FvH4_6g00460

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0001919
Physical Location & Seq
Reverse (-)
300320 .. 301698
1379 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g00460.t1

Sequence Viewer

Length: 210 bp
ATGTGGAGAGACAAGCCACCCGGTTTGAAGATCCTGTGGGTCTGGACCCTCGGCACCGCCGCTGTTTTGGTTGCGAATGTGGTCAGGACCAGGATCACAGACATGGACAAAGTTATCAACAACACCCACGAGCATCAACAACACCAACTCAGCGCCGCCGACACCGAAACACTCCCGGAGCCTCACTCCGGTGAACTGAAACCCCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

70

Amino Acids

7.82

Weight (kDa)

6.38

Isoelectric Point (pI)

14.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 53
AciI CCGC 3 cut(s) 57, 60, 156
AclWI GGATC 2 cut(s) 25, 101
AfiI CCNNNNNNNGG 1 cut(s) 188
AgsI TTSAA 1 cut(s) 28
AjnI CCWGG 1 cut(s) 89
AleI CACNNNNGTG 1 cut(s) 189
Alw26I GTCTC 1 cut(s) 3
AlwI GGATC 2 cut(s) 25, 101
AspLEI GCGC 1 cut(s) 155
AspS9I GGNCC 2 cut(s) 45, 87
AsuC2I CCSGG 2 cut(s) 21, 176
AsuHPI GGTGA 1 cut(s) 203
AvaII GGWCC 2 cut(s) 45, 87
BanI GGYRCC 1 cut(s) 53
BauI CACGAG 1 cut(s) 128
BciT130I CCWGG 1 cut(s) 91
BcnI CCSGG 2 cut(s) 21, 176
BcoDI GTCTC 1 cut(s) 3
BfoI RGCGCY 1 cut(s) 156
BisI GCNGC 2 cut(s) 60, 156
BlsI GCNGC 2 cut(s) 61, 157
Bme1390I CCNGG 3 cut(s) 21, 91, 176
Bme18I GGWCC 2 cut(s) 45, 87
BmgT120I GGNCC 2 cut(s) 45, 87
BmiI GGNNCC 3 cut(s) 47, 55, 180
BmrFI CCNGG 3 cut(s) 21, 91, 176
BmrI ACTGGG 1 cut(s) 199
BmsI GCATC 1 cut(s) 142
BmuI ACTGGG 1 cut(s) 199
BplI GAGNNNNNCTC 2 cut(s) 170, 202
BpuMI CCSGG 2 cut(s) 21, 176
BsaJI CCNNGG 1 cut(s) 49
BsaWI WCCGGW 1 cut(s) 188
Bsc4I CCNNNNNNNGG 1 cut(s) 188
Bse1I ACTGG 1 cut(s) 205
BseBI CCWGG 1 cut(s) 91
BseDI CCNNGG 1 cut(s) 49
BseLI CCNNNNNNNGG 1 cut(s) 188
BseMII CTCAG 1 cut(s) 163
BseNI ACTGG 1 cut(s) 205
BshNI GGYRCC 1 cut(s) 53
BsiSI CCGG 3 cut(s) 21, 176, 189
BslI CCNNNNNNNGG 1 cut(s) 188
BsmAI GTCTC 1 cut(s) 3
Bsp143I GATC 2 cut(s) 30, 93
BspACI CCGC 3 cut(s) 57, 60, 156
BspCNI CTCAG 1 cut(s) 162
BspLI GGNNCC 3 cut(s) 47, 55, 180
BspPI GGATC 2 cut(s) 25, 101
BspT107I GGYRCC 1 cut(s) 53
BsrI ACTGG 1 cut(s) 205
BssECI CCNNGG 1 cut(s) 49
BssMI GATC 2 cut(s) 30, 93
BssSI CACGAG 1 cut(s) 128
Bst2BI CACGAG 1 cut(s) 128
Bst2UI CCWGG 1 cut(s) 91
BstDEI CTNAG 1 cut(s) 149
BstH2I RGCGCY 1 cut(s) 156
BstHHI GCGC 1 cut(s) 155
