Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0001919

Physical Location & Seq

Genomic Coordinates Reverse (-)

400263 .. 403629

Gene Structure 3367 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G000420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGAACTGGCCTAAGCCAATTTTGAGCTCGAATCTTCCCATTCTTGTAATACCCGAGGAAAACACAAATTATTTTCAATTATTCTGGGTGAGGGCTGTTACAATTCCCGACCGAAGCCAAAGCCCAAGCCCAAGCGAGGCGAGTTTTAGTAGAAGCGTTTGTGTGTCTGGTAAGCGGCAACAAACACTGGAGAAGCGAAAGCTCAGGAGCAGGAGGAATGTGGAGAGACAAGCCCCCCGGTTTGAAGATTCTGTGGGTCTGGACCCTCGGCACCGCCGCTGGTGTCTGGTGTTGTTAGTTTTGGTTGCCAATGTGGTCAGGACCAGGGTGAGAGACATGGACACCCTTATGAACAACACTGAGGAGCATCATCATCAACAACAACGACACAGTGCCGCCGCCAACTCCGAGACAATTTTGGTGCCTGAATCCGATCAAGTGATTCGGGAAGAGAAATCCTCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

154

Amino Acids

17.89

Weight (kDa)

9.76

Isoelectric Point (pI)

76.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001919)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06010
fragaria_vesca	FvH4_6g00460
malus_domestica	MD04G1245200.v1.1 MD09G1092600.v1.1 MD12G1086700.v1.1 MD17G1082700.v1.1
prunus_persica	Prupe.6G361800_v2.0.a1 Prupe.6G361800_v2.0.a1
pyrus_communis	pycom04g21590 pycom12g23890
rosa_chinensis	RchiOBHm_Chr2g0127151 RchiOBHm_Chr3g0447831
rosa_laevigata	RLG00000015762 RLG00000018977 RLG00000018978 RLG00000021317
rosa_multiflora	Rmu_sc0005601.1_g000003 Rmu_sc0021156.1_g000003 Rmu_sc0026966.1_g000003 Rmu_ssc0000018.1_g000076
rosa_roxburghii	Rroxscaffold_2G00154490 Rroxscaffold_6G00426040
rosa_rugosa	Rorug02G0277000 Rorug02G0277100 Rorug02G0277200 Rorug02G0494200 Rorug02G0606200 Rorug02G0606300 Rorug02G0606400
rosa_samantha	Rh2AG327600 Rh2AG327700 Rh2AG560300 Rh2BG337700 Rh2BG573600 Rh2CG314600 Rh2CG543900 Rh2DG354600 Rh2DG354800 Rh2DG583600 Rh3AG005600 Rh3BG005300 Rh3CG005500 Rh3DG005800
rosa_wichuraiana	Rw0G013430 Rw2G026580 Rw3G000420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	270, 421
AciI	CCGC	5 cut(s)	175, 274, 277, 396, 399
AfiI	CCNNNNNNNGG	1 cut(s)	136
AgsI	TTSAA	2 cut(s)	77, 245
AjnI	CCWGG	1 cut(s)	323
AluBI	AGCT	2 cut(s)	27, 202
AluI	AGCT	2 cut(s)	27, 202
Alw21I	GWGCWC	1 cut(s)	29
Alw26I	GTCTC	3 cut(s)	220, 327, 404
Ama87I	CYCGRG	1 cut(s)	53
AoxI	GGCC	1 cut(s)	8
AspS9I	GGNCC	2 cut(s)	262, 321
AsuC2I	CCSGG	1 cut(s)	238
AsuHPI	GGTGA	2 cut(s)	100, 340
