Rroxscaffold_2G00154490

Formiminotransferase domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0001919
Physical Location & Seq
Forward (+)
91098015 .. 91101161
3147 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00154490.1

Sequence Viewer

Length: 486 bp
ATGAAAACTTCTTCGGCCCTAAGCCACAAAGCTGAATGGGCCAAGGGCCATTGGAGACTGCAGATCACTACACAAACAGCAACAGAGTCTCTGAACTTCGAAGAGATCCACATCAAGCAAGGCTTCGACGAAGGCCACAAAGACGGCCTGATCGCCGGAAAAGAGGAGGCCAGGCAAGTGGGCCTCAAGGTGGGCTTCGAGGTCGGTGAGGAGCTCGGGTTCTACAAGGGCTGCGTGGAGGTATGGAACTCTGTGATCCGGGTCGACCTGACCCGGTTCTCGACCCGGGTCCAGAAGGGCGTGAAGCAGATGGAGGAGTTGGTGGAGAGGTACCCAGTAATGGAACCCGAGAATGAGAGCGTGCAGGAGATAATGGAGGATTTGAGGTTGAAGTTTAAGGCGGTTTGTGCTTCTTTGGGTGTGAAATTGGAGTACAAAGGGTACCCGAGAGCGTCTTCTTCTGGGGCTAAAGACGTTGCGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FTCD_N Yae1_N

Protein Analysis

161

Amino Acids

18.17

Weight (kDa)

6.13

Isoelectric Point (pI)

