI	GATNNNNATC	1 cut(s)	44
BsaJI	CCNNGG	2 cut(s)	88, 219
Bsc4I	CCNNNNNNNGG	2 cut(s)	124, 274
Bse8I	GATNNNNATC	1 cut(s)	44
BseBI	CCWGG	2 cut(s)	90, 220
BseDI	CCNNGG	2 cut(s)	88, 219
BseGI	GGATG	1 cut(s)	10
BseJI	GATNNNNATC	1 cut(s)	44
BseLI	CCNNNNNNNGG	2 cut(s)	124, 274
BseRI	GAGGAG	1 cut(s)	263
BsgI	GTGCAG	1 cut(s)	317
Bsh1236I	CGCG	1 cut(s)	234
BshFI	GGCC	3 cut(s)	69, 81, 117
BshNI	GGYRCC	1 cut(s)	264
BslI	CCNNNNNNNGG	2 cut(s)	124, 274
BsmAI	GTCTC	1 cut(s)	27
BsnI	GGCC	3 cut(s)	69, 81, 117
Bsp143I	GATC	2 cut(s)	39, 84
BspANI	GGCC	3 cut(s)	69, 81, 117
BspFNI	CGCG	1 cut(s)	234
BspLI	GGNNCC	2 cut(s)	224, 266
BspPI	GGATC	2 cut(s)	34, 79
BspT107I	GGYRCC	1 cut(s)	264
BspTI	CTTAAG	1 cut(s)	281
BssECI	CCNNGG	2 cut(s)	88, 219
BssMI	GATC	2 cut(s)	39, 84
Bst2UI	CCWGG	2 cut(s)	90, 220
Bst6I	CTCTTC	1 cut(s)	30
BstAFI	CTTAAG	1 cut(s)	281
BstC8I	GCNNGC	1 cut(s)	296
BstF5I	GGATG	1 cut(s)	10
BstFNI	CGCG	1 cut(s)	234
BstHHI	GCGC	1 cut(s)	234
BstKTI	GATC	2 cut(s)	42, 87
BstMAI	GTCTC	1 cut(s)	27
BstMBI	GATC	2 cut(s)	39, 84
BstNI	CCWGG	2 cut(s)	90, 220
BstPAI	GACNNNNGTC	1 cut(s)	221
BstSCI	CCNGG	2 cut(s)	88, 218
BstUI	CGCG	1 cut(s)	234
BstX2I	RGATCY	1 cut(s)	39
BstXI	CCANNNNNNTGG	1 cut(s)	112
BstYI	RGATCY	1 cut(s)	39
BsuRI	GGCC	3 cut(s)	69, 81, 117
BtsCI	GGATG	1 cut(s)	10
Cac8I	GCNNGC	1 cut(s)	296
CfoI	GCGC	1 cut(s)	234
Cfr13I	GGNCC	2 cut(s)	115, 223
CseI	GACGC	1 cut(s)	214
Csp6I	GTAC	2 cut(s)	166, 265
CviAII	CATG	1 cut(s)	169
CviJI	RGCY	5 cut(s)	57, 69, 81, 117, 149
CviKI_1	RGCY	5 cut(s)	57, 69, 81, 117, 149
CviQI	GTAC	2 cut(s)	166, 265
DpnI	GATC	2 cut(s)	41, 86
DpnII	GATC	2 cut(s)	39, 84
Eam1104I	CTCTTC	1 cut(s)	30
EarI	CTCTTC	1 cut(s)	30
Eco47I	GGWCC	1 cut(s)	223
EcoRII	CCWGG	2 cut(s)	88, 218
FaeI	CATG	1 cut(s)	172
FaiI	YATR	5 cut(s)	11, 170, 178, 193, 275
FalI	AAGNNNNNCTT	2 cut(s)	41, 73
FatI	CATG	1 cut(s)	168
FblI	GTMKAC	1 cut(s)	198
FokI	GGATG	1 cut(s)	17
FspBI	CTAG	1 cut(s)	269
GlaI	GCGC	1 cut(s)	233
HaeIII	GGCC	3 cut(s)	69, 81, 117
HgaI	GACGC	1 cut(s)	214
HhaI	GCGC	1 cut(s)	234
