Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001919

Physical Location & Seq

Genomic Coordinates Reverse (-)

72387995 .. 72388763

Gene Structure 769 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0606400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGATGATGCCTCGTTGTGGGGTGCCGGACATCATCAATGGCACTTCGGGGATGCGTTTAGGCAAGAAAAGTCGTGTTCAATTGATACCACCGCTCACTATTCATTTTTCAGTTGAAACCCCAAGTGGCCTTCATCAAAGTACCATCTCACCTACGTACGGTTTTCTCCCCGAGACCTTAGATCGAGCCAAGGGTCCCGTGGCACGGGCTTTCGAAACATGGGCTGCTAATACACACTTCACGTTCAGCCAGGCACAGAGCGCGGACCTGAAGGTCGGTTTCCACAGCGGTGATCAACTGATCATGGAGACGGCTACCCATATGACGGACGCAAGGGATCCTGGCTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

116

Amino Acids

12.6

Weight (kDa)

6.96

Isoelectric Point (pI)

24.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001919)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06010
fragaria_vesca	FvH4_6g00460
malus_domestica	MD04G1245200.v1.1 MD09G1092600.v1.1 MD12G1086700.v1.1 MD17G1082700.v1.1
prunus_persica	Prupe.6G361800_v2.0.a1 Prupe.6G361800_v2.0.a1
pyrus_communis	pycom04g21590 pycom12g23890
rosa_chinensis	RchiOBHm_Chr2g0127151 RchiOBHm_Chr3g0447831
rosa_laevigata	RLG00000015762 RLG00000018977 RLG00000018978 RLG00000021317
rosa_multiflora	Rmu_sc0005601.1_g000003 Rmu_sc0021156.1_g000003 Rmu_sc0026966.1_g000003 Rmu_ssc0000018.1_g000076
rosa_roxburghii	Rroxscaffold_2G00154490 Rroxscaffold_6G00426040
rosa_rugosa	Rorug02G0277000 Rorug02G0277100 Rorug02G0277200 Rorug02G0494200 Rorug02G0606200 Rorug02G0606300 Rorug02G0606400
rosa_samantha	Rh2AG327600 Rh2AG327700 Rh2AG560300 Rh2BG337700 Rh2BG573600 Rh2CG314600 Rh2CG543900 Rh2DG354600 Rh2DG354800 Rh2DG583600 Rh3AG005600 Rh3BG005300 Rh3CG005500 Rh3DG005800
rosa_wichuraiana	Rw0G013430 Rw2G026580 Rw3G000420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	272
AccB1I	GGYRCC	1 cut(s)	22
AccBSI	CCGCTC	1 cut(s)	94
AccII	CGCG	1 cut(s)	263
AciI	CCGC	3 cut(s)	92, 263, 288
AclWI	GGATC	2 cut(s)	332, 345
AcuI	CTGAAG	1 cut(s)	290
AfaI	GTAC	2 cut(s)	142, 158
AfiI	CCNNNNNNNGG	4 cut(s)	17, 158, 204, 325
AgsI	TTSAA	2 cut(s)	80, 116
