Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000018.1

Orthogroup ID

OG0001919

Physical Location & Seq

Genomic Coordinates Reverse (-)

373698 .. 374117

Gene Structure 420 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000018.1_g000076.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

atggacgacatattcggagagtctctgaacttcgaagagatccacatcaagcaaggtttcgacgaaggccacaaagatggcctgatcgctggaaaagaggaggccaggcaagtgggcctcaaggtgggcttcgaggtcggcgaggagctagggttctacaagggttgcgtggaggtatggaactctgcggtccgggttgacccaaccaggttctcgacccgggtccagaagggcgtgaagcagatggaggagttggtggagaggtacccagttatggaacccgagaatgagagcgtgcaggagataatggaggatttgaggttgaagtttaaggcggtttgtgcttctttgggtgtgaaattggagtaccaagggtacccgagagcttcatcttctggggctaaagatgttgcgttttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FTCD_N Yae1_N

Protein Analysis

139

Amino Acids

15.64

Weight (kDa)

4.87

Isoelectric Point (pI)

37.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001919)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06010
fragaria_vesca	FvH4_6g00460
malus_domestica	MD04G1245200.v1.1 MD09G1092600.v1.1 MD12G1086700.v1.1 MD17G1082700.v1.1
prunus_persica	Prupe.6G361800_v2.0.a1 Prupe.6G361800_v2.0.a1
pyrus_communis	pycom04g21590 pycom12g23890
rosa_chinensis	RchiOBHm_Chr2g0127151 RchiOBHm_Chr3g0447831
rosa_laevigata	RLG00000015762 RLG00000018977 RLG00000018978 RLG00000021317
rosa_multiflora	Rmu_sc0005601.1_g000003 Rmu_sc0021156.1_g000003 Rmu_sc0026966.1_g000003 Rmu_ssc0000018.1_g000076
rosa_roxburghii	Rroxscaffold_2G00154490 Rroxscaffold_6G00426040
rosa_rugosa	Rorug02G0277000 Rorug02G0277100 Rorug02G0277200 Rorug02G0494200 Rorug02G0606200 Rorug02G0606300 Rorug02G0606400
rosa_samantha	Rh2AG327600 Rh2AG327700 Rh2AG560300 Rh2BG337700 Rh2BG573600 Rh2CG314600 Rh2CG543900 Rh2DG354600 Rh2DG354800 Rh2DG583600 Rh3AG005600 Rh3BG005300 Rh3CG005500 Rh3DG005800
rosa_wichuraiana	Rw0G013430 Rw2G026580 Rw3G000420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	264, 375
AccB1I	GGYRCC	2 cut(s)	264, 375
AciI	CCGC	2 cut(s)	188, 335
AclWI	GGATC	1 cut(s)	34
AfaI	GTAC	3 cut(s)	266, 368, 377
AfiI	CCNNNNNNNGG	2 cut(s)	124, 274
AgsI	TTSAA	1 cut(s)	325
AjnI	CCWGG	2 cut(s)	104, 206
AloI	GAACNNNNNNTCC	2 cut(s)	137, 169
AluBI	AGCT	2 cut(s)	148, 386
AluI	AGCT	2 cut(s)	148, 386
Alw26I	GTCTC	1 cut(s)	27
AlwI	GGATC	1 cut(s)	34
Ama87I	CYCGRG	3 cut(s)	219, 281, 379
AoxI	GGCC	4 cut(s)	67, 79, 102, 115
ArsI	GACNNNNNNTTYG	1 cut(s)	28
Asp718I	GGTACC	2 cut(s)	264, 375
AspS9I	GGNCC	3 cut(s)	115, 190, 223
AsuC2I	CCSGG	3 cut(s)	194, 220, 221
AsuII	TTCGAA	1 cut(s)	33