AvaI	CYCGRG	1 cut(s)	53
AvaII	GGWCC	2 cut(s)	262, 321
BanI	GGYRCC	2 cut(s)	270, 421
BanII	GRGCYC	1 cut(s)	29
Bbv12I	GWGCWC	1 cut(s)	29
BciT130I	CCWGG	1 cut(s)	325
BcnI	CCSGG	1 cut(s)	238
BcoDI	GTCTC	3 cut(s)	220, 327, 404
BisI	GCNGC	4 cut(s)	176, 277, 396, 399
BlsI	GCNGC	4 cut(s)	177, 278, 397, 400
Bme1390I	CCNGG	2 cut(s)	238, 325
Bme18I	GGWCC	2 cut(s)	262, 321
BmeT110I	CYCGRG	1 cut(s)	53
BmgT120I	GGNCC	2 cut(s)	262, 321
BmiI	GGNNCC	3 cut(s)	264, 272, 423
BmrFI	CCNGG	2 cut(s)	238, 325
BmsI	GCATC	1 cut(s)	376
BplI	GAGNNNNNCTC	1 cut(s)	443
BpmI	CTGGAG	1 cut(s)	209
Bpu10I	CCTNAGC	2 cut(s)	12, 203
BpuMI	CCSGG	1 cut(s)	238
BsaJI	CCNNGG	4 cut(s)	54, 236, 266, 324
Bsc4I	CCNNNNNNNGG	1 cut(s)	136
Bse1I	ACTGG	2 cut(s)	11, 192
BseBI	CCWGG	1 cut(s)	325
BseDI	CCNNGG	4 cut(s)	54, 236, 266, 324
BseLI	CCNNNNNNNGG	1 cut(s)	136
BseMII	CTCAG	2 cut(s)	217, 351
BseNI	ACTGG	2 cut(s)	11, 192
BseRI	GAGGAG	1 cut(s)	377
Bsh1285I	CGRYCG	1 cut(s)	112
BshFI	GGCC	1 cut(s)	10
BshNI	GGYRCC	2 cut(s)	270, 421
BsiEI	CGRYCG	1 cut(s)	112
BsiHKAI	GWGCWC	1 cut(s)	29
BsiHKCI	CYCGRG	1 cut(s)	53
BsiSI	CCGG	1 cut(s)	238
BslI	CCNNNNNNNGG	1 cut(s)	136
BsmAI	GTCTC	3 cut(s)	220, 327, 404
BsnI	GGCC	1 cut(s)	10
BsoBI	CYCGRG	1 cut(s)	53
Bsp1286I	GDGCHC	1 cut(s)	29
Bsp143I	GATC	1 cut(s)	433
BspACI	CCGC	5 cut(s)	175, 274, 277, 396, 399
BspANI	GGCC	1 cut(s)	10
BspCNI	CTCAG	2 cut(s)	216, 352
BspLI	GGNNCC	3 cut(s)	264, 272, 423
BspT107I	GGYRCC	2 cut(s)	270, 421
BsrI	ACTGG	2 cut(s)	11, 192
BssECI	CCNNGG	4 cut(s)	54, 236, 266, 324
BssMI	GATC	1 cut(s)	433
Bst2UI	CCWGG	1 cut(s)	325
Bst4CI	ACNGT	1 cut(s)	392
Bst6I	CTCTTC	1 cut(s)	444
BstDEI	CTNAG	3 cut(s)	12, 203, 360
BstKTI	GATC	1 cut(s)	436
BstMAI	GTCTC	3 cut(s)	220, 327, 404
BstMBI	GATC	1 cut(s)	433
BstMCI	CGRYCG	1 cut(s)	112
BstNI	CCWGG	1 cut(s)	325
BstSCI	CCNGG	2 cut(s)	236, 323
BsuRI	GGCC	1 cut(s)	10
BtsIMutI	CAGTG	3 cut(s)	185, 357, 397
Cfr13I	GGNCC	2 cut(s)	262, 321
CviAII	CATG	1 cut(s)	337
CviJI	RGCY	9 cut(s)	10, 16, 27, 95, 117, 123, 129, 202, 233
CviKI_1	RGCY	9 cut(s)	10, 16, 27, 95, 117, 123, 129, 202, 233
DdeI	CTNAG	3 cut(s)	12, 203, 360
DpnI	GATC	1 cut(s)	435
DpnII	GATC	1 cut(s)	433
Eam1104I	CTCTTC	1 cut(s)	444
EarI	CTCTTC	1 cut(s)	444
Ecl136II	GAGCTC	1 cut(s)	27
Eco24I	GRGCYC	1 cut(s)	29
Eco47I	GGWCC	2 cut(s)	262, 321
Eco53kI	GAGCTC	1 cut(s)	27
