Prupe.6G361800_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0001919
Physical Location & Seq
Forward (+)
30472894 .. 30475849
2956 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G361800.1

Sequence Viewer

Length: 234 bp
ATGGCAAGAGAGTTGAGCCCTGGCTTAAAGATTCTCTGGGTCTGGACCCTTGGCACCGCCGCTGTACTGGTTACAAGTGTGGTGAGGACGAGGGTGAGAGACATGGAGAACCTTATGAATGCTGAGCAGCAGCAGCCACAACAACAACAAGACACCACTGCCACCGACACAGATACACTCTTGGTGGACACTTCGCCTCAGTCCTCTGAACTGATTCGAGAAGAGAAACCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

78

Amino Acids

8.67

Weight (kDa)

4.54

Isoelectric Point (pI)

50.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 53
AciI CCGC 2 cut(s) 57, 60
AfaI GTAC 1 cut(s) 66
AjnI CCWGG 1 cut(s) 19
Alw26I GTCTC 1 cut(s) 93
ApeKI GCWGC 3 cut(s) 127, 130, 133
Asp700I GAANNNNTTC 1 cut(s) 213
AspS9I GGNCC 1 cut(s) 45
AsuHPI GGTGA 2 cut(s) 94, 106
AvaII GGWCC 1 cut(s) 45
BanI GGYRCC 1 cut(s) 53
BanII GRGCYC 1 cut(s) 20
BbvI GCAGC 3 cut(s) 139, 142, 145
BciT130I CCWGG 1 cut(s) 21
BcoDI GTCTC 1 cut(s) 93
BisI GCNGC 4 cut(s) 60, 128, 131, 134
BlpI GCTNAGC 1 cut(s) 123
BlsI GCNGC 4 cut(s) 61, 129, 132, 135
Bme1390I CCNGG 1 cut(s) 21
Bme18I GGWCC 1 cut(s) 45
BmgT120I GGNCC 1 cut(s) 45
BmiI GGNNCC 2 cut(s) 47, 55
BmrFI CCNGG 1 cut(s) 21
Bpu1102I GCTNAGC 1 cut(s) 123
BsaJI CCNNGG 2 cut(s) 19, 49
Bse1I ACTGG 1 cut(s) 72
BseBI CCWGG 1 cut(s) 21
BseDI CCNNGG 2 cut(s) 19, 49
BseMII CTCAG 2 cut(s) 114, 212
BseNI ACTGG 1 cut(s) 72
BseXI GCAGC 3 cut(s) 139, 142, 145
BshNI GGYRCC 1 cut(s) 53
BsmAI GTCTC 1 cut(s) 93
BsmI GAATGC 1 cut(s) 124
Bsp1286I GDGCHC 1 cut(s) 20
Bsp1720I GCTNAGC 1 cut(s) 123
BspACI CCGC 2 cut(s) 57, 60
BspCNI CTCAG 2 cut(s) 115, 211
BspLI GGNNCC 2 cut(s) 47, 55
BspT107I GGYRCC 1 cut(s) 53
BsrI ACTGG 1 cut(s) 72
BssECI CCNNGG 2 cut(s) 19, 49
BssT1I CCWWGG 1 cut(s) 49
Bst2UI CCWGG 1 cut(s) 21
Bst6I CTCTTC 1 cut(s) 216
BstDEI CTNAG 2 cut(s) 123, 198
BstMAI GTCTC 1 cut(s) 93
BstMWI GCNNNNNNNGC 1 cut(s) 133
BstNI CCWGG 1 cut(s) 21
BstSCI CCNGG 1 cut(s) 19
BstV1I GCAGC 3 cut(s) 139, 142, 145
BtsI GCAGTG 1 cut(s) 156
BtsIMutI CAGTG 1 cut(s) 156
Cfr13I GGNCC 1 cut(s) 45
Csp6I GTAC 1 cut(s) 65
CviAII CATG 1 cut(s) 103