36.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Yae1_N PF09811 41 - 79 2.1e-08 Essential protein Yae1, N terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 330, 441
AccB1I GGYRCC 2 cut(s) 330, 441
AccI GTMKAC 1 cut(s) 264
AciI CCGC 1 cut(s) 401
AclWI GGATC 2 cut(s) 100, 250
AfaI GTAC 3 cut(s) 332, 434, 443
AfiI CCNNNNNNNGG 2 cut(s) 190, 340
AgsI TTSAA 1 cut(s) 391
AjnI CCWGG 1 cut(s) 170
AloI GAACNNNNNNTCC 2 cut(s) 203, 235
AluBI AGCT 2 cut(s) 32, 214
AluI AGCT 2 cut(s) 32, 214
Alw21I GWGCWC 1 cut(s) 216
Alw26I GTCTC 2 cut(s) 49, 93
AlwI GGATC 2 cut(s) 100, 250
Ama87I CYCGRG 4 cut(s) 215, 285, 347, 445
AoxI GGCC 7 cut(s) 15, 39, 46, 133, 145, 168, 181
ApeKI GCWGC 1 cut(s) 231
Asp718I GGTACC 2 cut(s) 330, 441
AspS9I GGNCC 5 cut(s) 16, 39, 46, 181, 289
AsuC2I CCSGG 4 cut(s) 260, 274, 286, 287
AsuHPI GGTGA 1 cut(s) 218
AsuII TTCGAA 1 cut(s) 99
AvaI CYCGRG 4 cut(s) 215, 285, 347, 445
AvaII GGWCC 1 cut(s) 289
BanI GGYRCC 2 cut(s) 330, 441
BanII GRGCYC 1 cut(s) 216
BbsI GAAGAC 1 cut(s) 447
Bbv12I GWGCWC 1 cut(s) 216
BbvI GCAGC 1 cut(s) 218
BccI CCATC 1 cut(s) 304
BceAI ACGGC 1 cut(s) 160
BciT130I CCWGG 1 cut(s) 172
BcnI CCSGG 4 cut(s) 260, 274, 286, 287
BcoDI GTCTC 2 cut(s) 49, 93
BfmI CTRYAG 1 cut(s) 59
BisI GCNGC 1 cut(s) 232
BlsI GCNGC 1 cut(s) 233
Bme1390I CCNGG 5 cut(s) 172, 260, 274, 286, 287
Bme18I GGWCC 1 cut(s) 289
BmeT110I CYCGRG 4 cut(s) 215, 285, 347, 445
BmgT120I GGNCC 5 cut(s) 16, 39, 46, 181, 289
BmiI GGNNCC 4 cut(s) 290, 332, 345, 443
BmrFI CCNGG 5 cut(s) 172, 260, 274, 286, 287
BmrI ACTGGG 1 cut(s) 329
BmuI ACTGGG 1 cut(s) 329
BoxI GACNNNNGTC 1 cut(s) 287
BpiI GAAGAC 1 cut(s) 447
Bpu10I CCTNAGC 1 cut(s) 20
Bpu14I TTCGAA 1 cut(s) 99
BpuEI CTTGAG 1 cut(s) 170
BpuMI CCSGG 4 cut(s) 260, 274, 286, 287
BsaBI GATNNNNATC 1 cut(s) 110
BsaJI CCNNGG 2 cut(s) 42, 285
BsaXI ACNNNNNCTCC 2 cut(s) 203, 233
Bsc4I CCNNNNNNNGG 2 cut(s) 190, 340
Bse1I ACTGG 1 cut(s) 335
Bse8I GATNNNNATC 1 cut(s) 110
BseBI CCWGG 1 cut(s) 172
BseDI CCNNGG 2 cut(s) 42, 285
BseJI GATNNNNATC 1 cut(s) 110
BseLI CCNNNNNNNGG 2 cut(s) 190, 340
BseNI ACTGG 1 cut(s) 335
BseRI GAGGAG 3 cut(s) 179, 224, 329
BseXI GCAGC 1 cut(s) 218
BsgI GTGCAG 1 cut(s) 383
BshFI GGCC 7 cut(s) 17, 41, 48, 135, 147, 170, 183
BshNI GGYRCC 2 cut(s) 330, 441
BsiHKAI GWGCWC 1 cut(s) 216
BsiHKCI CYCGRG 4 cut(s) 215, 285, 347, 445
BsiSI CCGG 4 cut(s) 156, 259, 274, 286
BslI CCNNNNNNNGG 2 cut(s) 190, 340
BsmAI GTCTC 2 cut(s) 49, 93
BsnI GGCC 7 cut(s) 17, 41, 48, 135, 147, 170, 183
BsoBI CYCGRG 4 cut(s) 215, 285, 347, 445
Bsp119I TTCGAA 1 cut(s) 99
Bsp1286I GDGCHC 1 cut(s) 216
Bsp143I GATC 4 cut(s) 63, 105, 150, 255
BspACI CCGC 1 cut(s) 401
BspANI GGCC 7 cut(s) 17, 41, 48, 135, 147, 170, 183
BspLI GGNNCC 4 cut(s) 290, 332, 345, 443
BspMAI CTGCAG 1 cut(s) 63
BspPI GGATC 2 cut(s) 100, 250
BspT104I TTCGAA 1 cut(s) 99
BspT107I GGYRCC 2 cut(s) 330, 441
BsrI ACTGG 1 cut(s) 335
BssECI CCNNGG 2 cut(s) 42, 285
BssMI GATC 4 cut(s) 63, 105, 150, 255
BssT1I CCWWGG 1 cut(s) 42
Bst2UI CCWGG 1 cut(s) 172
Bst6I CTCTTC 1 cut(s) 96
BstBI TTCGAA 1 cut(s) 99
BstC8I GCNNGC 1 cut(s) 362
BstDEI CTNAG 1 cut(s) 20
BstKTI GATC 4 cut(s) 66, 108, 153, 258
BstMAI GTCTC 2 cut(s) 49, 93
BstMBI GATC 4 cut(s) 63, 105, 150, 255
BstMWI GCNNNNNNNGC 2 cut(s) 38, 407
BstNI CCWGG 1 cut(s) 172
BstPAI GACNNNNGTC 1 cut(s) 287
BstSCI CCNGG 5 cut(s) 170, 258, 272, 284, 285
BstSFI CTRYAG 1 cut(s) 59
BstV1I GCAGC 1 cut(s) 218
BstV2I GAAGAC 1 cut(s) 447
BstX2I RGATCY 1 cut(s) 105
BstXI CCANNNNNNTGG 1 cut(s) 178
BstYI RGATCY 1 cut(s) 105
