MD09G1092600.v1.1

Formiminotransferase domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0001919
Physical Location & Seq
Reverse (-)
6789351 .. 6790082
732 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1092600.v1.1.491

Sequence Viewer

Length: 423 bp
ATGGCGGATGACATCTTCGGCGAAGATTTTCTGAATTTGGAAGCGACCCACCAAAAGGAAGGTTTCGAGGAAGGCTACAGAGACGGCTTGGTCGCTGGAAAGGAGGAGGCGAAGCCGACGGGTGTCAAAACCGGGTTCGAGGTGGGCGAGGAGCTCGGGTTCTACAGGGGATGCGTGGATGTTTGGAACTCCGCGATCCGGGTCGACCCAACCCGGTTCACGCACCGGGTACAGAAGGCGGTGAGGCAGATGGAGGAGATGATTGAGAAGTACCCGATCATGGAACCGGAGGACGAGAGCGTCGGGGATGTGATGGAGGCTCTGAGGTTGAAGTTCCGGGCGGTTTGTGCTTCGTTGGGTGTGAAATTGGAGTATAAGGGGTACCCAAAAGGTGCTTCTGAGGCTACGGAGACGTCATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FTCD_N Yae1_N

Protein Analysis

141

Amino Acids

15.74

Weight (kDa)

4.75

Isoelectric Point (pI)

