Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002427

Physical Location & Seq

Genomic Coordinates Reverse (-)

2606269 .. 2607507

Gene Structure 1239 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G08270.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGAACGCGCTTGAATACTTCAAAATCTATCTCAAATATGAGAAGAACCCTAGGATCAGAGATGCCATCACCGACAAGTTCTACGAGTATCTCCGTCGTGCTGAGGAAATTCGTGCGGTATTAGTTGAAGTTGGATCGGGGAAAGGATCGAATGGCGACGCAGCGGTTGCTACGAAGCCTAAGACTAAGCCCAAAGACGGAGGAGATGGAGAAGAATCAAAGCTTCGAGCTGGGTTAAACTCTGCTATTATAAGGGAAAAGCCTAACGTTAAGTGGACAGTTGTTGCTGGGCTTGAAAGTGCCAAACAAGCTTTAAAGGAAGCTGTGATTTTGCCTGTGAATTTTCCACAGTTCTTCACCGGTAAATATTTGAGAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005768 GO:0005770 GO:0005771 GO:0005911 GO:0006810 GO:0006996 GO:0007032 GO:0007033 GO:0008150 GO:0009506 GO:0009653 GO:0009888 GO:0009987 GO:0010026 GO:0010090 GO:0010091 GO:0010256 GO:0012505 GO:0016043 GO:0016050 GO:0016192 GO:0030054 GO:0030154 GO:0031410 GO:0031982 GO:0032502 GO:0032989 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048468 GO:0048856 GO:0048869 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055044 GO:0055065 GO:0055067 GO:0055075 GO:0055078 GO:0055080 GO:0065007 GO:0065008 GO:0071840 GO:0090558 GO:0090626 GO:0097708 GO:0098771

KEGG Pathways

Metabolic & Signaling

ko04144 ko04217 map04144 map04217

Pfam Domains

Protein Families

AAA MIT Vps4_C

Protein Analysis

126

Amino Acids

14.06

Weight (kDa)

9.6

Isoelectric Point (pI)