AjnI	CCWGG	2 cut(s)	249, 340
AleI	CACNNNNGTG	1 cut(s)	288
Alw26I	GTCTC	2 cut(s)	167, 302
AlwI	GGATC	2 cut(s)	332, 345
Ama87I	CYCGRG	1 cut(s)	170
AoxI	GGCC	1 cut(s)	127
ApeKI	GCWGC	1 cut(s)	224
AspLEI	GCGC	1 cut(s)	263
AspS9I	GGNCC	2 cut(s)	194, 265
AsuHPI	GGTGA	2 cut(s)	141, 302
AsuII	TTCGAA	1 cut(s)	213
AvaI	CYCGRG	1 cut(s)	170
AvaII	GGWCC	2 cut(s)	194, 265
BamHI	GGATCC	1 cut(s)	337
BanI	GGYRCC	1 cut(s)	22
BbvI	GCAGC	1 cut(s)	211
BccI	CCATC	1 cut(s)	152
BceAI	ACGGC	1 cut(s)	327
BciT130I	CCWGG	2 cut(s)	251, 342
BclI	TGATCA	2 cut(s)	292, 300
BcoDI	GTCTC	2 cut(s)	167, 302
BisI	GCNGC	1 cut(s)	225
BlsI	GCNGC	1 cut(s)	226
Bme1390I	CCNGG	2 cut(s)	251, 342
Bme18I	GGWCC	2 cut(s)	194, 265
BmeT110I	CYCGRG	1 cut(s)	170
BmgT120I	GGNCC	2 cut(s)	194, 265
BmiI	GGNNCC	4 cut(s)	24, 195, 196, 339
BmrFI	CCNGG	2 cut(s)	251, 342
BmsI	GCATC	1 cut(s)	42
Bpu14I	TTCGAA	1 cut(s)	213
BsaAI	YACGTR	1 cut(s)	156
BsaI	GGTCTC	1 cut(s)	167
BsaJI	CCNNGG	2 cut(s)	189, 198
Bsc4I	CCNNNNNNNGG	4 cut(s)	17, 158, 204, 325
BseBI	CCWGG	2 cut(s)	251, 342
BseDI	CCNNGG	2 cut(s)	189, 198
BseGI	GGATG	1 cut(s)	57
BseLI	CCNNNNNNNGG	4 cut(s)	17, 158, 204, 325
BseXI	GCAGC	1 cut(s)	211
Bsh1236I	CGCG	1 cut(s)	263
BshFI	GGCC	1 cut(s)	129
BshNI	GGYRCC	1 cut(s)	22
BsiHKCI	CYCGRG	1 cut(s)	170
BsiSI	CCGG	1 cut(s)	26
BsiWI	CGTACG	1 cut(s)	156
BslFI	GGGAC	1 cut(s)	180
BslI	CCNNNNNNNGG	4 cut(s)	17, 158, 204, 325
BsmAI	GTCTC	2 cut(s)	167, 302
BsmBI	CGTCTC	1 cut(s)	302
BsmFI	GGGAC	1 cut(s)	180
BsnI	GGCC	1 cut(s)	129
Bso31I	GGTCTC	1 cut(s)	167
BsoBI	CYCGRG	1 cut(s)	170
Bsp119I	TTCGAA	1 cut(s)	213
Bsp143I	GATC	4 cut(s)	181, 292, 300, 337
BspACI	CCGC	3 cut(s)	92, 263, 288
BspANI	GGCC	1 cut(s)	129
BspFNI	CGCG	1 cut(s)	263
BspHI	TCATGA	1 cut(s)	347
BspLI	GGNNCC	4 cut(s)	24, 195, 196, 339
BspPI	GGATC	2 cut(s)	332, 345
BspT104I	TTCGAA	1 cut(s)	213
BspT107I	GGYRCC	1 cut(s)	22
BspTNI	GGTCTC	1 cut(s)	167
BsrBI	CCGCTC	1 cut(s)	94
BssECI	CCNNGG	2 cut(s)	189, 198
BssMI	GATC	4 cut(s)	181, 292, 300, 337
BssT1I	CCWWGG	1 cut(s)	189
Bst2UI	CCWGG	2 cut(s)	251, 342
Bst4CI	ACNGT	1 cut(s)	161
BstBAI	YACGTR	1 cut(s)	156