24.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Yae1_N PF09811 21 - 59 1.8e-08 Essential protein Yae1, N terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 89, 299
AatII GACGTC 1 cut(s) 416
Acc65I GGTACC 1 cut(s) 381
AccB1I GGYRCC 1 cut(s) 381
AccI GTMKAC 1 cut(s) 204
AccII CGCG 1 cut(s) 194
AciI CCGC 4 cut(s) 5, 192, 239, 341
AclWI GGATC 1 cut(s) 190
AcsI RAATTY 1 cut(s) 34
AcyI GRCGYC 1 cut(s) 413
AfaI GTAC 3 cut(s) 231, 272, 383
AfiI CCNNNNNNNGG 3 cut(s) 55, 198, 280
AgsI TTSAA 1 cut(s) 331
AjuI GAANNNNNNNTTGG 2 cut(s) 379, 411
AloI GAACNNNNNNTCC 2 cut(s) 143, 175
AluBI AGCT 1 cut(s) 154
AluI AGCT 1 cut(s) 154
Alw21I GWGCWC 1 cut(s) 156
Alw26I GTCTC 2 cut(s) 75, 404
AlwI GGATC 1 cut(s) 190
Ama87I CYCGRG 1 cut(s) 155
ApoI RAATTY 1 cut(s) 34
Asp700I GAANNNNTTC 1 cut(s) 27
Asp718I GGTACC 1 cut(s) 381
AsuC2I CCSGG 5 cut(s) 133, 200, 214, 227, 338
AsuHPI GGTGA 1 cut(s) 253
AvaI CYCGRG 1 cut(s) 155
BanI GGYRCC 1 cut(s) 381
BanII GRGCYC 1 cut(s) 156
Bbv12I GWGCWC 1 cut(s) 156
BccI CCATC 2 cut(s) 244, 307
BceAI ACGGC 1 cut(s) 100
BcnI CCSGG 5 cut(s) 133, 200, 214, 227, 338
BcoDI GTCTC 2 cut(s) 75, 404
BfmI CTRYAG 2 cut(s) 76, 163
Bme1390I CCNGG 5 cut(s) 133, 200, 214, 227, 338
BmeT110I CYCGRG 1 cut(s) 155
BmiI GGNNCC 2 cut(s) 285, 383
BmrFI CCNGG 5 cut(s) 133, 200, 214, 227, 338
BmsI GCATC 1 cut(s) 161
BoxI GACNNNNGTC 1 cut(s) 122
BpuMI CCSGG 5 cut(s) 133, 200, 214, 227, 338
BsaHI GRCGYC 1 cut(s) 413
BsaWI WCCGGW 1 cut(s) 286
BsaXI ACNNNNNCTCC 2 cut(s) 143, 173
Bsc4I CCNNNNNNNGG 3 cut(s) 55, 198, 280
BseGI GGATG 4 cut(s) 13, 176, 184, 313
BseLI CCNNNNNNNGG 3 cut(s) 55, 198, 280
BseMII CTCAG 2 cut(s) 314, 390
BseRI GAGGAG 3 cut(s) 119, 164, 269
Bsh1236I CGCG 1 cut(s) 194
BshNI GGYRCC 1 cut(s) 381
BsiHKAI GWGCWC 1 cut(s) 156
BsiHKCI CYCGRG 1 cut(s) 155
BsiSI CCGG 6 cut(s) 132, 199, 214, 226, 287, 337
BslI CCNNNNNNNGG 3 cut(s) 55, 198, 280
BsmAI GTCTC 2 cut(s) 75, 404
BsmBI CGTCTC 2 cut(s) 75, 404
BsoBI CYCGRG 1 cut(s) 155
Bsp1286I GDGCHC 1 cut(s) 156
Bsp143I GATC 2 cut(s) 195, 276
BspACI CCGC 4 cut(s) 5, 192, 239, 341
BspCNI CTCAG 2 cut(s) 315, 391
BspFNI CGCG 1 cut(s) 194
BspLI GGNNCC 2 cut(s) 285, 383
BspPI GGATC 1 cut(s) 190
BspT107I GGYRCC 1 cut(s) 381
BssMI GATC 2 cut(s) 195, 276
BssNI GRCGYC 1 cut(s) 413
BstACI GRCGYC 1 cut(s) 413
BstDEI CTNAG 2 cut(s) 323, 399
BstF5I GGATG 4 cut(s) 13, 176, 184, 313
BstFNI CGCG 1 cut(s) 194
BstKTI GATC 2 cut(s) 198, 279
BstMAI GTCTC 2 cut(s) 75, 404
BstMBI GATC 2 cut(s) 195, 276
BstMWI GCNNNNNNNGC 2 cut(s) 347, 401
BstPAI GACNNNNGTC 1 cut(s) 122
BstSCI CCNGG 5 cut(s) 131, 198, 212, 225, 336
BstSFI CTRYAG 2 cut(s) 76, 163
BstUI CGCG 1 cut(s) 194
BtsCI GGATG 4 cut(s) 13, 176, 184, 313
CseI GACGC 1 cut(s) 289
Csp6I GTAC 3 cut(s) 230, 271, 382
CviAII CATG 1 cut(s) 280