25.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIT	PF04212	2 - 38	3.5e-07	MIT (microtubule interacting and transport) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0002427)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08270 AT1G08270 AT2G27600
fragaria_vesca	FvH4_3g24610 FvH4_3g24610 FvH4_3g24610 FvH4_3g24610
malus_domestica	MD03G1141900.v1.1 MD11G1161300.v1.1
prunus_persica	Prupe.6G127200_v2.0.a1
pyrus_communis	pycom03g09670 pycom11g13390
rosa_chinensis	RchiOBHm_Chr2g0101721 RchiOBHm_Chr5g0044161 RchiOBHm_Chr6g0255971 RchiOBHm_Chr6g0260081 RchiOBHm_Chr7g0184771
rosa_laevigata	RLG00000009143 RLG00000014364 RLG00000021343 RLG00000035169 RLG00000036978
rosa_multiflora	Rmu_sc0000363.1_g000012 Rmu_sc0001648.1_g000029 Rmu_sc0001857.1_g000012 Rmu_sc0004300.1_g000002 Rmu_sc0009830.1_g000003
rosa_roxburghii	Rroxscaffold_2G00091250 Rroxscaffold_3G00264580 Rroxscaffold_7G00197410
rosa_rugosa	Rorug03G0333400
rosa_samantha	Rh2BG234400 Rh2CG154700 Rh5AG295900 Rh5BG309400 Rh5CG292800 Rh5CG330700 Rh6AG305600 Rh7BG180900
rosa_wichuraiana	Rw5G027360 Rw5G027430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	251
AccII	CGCG	1 cut(s)	8
AciI	CCGC	2 cut(s)	116, 164
AclI	AACGTT	1 cut(s)	267
AclWI	GGATC	3 cut(s)	62, 142, 154
AcsI	RAATTY	2 cut(s)	108, 340
AfiI	CCNNNNNNNGG	1 cut(s)	197
AgeI	ACCGGT	1 cut(s)	359
AgsI	TTSAA	4 cut(s)	14, 22, 128, 296
AluBI	AGCT	5 cut(s)	223, 230, 311, 323, 377
AluI	AGCT	5 cut(s)	223, 230, 311, 323, 377
AlwI	GGATC	3 cut(s)	62, 142, 154
ApeKI	GCWGC	1 cut(s)	161
ApoI	RAATTY	2 cut(s)	108, 340
AsiGI	ACCGGT	1 cut(s)	359
AspA2I	CCTAGG	1 cut(s)	50
AspLEI	GCGC	1 cut(s)	10
AsuHPI	GGTGA	2 cut(s)	61, 349
AvrII	CCTAGG	1 cut(s)	50
BbvCI	CCTCAGC	1 cut(s)	102
BbvI	GCAGC	1 cut(s)	173
BccI	CCATC	2 cut(s)	74, 200
BfaI	CTAG	1 cut(s)	51
BisI	GCNGC	1 cut(s)	162
BlnI	CCTAGG	1 cut(s)	50
BlsI	GCNGC	1 cut(s)	163
BmsI	GCATC	1 cut(s)	52
Bpu10I	CCTNAGC	1 cut(s)	102
BsaJI	CCNNGG	1 cut(s)	50
BsaWI	WCCGGW	1 cut(s)	359
Bsc4I	CCNNNNNNNGG	1 cut(s)	197
Bse118I	RCCGGY	1 cut(s)	359
BseDI	CCNNGG	1 cut(s)	50
BseLI	CCNNNNNNNGG	1 cut(s)	197
BseMII	CTCAG	1 cut(s)	93
BseRI	GAGGAG	1 cut(s)	216
BseXI	GCAGC	1 cut(s)	173
BseYI	CCCAGC	2 cut(s)	230, 287
Bsh1236I	CGCG	1 cut(s)	8
BshTI	ACCGGT	1 cut(s)	359
BsiSI	CCGG	1 cut(s)	360
BslI	CCNNNNNNNGG	1 cut(s)	197
Bsp143I	GATC	3 cut(s)	54, 134, 146
BspACI	CCGC	2 cut(s)	116, 164
BspCNI	CTCAG	1 cut(s)	94
BspFNI	CGCG	1 cut(s)	8
BspPI	GGATC	3 cut(s)	62, 142, 154
BsrFI	RCCGGY	1 cut(s)	359
BssAI	RCCGGY	1 cut(s)	359
BssECI	CCNNGG	1 cut(s)	50
BssMI	GATC	3 cut(s)	54, 134, 146
BssT1I	CCWWGG	1 cut(s)	50
Bst4CI	ACNGT	2 cut(s)	280, 351
BstAPI	GCANNNNNTGC	1 cut(s)	167
BstDEI	CTNAG	3 cut(s)	102, 180, 186
BstFNI	CGCG	1 cut(s)	8