AvaI	CYCGRG	3 cut(s)	219, 281, 379
AvaII	GGWCC	2 cut(s)	190, 223
BanI	GGYRCC	2 cut(s)	264, 375
BccI	CCATC	2 cut(s)	71, 238
BciT130I	CCWGG	2 cut(s)	106, 208
BcnI	CCSGG	3 cut(s)	194, 220, 221
BcoDI	GTCTC	1 cut(s)	27
BfaI	CTAG	1 cut(s)	149
Bme1390I	CCNGG	5 cut(s)	106, 194, 208, 220, 221
Bme18I	GGWCC	2 cut(s)	190, 223
BmeT110I	CYCGRG	3 cut(s)	219, 281, 379
BmgT120I	GGNCC	3 cut(s)	115, 190, 223
BmiI	GGNNCC	4 cut(s)	224, 266, 279, 377
BmrFI	CCNGG	5 cut(s)	106, 194, 208, 220, 221
BmrI	ACTGGG	1 cut(s)	263
BmuI	ACTGGG	1 cut(s)	263
BoxI	GACNNNNGTC	1 cut(s)	221
Bpu14I	TTCGAA	1 cut(s)	33
BpuEI	CTTGAG	1 cut(s)	104
BpuMI	CCSGG	3 cut(s)	194, 220, 221
BsaBI	GATNNNNATC	1 cut(s)	44
BsaJI	CCNNGG	2 cut(s)	219, 370
BsaXI	ACNNNNNCTCC	2 cut(s)	137, 167
Bsc4I	CCNNNNNNNGG	2 cut(s)	124, 274
Bse1I	ACTGG	1 cut(s)	269
Bse8I	GATNNNNATC	1 cut(s)	44
BseBI	CCWGG	2 cut(s)	106, 208
BseDI	CCNNGG	2 cut(s)	219, 370
BseJI	GATNNNNATC	1 cut(s)	44
BseLI	CCNNNNNNNGG	2 cut(s)	124, 274
BseNI	ACTGG	1 cut(s)	269
BseRI	GAGGAG	3 cut(s)	113, 158, 263
BsgI	GTGCAG	1 cut(s)	317
BshFI	GGCC	4 cut(s)	69, 81, 104, 117
BshNI	GGYRCC	2 cut(s)	264, 375
BsiHKCI	CYCGRG	3 cut(s)	219, 281, 379
BsiSI	CCGG	2 cut(s)	193, 220
BslI	CCNNNNNNNGG	2 cut(s)	124, 274
BsmAI	GTCTC	1 cut(s)	27
BsnI	GGCC	4 cut(s)	69, 81, 104, 117
BsoBI	CYCGRG	3 cut(s)	219, 281, 379
Bsp119I	TTCGAA	1 cut(s)	33
Bsp143I	GATC	2 cut(s)	39, 84
BspACI	CCGC	2 cut(s)	188, 335
BspANI	GGCC	4 cut(s)	69, 81, 104, 117
BspLI	GGNNCC	4 cut(s)	224, 266, 279, 377
BspPI	GGATC	1 cut(s)	34
BspT104I	TTCGAA	1 cut(s)	33
BspT107I	GGYRCC	2 cut(s)	264, 375
BsrI	ACTGG	1 cut(s)	269
BssECI	CCNNGG	2 cut(s)	219, 370
BssMI	GATC	2 cut(s)	39, 84
BssT1I	CCWWGG	1 cut(s)	370
Bst2UI	CCWGG	2 cut(s)	106, 208
Bst6I	CTCTTC	1 cut(s)	30
BstBI	TTCGAA	1 cut(s)	33
BstC8I	GCNNGC	1 cut(s)	296
BstKTI	GATC	2 cut(s)	42, 87
BstMAI	GTCTC	1 cut(s)	27
BstMBI	GATC	2 cut(s)	39, 84
BstMWI	GCNNNNNNNGC	1 cut(s)	341
BstNI	CCWGG	2 cut(s)	106, 208
BstPAI	GACNNNNGTC	1 cut(s)	221
BstSCI	CCNGG	5 cut(s)	104, 192, 206, 218, 219
BstX2I	RGATCY	1 cut(s)	39
BstXI	CCANNNNNNTGG	2 cut(s)	77, 112
BstYI	RGATCY	1 cut(s)	39
BsuRI	GGCC	4 cut(s)	69, 81, 104, 117
Cac8I	GCNNGC	1 cut(s)	296
Cfr13I	GGNCC	3 cut(s)	115, 190, 223
Cfr9I	CCCGGG	1 cut(s)	219
CpoI	CGGWCCG	1 cut(s)	190
CsiI	ACCWGGT	1 cut(s)	206
Csp6I	GTAC	3 cut(s)	265, 367, 376
CspI	CGGWCCG	1 cut(s)	190
CviJI	RGCY	8 cut(s)	69, 81, 104, 117, 129, 148, 386, 401
CviKI_1	RGCY	8 cut(s)	69, 81, 104, 117, 129, 148, 386, 401
CviQI	GTAC	3 cut(s)	265, 367, 376
DpnI	GATC	2 cut(s)	41, 86
DpnII	GATC	2 cut(s)	39, 84
Eam1104I	CTCTTC	1 cut(s)	30