Eco88I	CYCGRG	1 cut(s)	53
EcoICRI	GAGCTC	1 cut(s)	27
EcoRII	CCWGG	1 cut(s)	323
EcoT38I	GRGCYC	1 cut(s)	29
FaeI	CATG	1 cut(s)	340
FaiI	YATR	2 cut(s)	338, 350
FatI	CATG	1 cut(s)	336
Fnu4HI	GCNGC	4 cut(s)	176, 277, 396, 399
FriOI	GRGCYC	1 cut(s)	29
Fsp4HI	GCNGC	4 cut(s)	176, 277, 396, 399
GluI	GCNGC	4 cut(s)	176, 277, 396, 399
GsuI	CTGGAG	1 cut(s)	209
HaeIII	GGCC	1 cut(s)	10
HapII	CCGG	1 cut(s)	238
Hin1II	CATG	1 cut(s)	340
HinfI	GANTC	4 cut(s)	31, 248, 428, 442
HpaII	CCGG	1 cut(s)	238
HphI	GGTGA	2 cut(s)	100, 340
Hpy188I	TCNGA	2 cut(s)	409, 433
Hpy188III	TCNNGA	5 cut(s)	107, 205, 260, 319, 446
HpyCH4III	ACNGT	1 cut(s)	392
HpyF3I	CTNAG	3 cut(s)	12, 203, 360
Hsp92II	CATG	1 cut(s)	340
Kzo9I	GATC	1 cut(s)	433
LmnI	GCTCC	2 cut(s)	207, 364
LweI	GCATC	1 cut(s)	376
MaeIII	GTNAC	1 cut(s)	97
MalI	GATC	1 cut(s)	435
MboI	GATC	1 cut(s)	433
MboII	GAAGA	3 cut(s)	26, 257, 461
MhlI	GDGCHC	1 cut(s)	29
MluCI	AATT	5 cut(s)	18, 67, 77, 102, 414
MnlI	CCTC	6 cut(s)	49, 84, 130, 207, 276, 355
MslI	CAYNNNNRTG	1 cut(s)	347
MspA1I	CMGCKG	1 cut(s)	279
MspI	CCGG	1 cut(s)	238
MspR9I	CCNGG	2 cut(s)	238, 325
MvaI	CCWGG	1 cut(s)	325
NciI	CCSGG	1 cut(s)	238
NdeII	GATC	1 cut(s)	433
NlaIII	CATG	1 cut(s)	340
NlaIV	GGNNCC	3 cut(s)	264, 272, 423
NmeAIII	GCCGAG	1 cut(s)	247
PfeI	GAWTC	4 cut(s)	31, 248, 428, 442
PkrI	GCNGC	4 cut(s)	177, 278, 397, 400
Psp124BI	GAGCTC	1 cut(s)	29
Psp6I	CCWGG	1 cut(s)	323
PspGI	CCWGG	1 cut(s)	323
PspN4I	GGNNCC	3 cut(s)	264, 272, 423
PspPI	GGNCC	2 cut(s)	262, 321
RseI	CAYNNNNRTG	1 cut(s)	347
SacI	GAGCTC	1 cut(s)	29
SatI	GCNGC	4 cut(s)	176, 277, 396, 399
Sau3AI	GATC	1 cut(s)	433
Sau96I	GGNCC	2 cut(s)	262, 321
ScrFI	CCNGG	2 cut(s)	238, 325
SduI	GDGCHC	1 cut(s)	29
SetI	ASST	2 cut(s)	29, 204
SfaNI	GCATC	1 cut(s)	376
SinI	GGWCC	2 cut(s)	262, 321
SmiMI	CAYNNNNRTG	1 cut(s)	347
Sse9I	AATT	5 cut(s)	18, 67, 77, 102, 414
SsiI	CCGC	5 cut(s)	175, 274, 277, 396, 399
SstI	GAGCTC	1 cut(s)	29
StyD4I	CCNGG	2 cut(s)	236, 323
TaaI	ACNGT	1 cut(s)	392
TaqI	TCGA	1 cut(s)	29
TaqII	GACCGA	1 cut(s)	126
TasI	AATT	5 cut(s)	18, 67, 77, 102, 414
TauI	GCSGC	4 cut(s)	178, 279, 398, 401
TfiI	GAWTC	4 cut(s)	31, 248, 428, 442
TscAI	CASTG	3 cut(s)	192, 364, 397
TspDTI	ATGAA	2 cut(s)	17, 365
TspRI	CASTG	3 cut(s)	192, 364, 397
VpaK11BI	GGWCC	2 cut(s)	262, 321

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.