BstBI	TTCGAA	1 cut(s)	213
BstDEI	CTNAG	1 cut(s)	178
BstDSI	CCRYGG	1 cut(s)	198
BstF5I	GGATG	1 cut(s)	57
BstFNI	CGCG	1 cut(s)	263
BstHHI	GCGC	1 cut(s)	263
BstKTI	GATC	4 cut(s)	184, 295, 303, 340
BstMAI	GTCTC	2 cut(s)	167, 302
BstMBI	GATC	4 cut(s)	181, 292, 300, 337
BstMWI	GCNNNNNNNGC	1 cut(s)	260
BstNI	CCWGG	2 cut(s)	251, 342
BstSCI	CCNGG	2 cut(s)	249, 340
BstSNI	TACGTA	1 cut(s)	156
BstUI	CGCG	1 cut(s)	263
BstV1I	GCAGC	1 cut(s)	211
BstX2I	RGATCY	1 cut(s)	337
BstYI	RGATCY	1 cut(s)	337
BsuRI	GGCC	1 cut(s)	129
BtgI	CCRYGG	1 cut(s)	198
BtsCI	GGATG	1 cut(s)	57
CciI	TCATGA	1 cut(s)	347
CfoI	GCGC	1 cut(s)	263
Cfr13I	GGNCC	2 cut(s)	194, 265
CseI	GACGC	1 cut(s)	338
Csp6I	GTAC	2 cut(s)	141, 157
CviAII	CATG	3 cut(s)	219, 304, 348
CviJI	RGCY	7 cut(s)	129, 188, 209, 224, 249, 314, 345
CviKI_1	RGCY	7 cut(s)	129, 188, 209, 224, 249, 314, 345
CviQI	GTAC	2 cut(s)	141, 157
DdeI	CTNAG	1 cut(s)	178
DpnI	GATC	4 cut(s)	183, 294, 302, 339
DpnII	GATC	4 cut(s)	181, 292, 300, 337
DrdI	GACNNNNNNGTC	1 cut(s)	272
DseDI	GACNNNNNNGTC	1 cut(s)	272
Eco105I	TACGTA	1 cut(s)	156
Eco130I	CCWWGG	1 cut(s)	189
Eco31I	GGTCTC	1 cut(s)	167
Eco47I	GGWCC	2 cut(s)	194, 265
Eco57I	CTGAAG	1 cut(s)	290
Eco88I	CYCGRG	1 cut(s)	170
EcoO109I	RGGNCCY	1 cut(s)	194
EcoRII	CCWGG	2 cut(s)	249, 340
EcoT14I	CCWWGG	1 cut(s)	189
ErhI	CCWWGG	1 cut(s)	189
Esp3I	CGTCTC	1 cut(s)	302
FaeI	CATG	3 cut(s)	222, 307, 351
FaiI	YATR	5 cut(s)	220, 305, 321, 323, 349
FaqI	GGGAC	1 cut(s)	180
FatI	CATG	3 cut(s)	218, 303, 347
FauNDI	CATATG	1 cut(s)	321
FbaI	TGATCA	2 cut(s)	292, 300
Fnu4HI	GCNGC	1 cut(s)	225
FokI	GGATG	1 cut(s)	64
Fsp4HI	GCNGC	1 cut(s)	225
GlaI	GCGC	1 cut(s)	262
GluI	GCNGC	1 cut(s)	225
HaeIII	GGCC	1 cut(s)	129
HapII	CCGG	1 cut(s)	26
HgaI	GACGC	1 cut(s)	338
HhaI	GCGC	1 cut(s)	263
Hin1II	CATG	3 cut(s)	222, 307, 351
Hin6I	GCGC	1 cut(s)	261
HinP1I	GCGC	1 cut(s)	261
HpaII	CCGG	1 cut(s)	26
HphI	GGTGA	2 cut(s)	141, 302
Hpy188III	TCNNGA	1 cut(s)	348
HpyAV	CCTTC	2 cut(s)	140, 265
HpyCH4III	ACNGT	1 cut(s)	161
HpyCH4IV	ACGT	2 cut(s)	155, 242
HpyF10VI	GCNNNNNNNGC	1 cut(s)	260
HpyF3I	CTNAG	1 cut(s)	178
HpySE526I	ACGT	2 cut(s)	155, 242