EarI	CTCTTC	1 cut(s)	30
Eco130I	CCWWGG	1 cut(s)	370
Eco47I	GGWCC	2 cut(s)	190, 223
Eco88I	CYCGRG	3 cut(s)	219, 281, 379
EcoRII	CCWGG	2 cut(s)	104, 206
EcoT14I	CCWWGG	1 cut(s)	370
ErhI	CCWWGG	1 cut(s)	370
FaiI	YATR	3 cut(s)	11, 178, 275
FalI	AAGNNNNNCTT	2 cut(s)	113, 145
FspBI	CTAG	1 cut(s)	149
HaeIII	GGCC	4 cut(s)	69, 81, 104, 117
HapII	CCGG	2 cut(s)	193, 220
HincII	GTYRAC	1 cut(s)	199
HindII	GTYRAC	1 cut(s)	199
HinfI	GANTC	1 cut(s)	20
HpaII	CCGG	2 cut(s)	193, 220
Hpy166II	GTNNAC	1 cut(s)	199
Hpy188I	TCNGA	2 cut(s)	17, 27
Hpy188III	TCNNGA	2 cut(s)	214, 226
Hpy8I	GTNNAC	1 cut(s)	199
Hpy99I	CGWCG	1 cut(s)	65
HpyAV	CCTTC	2 cut(s)	59, 223
HpyCH4V	TGCA	1 cut(s)	298
HpyF10VI	GCNNNNNNNGC	1 cut(s)	341
KpnI	GGTACC	2 cut(s)	268, 379
Kzo9I	GATC	2 cut(s)	39, 84
LmnI	GCTCC	1 cut(s)	145
MabI	ACCWGGT	1 cut(s)	206
MaeI	CTAG	1 cut(s)	149
MalI	GATC	2 cut(s)	41, 86
MboI	GATC	2 cut(s)	39, 84
MboII	GAAGA	2 cut(s)	47, 384
MflI	RGATCY	1 cut(s)	39
MluCI	AATT	1 cut(s)	359
MlyI	GAGTC	1 cut(s)	29
MseI	TTAA	1 cut(s)	330
MslI	CAYNNNNRTG	1 cut(s)	75
MspI	CCGG	2 cut(s)	193, 220
MspR9I	CCNGG	5 cut(s)	106, 194, 208, 220, 221
MvaI	CCWGG	2 cut(s)	106, 208
MwoI	GCNNNNNNNGC	1 cut(s)	341
NciI	CCSGG	3 cut(s)	194, 220, 221
NdeII	GATC	2 cut(s)	39, 84
NlaIV	GGNNCC	4 cut(s)	224, 266, 279, 377
NspV	TTCGAA	1 cut(s)	33
PcsI	WCGNNNNNNNCGW	1 cut(s)	138
PleI	GAGTC	1 cut(s)	28
PpsI	GAGTC	1 cut(s)	28
PshAI	GACNNNNGTC	1 cut(s)	221
Psp6I	CCWGG	2 cut(s)	104, 206
PspGI	CCWGG	2 cut(s)	104, 206
PspN4I	GGNNCC	4 cut(s)	224, 266, 279, 377
PspPI	GGNCC	3 cut(s)	115, 190, 223
PsuI	RGATCY	1 cut(s)	39
RsaI	GTAC	3 cut(s)	266, 368, 377
RsaNI	GTAC	3 cut(s)	265, 367, 376
RseI	CAYNNNNRTG	1 cut(s)	75
Rsr2I	CGGWCCG	1 cut(s)	190
RsrII	CGGWCCG	1 cut(s)	190
SaqAI	TTAA	1 cut(s)	330
Sau3AI	GATC	2 cut(s)	39, 84
Sau96I	GGNCC	3 cut(s)	115, 190, 223
SchI	GAGTC	1 cut(s)	29
ScrFI	CCNGG	5 cut(s)	106, 194, 208, 220, 221
SetI	ASST	9 cut(s)	58, 126, 138, 150, 177, 212, 266, 323, 388
SexAI	ACCWGGT	1 cut(s)	206
SfuI	TTCGAA	1 cut(s)	33
SinI	GGWCC	2 cut(s)	190, 223
SmaI	CCCGGG	1 cut(s)	221
SmiMI	CAYNNNNRTG	1 cut(s)	75
SmlI	CTYRAG	1 cut(s)	119
SmoI	CTYRAG	1 cut(s)	119
Sse9I	AATT	1 cut(s)	359
SsiI	CCGC	2 cut(s)	188, 335
SspMI	CTAG	1 cut(s)	149
StyD4I	CCNGG	5 cut(s)	104, 192, 206, 218, 219
StyI	CCWWGG	1 cut(s)	370
TaqI	TCGA	4 cut(s)	33, 60, 132, 215
TasI	AATT	1 cut(s)	359
Tru1I	TTAA	1 cut(s)	330
Tru9I	TTAA	1 cut(s)	330
TspDTI	ATGAA	1 cut(s)	378
TspMI	CCCGGG	1 cut(s)	219
VpaK11BI	GGWCC	2 cut(s)	190, 223
XmaI	CCCGGG	1 cut(s)	219
XspI	CTAG	1 cut(s)	149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.