CviJI RGCY 6 cut(s) 75, 87, 115, 154, 320, 404
CviKI_1 RGCY 6 cut(s) 75, 87, 115, 154, 320, 404
CviQI GTAC 3 cut(s) 230, 271, 382
DdeI CTNAG 2 cut(s) 323, 399
DpnI GATC 2 cut(s) 197, 278
DpnII GATC 2 cut(s) 195, 276
DrdI GACNNNNNNGTC 2 cut(s) 89, 299
DseDI GACNNNNNNGTC 2 cut(s) 89, 299
EciI GGCGGA 1 cut(s) 20
Ecl136II GAGCTC 1 cut(s) 154
Eco24I GRGCYC 1 cut(s) 156
Eco53kI GAGCTC 1 cut(s) 154
Eco88I CYCGRG 1 cut(s) 155
EcoICRI GAGCTC 1 cut(s) 154
EcoT38I GRGCYC 1 cut(s) 156
Esp3I CGTCTC 2 cut(s) 75, 404
FaeI CATG 1 cut(s) 283
FaiI YATR 2 cut(s) 281, 375
FatI CATG 1 cut(s) 279
FblI GTMKAC 1 cut(s) 204
FokI GGATG 4 cut(s) 20, 183, 191, 320
FriOI GRGCYC 1 cut(s) 156
HapII CCGG 6 cut(s) 132, 199, 214, 226, 287, 337
HgaI GACGC 1 cut(s) 289
Hin1I GRCGYC 1 cut(s) 413
Hin1II CATG 1 cut(s) 283
HincII GTYRAC 1 cut(s) 205
HindII GTYRAC 1 cut(s) 205
HpaII CCGG 6 cut(s) 132, 199, 214, 226, 287, 337
HphI GGTGA 1 cut(s) 253
Hpy166II GTNNAC 2 cut(s) 205, 219
Hpy188I TCNGA 3 cut(s) 33, 324, 400
Hpy8I GTNNAC 2 cut(s) 205, 219
Hpy99I CGWCG 2 cut(s) 121, 305
HpyAV CCTTC 3 cut(s) 53, 65, 229
HpyCH4IV ACGT 1 cut(s) 413
HpyF10VI GCNNNNNNNGC 2 cut(s) 347, 401
HpyF3I CTNAG 2 cut(s) 323, 399
HpySE526I ACGT 1 cut(s) 413
Hsp92I GRCGYC 1 cut(s) 413
Hsp92II CATG 1 cut(s) 283
KpnI GGTACC 1 cut(s) 385
Kzo9I GATC 2 cut(s) 195, 276
LmnI GCTCC 1 cut(s) 151
LpnPI CCDG 8 cut(s) 81, 145, 151, 212, 227, 239, 300, 350
LweI GCATC 1 cut(s) 161
MaeII ACGT 1 cut(s) 413
MalI GATC 2 cut(s) 197, 278
MboI GATC 2 cut(s) 195, 276
MboII GAAGA 2 cut(s) 7, 35
MhlI GDGCHC 1 cut(s) 156
MluCI AATT 2 cut(s) 34, 365
MroXI GAANNNNTTC 1 cut(s) 27
MspI CCGG 6 cut(s) 132, 199, 214, 226, 287, 337
MspR9I CCNGG 5 cut(s) 133, 200, 214, 227, 338
MvnI CGCG 1 cut(s) 194
MwoI GCNNNNNNNGC 2 cut(s) 347, 401
NciI CCSGG 5 cut(s) 133, 200, 214, 227, 338
NdeII GATC 2 cut(s) 195, 276
NlaIII CATG 1 cut(s) 283
NlaIV GGNNCC 2 cut(s) 285, 383
PcsI WCGNNNNNNNCGW 1 cut(s) 144
PdmI GAANNNNTTC 1 cut(s) 27
PshAI GACNNNNGTC 1 cut(s) 122
Psp124BI GAGCTC 1 cut(s) 156
PspN4I GGNNCC 2 cut(s) 285, 383
RsaI GTAC 3 cut(s) 231, 272, 383
RsaNI GTAC 3 cut(s) 230, 271, 382
SacI GAGCTC 1 cut(s) 156
SalI GTCGAC 1 cut(s) 203
Sau3AI GATC 2 cut(s) 195, 276
ScrFI CCNGG 5 cut(s) 133, 200, 214, 227, 338
SduI GDGCHC 1 cut(s) 156
SetI ASST 6 cut(s) 64, 144, 156, 329, 394, 416
SfaNI GCATC 1 cut(s) 161
SfcI CTRYAG 2 cut(s) 76, 163
Sse9I AATT 2 cut(s) 34, 365
SsiI CCGC 4 cut(s) 5, 192, 239, 341
SstI GAGCTC 1 cut(s) 156
StyD4I CCNGG 5 cut(s) 131, 198, 212, 225, 336
TaiI ACGT 1 cut(s) 416
TaqI TCGA 3 cut(s) 66, 138, 204
TasI AATT 2 cut(s) 34, 365
TspGWI ACGGA 1 cut(s) 422
XapI RAATTY 1 cut(s) 34
XmiI GTMKAC 1 cut(s) 204
XmnI GAANNNNTTC 1 cut(s) 27
ZraI GACGTC 1 cut(s) 414
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.