BstKTI GATC 2 cut(s) 33, 96
BstMAI GTCTC 1 cut(s) 3
BstMBI GATC 2 cut(s) 30, 93
BstNI CCWGG 1 cut(s) 91
BstSCI CCNGG 3 cut(s) 19, 89, 174
BstX2I RGATCY 1 cut(s) 30
BstYI RGATCY 1 cut(s) 30
CfoI GCGC 1 cut(s) 155
Cfr13I GGNCC 2 cut(s) 45, 87
CspCI CAANNNNNGTGG 2 cut(s) 6, 41
CviAII CATG 1 cut(s) 103
CviJI RGCY 2 cut(s) 16, 181
CviKI_1 RGCY 2 cut(s) 16, 181
DdeI CTNAG 1 cut(s) 149
DpnI GATC 2 cut(s) 32, 95
DpnII GATC 2 cut(s) 30, 93
Eco47I GGWCC 2 cut(s) 45, 87
EcoRII CCWGG 1 cut(s) 89
FaeI CATG 1 cut(s) 106
FaiI YATR 1 cut(s) 104
FatI CATG 1 cut(s) 102
Fnu4HI GCNGC 2 cut(s) 60, 156
Fsp4HI GCNGC 2 cut(s) 60, 156
GlaI GCGC 1 cut(s) 154
GluI GCNGC 2 cut(s) 60, 156
HaeII RGCGCY 1 cut(s) 156
HapII CCGG 3 cut(s) 21, 176, 189
HhaI GCGC 1 cut(s) 155
Hin1II CATG 1 cut(s) 106
Hin6I GCGC 1 cut(s) 153
HinP1I GCGC 1 cut(s) 153
HpaII CCGG 3 cut(s) 21, 176, 189
HphI GGTGA 1 cut(s) 203
Hpy166II GTNNAC 1 cut(s) 194
Hpy188III TCNNGA 2 cut(s) 43, 85
Hpy8I GTNNAC 1 cut(s) 194
HpyF3I CTNAG 1 cut(s) 149
Hsp92II CATG 1 cut(s) 106
HspAI GCGC 1 cut(s) 153
Kzo9I GATC 2 cut(s) 30, 93
LmnI GCTCC 1 cut(s) 178
LpnPI CCDG 8 cut(s) 28, 34, 47, 70, 76, 103, 189, 202
LweI GCATC 1 cut(s) 142
MalI GATC 2 cut(s) 32, 95
MboI GATC 2 cut(s) 30, 93
MboII GAAGA 1 cut(s) 40
MflI RGATCY 1 cut(s) 30
MnlI CCTC 2 cut(s) 59, 192
MslI CAYNNNNRTG 2 cut(s) 101, 189
MspA1I CMGCKG 1 cut(s) 62
MspI CCGG 3 cut(s) 21, 176, 189
MspR9I CCNGG 3 cut(s) 21, 91, 176
MvaI CCWGG 1 cut(s) 91
NciI CCSGG 2 cut(s) 21, 176
NdeII GATC 2 cut(s) 30, 93
NlaIII CATG 1 cut(s) 106
NlaIV GGNNCC 3 cut(s) 47, 55, 180
NmeAIII GCCGAG 1 cut(s) 30
OliI CACNNNNGTG 1 cut(s) 189
PfoI TCCNGGA 1 cut(s) 174
PkrI GCNGC 2 cut(s) 61, 157
Psp6I CCWGG 1 cut(s) 89
PspGI CCWGG 1 cut(s) 89
PspN4I GGNNCC 3 cut(s) 47, 55, 180
PspPI GGNCC 2 cut(s) 45, 87
PsuI RGATCY 1 cut(s) 30
RseI CAYNNNNRTG 2 cut(s) 101, 189
SatI GCNGC 2 cut(s) 60, 156
Sau3AI GATC 2 cut(s) 30, 93
Sau96I GGNCC 2 cut(s) 45, 87
ScrFI CCNGG 3 cut(s) 21, 91, 176
SfaNI GCATC 1 cut(s) 142
SinI GGWCC 2 cut(s) 45, 87
SmiMI CAYNNNNRTG 2 cut(s) 101, 189
SsiI CCGC 3 cut(s) 57, 60, 156
StyD4I CCNGG 3 cut(s) 19, 89, 174
TauI GCSGC 2 cut(s) 62, 158
VpaK11BI GGWCC 2 cut(s) 45, 87
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.