BstHHI	GCGC	1 cut(s)	10
BstKTI	GATC	3 cut(s)	57, 137, 149
BstMBI	GATC	3 cut(s)	54, 134, 146
BstMWI	GCNNNNNNNGC	2 cut(s)	167, 308
BstUI	CGCG	1 cut(s)	8
BstV1I	GCAGC	1 cut(s)	173
CfoI	GCGC	1 cut(s)	10
Cfr10I	RCCGGY	1 cut(s)	359
CseI	GACGC	1 cut(s)	167
CspAI	ACCGGT	1 cut(s)	359
CviJI	RGCY	9 cut(s)	178, 190, 223, 230, 262, 292, 311, 323, 377
CviKI_1	RGCY	9 cut(s)	178, 190, 223, 230, 262, 292, 311, 323, 377
DdeI	CTNAG	3 cut(s)	102, 180, 186
DpnI	GATC	3 cut(s)	56, 136, 148
DpnII	GATC	3 cut(s)	54, 134, 146
DraI	TTTAAA	1 cut(s)	315
Eco130I	CCWWGG	1 cut(s)	50
EcoT14I	CCWWGG	1 cut(s)	50
ErhI	CCWWGG	1 cut(s)	50
FaiI	YATR	2 cut(s)	39, 251
Fnu4HI	GCNGC	1 cut(s)	162
Fsp4HI	GCNGC	1 cut(s)	162
FspBI	CTAG	1 cut(s)	51
GlaI	GCGC	1 cut(s)	9
GluI	GCNGC	1 cut(s)	162
GsaI	CCCAGC	2 cut(s)	234, 291
HapII	CCGG	1 cut(s)	360
HgaI	GACGC	1 cut(s)	167
HhaI	GCGC	1 cut(s)	10
Hin6I	GCGC	1 cut(s)	8
HinP1I	GCGC	1 cut(s)	8
HindIII	AAGCTT	2 cut(s)	221, 309
HinfI	GANTC	1 cut(s)	215
HpaII	CCGG	1 cut(s)	360
HphI	GGTGA	2 cut(s)	61, 349
Hpy166II	GTNNAC	1 cut(s)	276
Hpy188I	TCNGA	1 cut(s)	59
Hpy8I	GTNNAC	1 cut(s)	276
Hpy99I	CGWCG	2 cut(s)	99, 161
HpyCH4III	ACNGT	2 cut(s)	280, 351
HpyCH4IV	ACGT	1 cut(s)	267
HpyF10VI	GCNNNNNNNGC	2 cut(s)	167, 308
HpyF3I	CTNAG	3 cut(s)	102, 180, 186
HpySE526I	ACGT	1 cut(s)	267
HspAI	GCGC	1 cut(s)	8
Kzo9I	GATC	3 cut(s)	54, 134, 146
LpnPI	CCDG	4 cut(s)	216, 273, 348, 373
Lsp1109I	GCAGC	1 cut(s)	173
LweI	GCATC	1 cut(s)	52
MaeI	CTAG	1 cut(s)	51
MaeII	ACGT	1 cut(s)	267
MalI	GATC	3 cut(s)	56, 136, 148
MboI	GATC	3 cut(s)	54, 134, 146
MboII	GAAGA	3 cut(s)	55, 224, 346
MluCI	AATT	2 cut(s)	108, 340
MmeI	TCCRAC	1 cut(s)	112
MnlI	CCTC	2 cut(s)	97, 194
MseI	TTAA	3 cut(s)	236, 270, 314
MspA1I	CMGCKG	1 cut(s)	164
MspI	CCGG	1 cut(s)	360
MvnI	CGCG	1 cut(s)	8
MwoI	GCNNNNNNNGC	2 cut(s)	167, 308
NdeII	GATC	3 cut(s)	54, 134, 146
PfeI	GAWTC	1 cut(s)	215
PinAI	ACCGGT	1 cut(s)	359
PkrI	GCNGC	1 cut(s)	163
PsiI	TTATAA	1 cut(s)	251
Psp1406I	AACGTT	1 cut(s)	267
PspFI	CCCAGC	2 cut(s)	230, 287
SaqAI	TTAA	3 cut(s)	236, 270, 314
SatI	GCNGC	1 cut(s)	162
Sau3AI	GATC	3 cut(s)	54, 134, 146
SetI	ASST	6 cut(s)	225, 232, 270, 313, 325, 379
SfaNI	GCATC	1 cut(s)	52
Sse9I	AATT	2 cut(s)	108, 340
SsiI	CCGC	2 cut(s)	116, 164
SspI	AATATT	1 cut(s)	368
SspMI	CTAG	1 cut(s)	51
StyI	CCWWGG	1 cut(s)	50
TaaI	ACNGT	2 cut(s)	280, 351
TaiI	ACGT	1 cut(s)	270
TaqI	TCGA	2 cut(s)	149, 226
TasI	AATT	2 cut(s)	108, 340
TfiI	GAWTC	1 cut(s)	215
Tru1I	TTAA	3 cut(s)	236, 270, 314
Tru9I	TTAA	3 cut(s)	236, 270, 314
TseI	GCWGC	1 cut(s)	161
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	2 cut(s)	83, 213
XapI	RAATTY	2 cut(s)	108, 340
XmaJI	CCTAGG	1 cut(s)	50
XspI	CTAG	1 cut(s)	51

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.