Rroxscaffold_6G00426040

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0001919
Physical Location & Seq
Reverse (-)
46934835 .. 46935470
636 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00426040.1

Sequence Viewer

Length: 216 bp
ATGTGGAGAGACAAGCCCCCCGGTTTGAAGATTCTGTGGGTCTGGACCCTCGGCACCGCCGCTGTTTTGGTTGCCAATGTGGTCAGGACCAGGGTGAGAGACATGGACACCCTTATGAACAACACTGAGGAGCATCAACAGGCGGCCGCCGCCGACACGGAGACACTTTTGTTGCCTGAATCCGATCAAGTGATTCGGGAAGAGAAATCCTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

71

Amino Acids

8.05

Weight (kDa)

4.94

Isoelectric Point (pI)

28.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 53
AciI CCGC 5 cut(s) 57, 60, 143, 147, 150
AcoI YGGCCR 1 cut(s) 144
AgsI TTSAA 1 cut(s) 28
AjnI CCWGG 1 cut(s) 89
Alw26I GTCTC 3 cut(s) 3, 93, 155
AoxI GGCC 1 cut(s) 144
AspS9I GGNCC 2 cut(s) 45, 87
AsuC2I CCSGG 1 cut(s) 21
AsuHPI GGTGA 1 cut(s) 106
AvaII GGWCC 2 cut(s) 45, 87
BanI GGYRCC 1 cut(s) 53
BciT130I CCWGG 1 cut(s) 91
BcnI CCSGG 1 cut(s) 21
BcoDI GTCTC 3 cut(s) 3, 93, 155
BisI GCNGC 4 cut(s) 60, 144, 147, 150
BlsI GCNGC 4 cut(s) 61, 145, 148, 151
Bme1390I CCNGG 2 cut(s) 21, 91
Bme18I GGWCC 2 cut(s) 45, 87
BmgT120I GGNCC 2 cut(s) 45, 87
BmiI GGNNCC 2 cut(s) 47, 55
BmrFI CCNGG 2 cut(s) 21, 91
BmsI GCATC 1 cut(s) 142
BplI GAGNNNNNCTC 1 cut(s) 194
BpuMI CCSGG 1 cut(s) 21
BsaJI CCNNGG 3 cut(s) 19, 49, 90
BseBI CCWGG 1 cut(s) 91
BseDI CCNNGG 3 cut(s) 19, 49, 90
BseMII CTCAG 1 cut(s) 117
BseRI GAGGAG 1 cut(s) 143
BseX3I CGGCCG 1 cut(s) 144
Bsh1285I CGRYCG 1 cut(s) 147
BshFI GGCC 1 cut(s) 146
BshNI GGYRCC 1 cut(s) 53
BsiEI CGRYCG 1 cut(s) 147
BsiSI CCGG 1 cut(s) 21
BsmAI GTCTC 3 cut(s) 3, 93, 155
BsnI GGCC 1 cut(s) 146
Bsp143I GATC 1 cut(s) 184
BspACI CCGC 5 cut(s) 57, 60, 143, 147, 150
BspANI GGCC 1 cut(s) 146
BspCNI CTCAG 1 cut(s) 118
BspLI GGNNCC 2 cut(s) 47, 55
BspT107I GGYRCC 1 cut(s) 53
BssECI CCNNGG 3 cut(s) 19, 49, 90
BssMI GATC 1 cut(s) 184
Bst2UI CCWGG 1 cut(s) 91
Bst6I CTCTTC 1 cut(s) 195
BstDEI CTNAG 1 cut(s) 126
BstKTI GATC 1 cut(s) 187
BstMAI GTCTC 3 cut(s) 3, 93, 155
BstMBI GATC 1 cut(s) 184
BstMCI CGRYCG 1 cut(s) 147
BstMWI GCNNNNNNNGC 1 cut(s) 149
BstNI CCWGG 1 cut(s) 91
BstSCI CCNGG 2 cut(s) 19, 89
BstZI CGGCCG 1 cut(s) 144
BsuRI GGCC 1 cut(s) 146
BtsIMutI CAGTG 1 cut(s) 123
CciNI GCGGCCGC 1 cut(s) 144