CviJI RGCY 3 cut(s) 18, 24, 136
CviKI_1 RGCY 3 cut(s) 18, 24, 136
CviQI GTAC 1 cut(s) 65
DdeI CTNAG 2 cut(s) 123, 198
Eam1104I CTCTTC 1 cut(s) 216
EarI CTCTTC 1 cut(s) 216
Eco130I CCWWGG 1 cut(s) 49
Eco24I GRGCYC 1 cut(s) 20
Eco47I GGWCC 1 cut(s) 45
EcoRII CCWGG 1 cut(s) 19
EcoT14I CCWWGG 1 cut(s) 49
EcoT38I GRGCYC 1 cut(s) 20
ErhI CCWWGG 1 cut(s) 49
FaeI CATG 1 cut(s) 106
FaiI YATR 3 cut(s) 104, 116, 232
FatI CATG 1 cut(s) 102
Fnu4HI GCNGC 4 cut(s) 60, 128, 131, 134
FriOI GRGCYC 1 cut(s) 20
Fsp4HI GCNGC 4 cut(s) 60, 128, 131, 134
GluI GCNGC 4 cut(s) 60, 128, 131, 134
Hin1II CATG 1 cut(s) 106
HinfI GANTC 2 cut(s) 31, 214
HphI GGTGA 2 cut(s) 94, 106
Hpy166II GTNNAC 1 cut(s) 187
Hpy188I TCNGA 1 cut(s) 208
Hpy188III TCNNGA 2 cut(s) 43, 218
Hpy8I GTNNAC 1 cut(s) 187
HpyF10VI GCNNNNNNNGC 1 cut(s) 133
HpyF3I CTNAG 2 cut(s) 123, 198
Hsp92II CATG 1 cut(s) 106
LpnPI CCDG 5 cut(s) 6, 22, 28, 33, 53
Lsp1109I GCAGC 3 cut(s) 139, 142, 145
MaeIII GTNAC 1 cut(s) 70
MboII GAAGA 1 cut(s) 233
MhlI GDGCHC 1 cut(s) 20
MnlI CCTC 4 cut(s) 78, 84, 207, 214
MroXI GAANNNNTTC 1 cut(s) 213
MseI TTAA 1 cut(s) 26
MspA1I CMGCKG 1 cut(s) 62
MspR9I CCNGG 1 cut(s) 21
Mva1269I GAATGC 1 cut(s) 124
MvaI CCWGG 1 cut(s) 21
MwoI GCNNNNNNNGC 1 cut(s) 133
NlaIII CATG 1 cut(s) 106
NlaIV GGNNCC 2 cut(s) 47, 55
PctI GAATGC 1 cut(s) 124
PdmI GAANNNNTTC 1 cut(s) 213
PfeI GAWTC 2 cut(s) 31, 214
PkrI GCNGC 4 cut(s) 61, 129, 132, 135
Psp6I CCWGG 1 cut(s) 19
PspGI CCWGG 1 cut(s) 19
PspN4I GGNNCC 2 cut(s) 47, 55
PspPI GGNCC 1 cut(s) 45
RsaI GTAC 1 cut(s) 66
RsaNI GTAC 1 cut(s) 65
SaqAI TTAA 1 cut(s) 26
SatI GCNGC 4 cut(s) 60, 128, 131, 134
Sau96I GGNCC 1 cut(s) 45
ScrFI CCNGG 1 cut(s) 21
SduI GDGCHC 1 cut(s) 20
SetI ASST 1 cut(s) 114
SinI GGWCC 1 cut(s) 45
SsiI CCGC 2 cut(s) 57, 60
StyD4I CCNGG 1 cut(s) 19
StyI CCWWGG 1 cut(s) 49
TaqI TCGA 1 cut(s) 217
TatI WGTACW 1 cut(s) 64
TauI GCSGC 1 cut(s) 62
TfiI GAWTC 2 cut(s) 31, 214
Tru1I TTAA 1 cut(s) 26
Tru9I TTAA 1 cut(s) 26
TscAI CASTG 1 cut(s) 163
TseI GCWGC 3 cut(s) 127, 130, 133
TspDTI ATGAA 1 cut(s) 131
TspRI CASTG 1 cut(s) 163
VpaK11BI GGWCC 1 cut(s) 45
XmnI GAANNNNTTC 1 cut(s) 213
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.