Hsp92II	CATG	3 cut(s)	222, 307, 351
HspAI	GCGC	1 cut(s)	261
KflI	GGGWCCC	1 cut(s)	194
Ksp22I	TGATCA	2 cut(s)	292, 300
Kzo9I	GATC	4 cut(s)	181, 292, 300, 337
LpnPI	CCDG	5 cut(s)	39, 236, 263, 281, 327
Lsp1109I	GCAGC	1 cut(s)	211
LweI	GCATC	1 cut(s)	42
MaeII	ACGT	2 cut(s)	155, 242
MalI	GATC	4 cut(s)	183, 294, 302, 339
MbiI	CCGCTC	1 cut(s)	94
MboI	GATC	4 cut(s)	181, 292, 300, 337
MfeI	CAATTG	1 cut(s)	80
MflI	RGATCY	1 cut(s)	337
MluCI	AATT	1 cut(s)	80
MnlI	CCTC	1 cut(s)	21
MslI	CAYNNNNRTG	1 cut(s)	288
MspA1I	CMGCKG	1 cut(s)	288
MspI	CCGG	1 cut(s)	26
MspR9I	CCNGG	2 cut(s)	251, 342
MunI	CAATTG	1 cut(s)	80
MvaI	CCWGG	2 cut(s)	251, 342
MvnI	CGCG	1 cut(s)	263
MwoI	GCNNNNNNNGC	1 cut(s)	260
NdeI	CATATG	1 cut(s)	321
NdeII	GATC	4 cut(s)	181, 292, 300, 337
NlaIII	CATG	3 cut(s)	222, 307, 351
NlaIV	GGNNCC	4 cut(s)	24, 195, 196, 339
NspV	TTCGAA	1 cut(s)	213
OliI	CACNNNNGTG	1 cut(s)	288
PagI	TCATGA	1 cut(s)	347
Pfl23II	CGTACG	1 cut(s)	156
PkrI	GCNGC	1 cut(s)	226
Ppu21I	YACGTR	1 cut(s)	156
PpuMI	RGGWCCY	1 cut(s)	194
Psp5II	RGGWCCY	1 cut(s)	194
Psp6I	CCWGG	2 cut(s)	249, 340
PspGI	CCWGG	2 cut(s)	249, 340
PspLI	CGTACG	1 cut(s)	156
PspN4I	GGNNCC	4 cut(s)	24, 195, 196, 339
PspPI	GGNCC	2 cut(s)	194, 265
PspPPI	RGGWCCY	1 cut(s)	194
PsuI	RGATCY	1 cut(s)	337
RsaI	GTAC	2 cut(s)	142, 158
RsaNI	GTAC	2 cut(s)	141, 157
RseI	CAYNNNNRTG	1 cut(s)	288
SatI	GCNGC	1 cut(s)	225
Sau3AI	GATC	4 cut(s)	181, 292, 300, 337
Sau96I	GGNCC	2 cut(s)	194, 265
ScrFI	CCNGG	2 cut(s)	251, 342
SetI	ASST	6 cut(s)	154, 158, 179, 245, 270, 276
SfaNI	GCATC	1 cut(s)	42
SfuI	TTCGAA	1 cut(s)	213
SinI	GGWCC	2 cut(s)	194, 265
SmiMI	CAYNNNNRTG	1 cut(s)	288
SnaBI	TACGTA	1 cut(s)	156
Sse9I	AATT	1 cut(s)	80
SsiI	CCGC	3 cut(s)	92, 263, 288
StyD4I	CCNGG	2 cut(s)	249, 340
StyI	CCWWGG	1 cut(s)	189
TaaI	ACNGT	1 cut(s)	161
TaiI	ACGT	2 cut(s)	158, 245
TaqI	TCGA	2 cut(s)	184, 213
TasI	AATT	1 cut(s)	80
TseI	GCWGC	1 cut(s)	224
TspDTI	ATGAA	2 cut(s)	92, 122
TspGWI	ACGGA	1 cut(s)	341
VpaK11BI	GGWCC	2 cut(s)	194, 265
XcmI	CCANNNNNNNNNTGG	1 cut(s)	196

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.