Cfr13I GGNCC 2 cut(s) 45, 87
CviAII CATG 1 cut(s) 103
CviJI RGCY 2 cut(s) 16, 146
CviKI_1 RGCY 2 cut(s) 16, 146
DdeI CTNAG 1 cut(s) 126
DpnI GATC 1 cut(s) 186
DpnII GATC 1 cut(s) 184
EaeI YGGCCR 1 cut(s) 144
EagI CGGCCG 1 cut(s) 144
Eam1104I CTCTTC 1 cut(s) 195
EarI CTCTTC 1 cut(s) 195
EclXI CGGCCG 1 cut(s) 144
Eco47I GGWCC 2 cut(s) 45, 87
Eco52I CGGCCG 1 cut(s) 144
EcoRII CCWGG 1 cut(s) 89
FaeI CATG 1 cut(s) 106
FaiI YATR 2 cut(s) 104, 116
FatI CATG 1 cut(s) 102
Fnu4HI GCNGC 4 cut(s) 60, 144, 147, 150
Fsp4HI GCNGC 4 cut(s) 60, 144, 147, 150
GluI GCNGC 4 cut(s) 60, 144, 147, 150
HaeIII GGCC 1 cut(s) 146
HapII CCGG 1 cut(s) 21
Hin1II CATG 1 cut(s) 106
HinfI GANTC 3 cut(s) 31, 179, 193
HpaII CCGG 1 cut(s) 21
HphI GGTGA 1 cut(s) 106
Hpy188I TCNGA 1 cut(s) 184
Hpy188III TCNNGA 3 cut(s) 43, 85, 197
HpyF10VI GCNNNNNNNGC 1 cut(s) 149
HpyF3I CTNAG 1 cut(s) 126
Hsp92II CATG 1 cut(s) 106
Kzo9I GATC 1 cut(s) 184
LmnI GCTCC 1 cut(s) 130
LpnPI CCDG 7 cut(s) 28, 34, 70, 76, 103, 125, 189
LweI GCATC 1 cut(s) 142
MalI GATC 1 cut(s) 186
MboI GATC 1 cut(s) 184
MboII GAAGA 2 cut(s) 40, 212
MnlI CCTC 2 cut(s) 59, 121
MseI TTAA 1 cut(s) 214
MslI CAYNNNNRTG 1 cut(s) 113
MspA1I CMGCKG 1 cut(s) 62
MspI CCGG 1 cut(s) 21
MspR9I CCNGG 2 cut(s) 21, 91
MvaI CCWGG 1 cut(s) 91
MwoI GCNNNNNNNGC 1 cut(s) 149
NciI CCSGG 1 cut(s) 21
NdeII GATC 1 cut(s) 184
NlaIII CATG 1 cut(s) 106
NlaIV GGNNCC 2 cut(s) 47, 55
NmeAIII GCCGAG 1 cut(s) 30
NotI GCGGCCGC 1 cut(s) 144
PfeI GAWTC 3 cut(s) 31, 179, 193
PkrI GCNGC 4 cut(s) 61, 145, 148, 151
Psp6I CCWGG 1 cut(s) 89
PspGI CCWGG 1 cut(s) 89
PspN4I GGNNCC 2 cut(s) 47, 55
PspPI GGNCC 2 cut(s) 45, 87
RseI CAYNNNNRTG 1 cut(s) 113
SaqAI TTAA 1 cut(s) 214
SatI GCNGC 4 cut(s) 60, 144, 147, 150
Sau3AI GATC 1 cut(s) 184
Sau96I GGNCC 2 cut(s) 45, 87
ScrFI CCNGG 2 cut(s) 21, 91
SfaNI GCATC 1 cut(s) 142
SinI GGWCC 2 cut(s) 45, 87
SmiMI CAYNNNNRTG 1 cut(s) 113
SsiI CCGC 5 cut(s) 57, 60, 143, 147, 150
StyD4I CCNGG 2 cut(s) 19, 89
TauI GCSGC 4 cut(s) 62, 146, 149, 152
TfiI GAWTC 3 cut(s) 31, 179, 193
Tru1I TTAA 1 cut(s) 214
Tru9I TTAA 1 cut(s) 214
TscAI CASTG 1 cut(s) 130
TspDTI ATGAA 1 cut(s) 131
TspGWI ACGGA 1 cut(s) 173
TspRI CASTG 1 cut(s) 130
VpaK11BI GGWCC 2 cut(s) 45, 87
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.