Hin1II	CATG	1 cut(s)	172
Hin6I	GCGC	1 cut(s)	232
HinP1I	GCGC	1 cut(s)	232
HincII	GTYRAC	1 cut(s)	199
HindII	GTYRAC	1 cut(s)	199
HinfI	GANTC	1 cut(s)	20
Hpy166II	GTNNAC	1 cut(s)	199
Hpy188I	TCNGA	2 cut(s)	17, 27
Hpy188III	TCNNGA	1 cut(s)	214
Hpy8I	GTNNAC	1 cut(s)	199
HpyAV	CCTTC	1 cut(s)	59
HpyCH4IV	ACGT	1 cut(s)	174
HpyCH4V	TGCA	1 cut(s)	298
HpySE526I	ACGT	1 cut(s)	174
Hsp92II	CATG	1 cut(s)	172
HspAI	GCGC	1 cut(s)	232
KpnI	GGTACC	1 cut(s)	268
Kzo9I	GATC	2 cut(s)	39, 84
LpnPI	CCDG	7 cut(s)	75, 95, 102, 124, 205, 232, 284
MaeI	CTAG	1 cut(s)	269
MaeII	ACGT	1 cut(s)	174
MalI	GATC	2 cut(s)	41, 86
MboI	GATC	2 cut(s)	39, 84
MboII	GAAGA	2 cut(s)	47, 250
MflI	RGATCY	1 cut(s)	39
MluCI	AATT	1 cut(s)	243
MlyI	GAGTC	1 cut(s)	29
MnlI	CCTC	7 cut(s)	91, 127, 128, 241, 255, 304, 312
MseI	TTAA	2 cut(s)	282, 330
MspCI	CTTAAG	1 cut(s)	281
MspR9I	CCNGG	2 cut(s)	90, 220
MvaI	CCWGG	2 cut(s)	90, 220
MvnI	CGCG	1 cut(s)	234
NdeII	GATC	2 cut(s)	39, 84
NlaIII	CATG	1 cut(s)	172
NlaIV	GGNNCC	2 cut(s)	224, 266
PcsI	WCGNNNNNNNCGW	1 cut(s)	212
PleI	GAGTC	1 cut(s)	28
PpsI	GAGTC	1 cut(s)	28
PshAI	GACNNNNGTC	1 cut(s)	221
Psp6I	CCWGG	2 cut(s)	88, 218
PspGI	CCWGG	2 cut(s)	88, 218
PspN4I	GGNNCC	2 cut(s)	224, 266
PspPI	GGNCC	2 cut(s)	115, 223
PsuI	RGATCY	1 cut(s)	39
RsaI	GTAC	2 cut(s)	167, 266
RsaNI	GTAC	2 cut(s)	166, 265
SalI	GTCGAC	1 cut(s)	197
SaqAI	TTAA	2 cut(s)	282, 330
Sau3AI	GATC	2 cut(s)	39, 84
Sau96I	GGNCC	2 cut(s)	115, 223
SchI	GAGTC	1 cut(s)	29
ScrFI	CCNGG	2 cut(s)	90, 220
SetI	ASST	8 cut(s)	138, 151, 177, 221, 266, 270, 323, 336
SinI	GGWCC	1 cut(s)	223
SmlI	CTYRAG	1 cut(s)	281
SmoI	CTYRAG	1 cut(s)	281
Sse9I	AATT	1 cut(s)	243
SspMI	CTAG	1 cut(s)	269
StyD4I	CCNGG	2 cut(s)	88, 218
TaiI	ACGT	1 cut(s)	177
TaqI	TCGA	4 cut(s)	60, 132, 198, 215
TasI	AATT	1 cut(s)	243
Tru1I	TTAA	2 cut(s)	282, 330
Tru9I	TTAA	2 cut(s)	282, 330
TspDTI	ATGAA	1 cut(s)	78
Vha464I	CTTAAG	1 cut(s)	281
VpaK11BI	GGWCC	1 cut(s)	223
XmiI	GTMKAC	1 cut(s)	198
XspI	CTAG	1 cut(s)	269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.