BsuRI GGCC 7 cut(s) 17, 41, 48, 135, 147, 170, 183
Cac8I GCNNGC 1 cut(s) 362
Cfr13I GGNCC 5 cut(s) 16, 39, 46, 181, 289
Cfr9I CCCGGG 1 cut(s) 285
CseI GACGC 1 cut(s) 441
Csp6I GTAC 3 cut(s) 331, 433, 442
CviQI GTAC 3 cut(s) 331, 433, 442
DdeI CTNAG 1 cut(s) 20
DpnI GATC 4 cut(s) 65, 107, 152, 257
DpnII GATC 4 cut(s) 63, 105, 150, 255
Eam1104I CTCTTC 1 cut(s) 96
EarI CTCTTC 1 cut(s) 96
Ecl136II GAGCTC 1 cut(s) 214
Eco130I CCWWGG 1 cut(s) 42
Eco24I GRGCYC 1 cut(s) 216
Eco47I GGWCC 1 cut(s) 289
Eco53kI GAGCTC 1 cut(s) 214
Eco88I CYCGRG 4 cut(s) 215, 285, 347, 445
EcoICRI GAGCTC 1 cut(s) 214
EcoRII CCWGG 1 cut(s) 170
EcoT14I CCWWGG 1 cut(s) 42
EcoT38I GRGCYC 1 cut(s) 216
ErhI CCWWGG 1 cut(s) 42
FaiI YATR 1 cut(s) 244
FalI AAGNNNNNCTT 4 cut(s) 107, 139, 179, 211
FblI GTMKAC 1 cut(s) 264
Fnu4HI GCNGC 1 cut(s) 232
FriOI GRGCYC 1 cut(s) 216
Fsp4HI GCNGC 1 cut(s) 232
GluI GCNGC 1 cut(s) 232
HaeIII GGCC 7 cut(s) 17, 41, 48, 135, 147, 170, 183
HapII CCGG 4 cut(s) 156, 259, 274, 286
HgaI GACGC 1 cut(s) 441
HincII GTYRAC 1 cut(s) 265
HindII GTYRAC 1 cut(s) 265
HinfI GANTC 1 cut(s) 86
HpaII CCGG 4 cut(s) 156, 259, 274, 286
HphI GGTGA 1 cut(s) 218
Hpy166II GTNNAC 1 cut(s) 265
Hpy188I TCNGA 1 cut(s) 93
Hpy188III TCNNGA 2 cut(s) 280, 292
Hpy8I GTNNAC 1 cut(s) 265
Hpy99I CGWCG 1 cut(s) 131
HpyAV CCTTC 2 cut(s) 125, 289
HpyCH4IV ACGT 1 cut(s) 474
HpyCH4V TGCA 2 cut(s) 61, 364
HpyF10VI GCNNNNNNNGC 2 cut(s) 38, 407
HpyF3I CTNAG 1 cut(s) 20
HpySE526I ACGT 1 cut(s) 474
KpnI GGTACC 2 cut(s) 334, 445
Kzo9I GATC 4 cut(s) 63, 105, 150, 255
LmnI GCTCC 1 cut(s) 211
Lsp1109I GCAGC 1 cut(s) 218
MaeII ACGT 1 cut(s) 474
MalI GATC 4 cut(s) 65, 107, 152, 257
MboI GATC 4 cut(s) 63, 105, 150, 255
MboII GAAGA 4 cut(s) 3, 113, 447, 450
MflI RGATCY 1 cut(s) 105
MhlI GDGCHC 1 cut(s) 216
MluCI AATT 1 cut(s) 425
MlyI GAGTC 1 cut(s) 95
MseI TTAA 1 cut(s) 396
MspI CCGG 4 cut(s) 156, 259, 274, 286
MspR9I CCNGG 5 cut(s) 172, 260, 274, 286, 287
MvaI CCWGG 1 cut(s) 172
MwoI GCNNNNNNNGC 2 cut(s) 38, 407
NciI CCSGG 4 cut(s) 260, 274, 286, 287
NdeII GATC 4 cut(s) 63, 105, 150, 255
NlaIV GGNNCC 4 cut(s) 290, 332, 345, 443
NspV TTCGAA 1 cut(s) 99
PkrI GCNGC 1 cut(s) 233
PleI GAGTC 1 cut(s) 94
PpsI GAGTC 1 cut(s) 94
PshAI GACNNNNGTC 1 cut(s) 287
Psp124BI GAGCTC 1 cut(s) 216
Psp6I CCWGG 1 cut(s) 170
PspGI CCWGG 1 cut(s) 170
PspN4I GGNNCC 4 cut(s) 290, 332, 345, 443
PspPI GGNCC 5 cut(s) 16, 39, 46, 181, 289
PstI CTGCAG 1 cut(s) 63
PsuI RGATCY 1 cut(s) 105
RsaI GTAC 3 cut(s) 332, 434, 443
RsaNI GTAC 3 cut(s) 331, 433, 442
SacI GAGCTC 1 cut(s) 216
SalI GTCGAC 1 cut(s) 263
SaqAI TTAA 1 cut(s) 396
SatI GCNGC 1 cut(s) 232
Sau3AI GATC 4 cut(s) 63, 105, 150, 255
Sau96I GGNCC 5 cut(s) 16, 39, 46, 181, 289
SchI GAGTC 1 cut(s) 95
ScrFI CCNGG 5 cut(s) 172, 260, 274, 286, 287
SduI GDGCHC 1 cut(s) 216
SetI ASST 9 cut(s) 34, 192, 204, 216, 243, 270, 332, 389, 477
SfcI CTRYAG 1 cut(s) 59
SfuI TTCGAA 1 cut(s) 99
SinI GGWCC 1 cut(s) 289
SmaI CCCGGG 1 cut(s) 287
SmlI CTYRAG 1 cut(s) 185
SmoI CTYRAG 1 cut(s) 185
Sse9I AATT 1 cut(s) 425
SsiI CCGC 1 cut(s) 401
SstI GAGCTC 1 cut(s) 216
StyD4I CCNGG 5 cut(s) 170, 258, 272, 284, 285
StyI CCWWGG 1 cut(s) 42
TaiI ACGT 1 cut(s) 477
TaqI TCGA 5 cut(s) 99, 126, 198, 264, 281
TasI AATT 1 cut(s) 425
TatI WGTACW 1 cut(s) 432
Tru1I TTAA 1 cut(s) 396
Tru9I TTAA 1 cut(s) 396
TseI GCWGC 1 cut(s) 231
TspDTI ATGAA 1 cut(s) 17
TspMI CCCGGG 1 cut(s) 285
VpaK11BI GGWCC 1 cut(s) 289
XmaI CCCGGG 1 cut(s) 285
XmiI GTMKAC 1 cut(s) 264
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.