Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001648.1

Orthogroup ID

OG0002427

Physical Location & Seq

Genomic Coordinates Forward (+)

194619 .. 197993

Gene Structure 3375 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001648.1_g000029.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

atgaatgtttcaattggagttgagatgaagacctttcatgttgtgagttttgccaaattccgactttgggccggtggcagtgccgccattgtggtggtgttttccggcggtttccggctacctcagggatggttagaatatcaattaatcgtcgtcgaagctgaggggtacgttcggaatcctaagatcaaggagtctattgcccagaaattcaccgagtacttgcttcgcgctgtggagattcgcgccgttttggatgatggcagggtcggaccggcctccaacggtgatgaggcggtggctagcaagccaaaaaccaagcccaaggacagcgaaggctatgatggggaggatccaaagcaggccaagctccgggacgggcttaattcggcgattattaggggaaaacccaatttcaagtggaatgatgtggcgggtctcgagagcggtaaccaggccttgcaagtggcacttgtattgctggtcaagttccttactggttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000902 GO:0000904 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005768 GO:0005770 GO:0005771 GO:0005911 GO:0006629 GO:0006810 GO:0006900 GO:0006914 GO:0006996 GO:0007032 GO:0007033 GO:0007034 GO:0008104 GO:0008144 GO:0008150 GO:0008152 GO:0008202 GO:0009056 GO:0009506 GO:0009653 GO:0009888 GO:0009987 GO:0010008 GO:0010026 GO:0010090 GO:0010091 GO:0010256 GO:0012505 GO:0016020 GO:0016043 GO:0016050 GO:0016125 GO:0016192 GO:0016197 GO:0016236 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0022607 GO:0030054 GO:0030154 GO:0030554 GO:0031090 GO:0031410 GO:0031982 GO:0032502 GO:0032507 GO:0032509 GO:0032511 GO:0032553 GO:0032555 GO:0032559 GO:0032989 GO:0032991 GO:0033036 GO:0033365 GO:0034067 GO:0034613 GO:0035639 GO:0036094 GO:0036452 GO:0042592 GO:0042802 GO:0042803 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045053 GO:0045185 GO:0045324 GO:0046907 GO:0046983 GO:0048468 GO:0048856 GO:0048869 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0051235 GO:0051259 GO:0051260 GO:0051641 GO:0051649 GO:0051651 GO:0055044 GO:0055065 GO:0055067 GO:0055075 GO:0055078 GO:0055080 GO:0061024 GO:0061919 GO:0065003 GO:0065007 GO:0065008 GO:0070676 GO:0070727 GO:0071704 GO:0071840 GO:0071985 GO:0090558 GO:0090626 GO:0097159 GO:0097367 GO:0097708 GO:0098588 GO:0098771 GO:0098796 GO:0098805 GO:1901265 GO:1901360 GO:1901363 GO:1901615 GO:1902494 GO:1904949 GO:1990621

KEGG Pathways

Metabolic & Signaling

ko04144 ko04217 map04144 map04217

Pfam Domains

Protein Families

AAA MIT Vps4_C

Protein Analysis

167

Amino Acids

18.21

Weight (kDa)

9.1

Isoelectric Point (pI)

22.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002427)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08270 AT1G08270 AT2G27600
fragaria_vesca	FvH4_3g24610 FvH4_3g24610 FvH4_3g24610 FvH4_3g24610
malus_domestica	MD03G1141900.v1.1 MD11G1161300.v1.1
prunus_persica	Prupe.6G127200_v2.0.a1
pyrus_communis	pycom03g09670 pycom11g13390
rosa_chinensis	RchiOBHm_Chr2g0101721 RchiOBHm_Chr5g0044161 RchiOBHm_Chr6g0255971 RchiOBHm_Chr6g0260081 RchiOBHm_Chr7g0184771
rosa_laevigata	RLG00000009143 RLG00000014364 RLG00000021343 RLG00000035169 RLG00000036978
rosa_multiflora	Rmu_sc0000363.1_g000012 Rmu_sc0001648.1_g000029 Rmu_sc0001857.1_g000012 Rmu_sc0004300.1_g000002 Rmu_sc0009830.1_g000003
rosa_roxburghii	Rroxscaffold_2G00091250 Rroxscaffold_3G00264580 Rroxscaffold_7G00197410
rosa_rugosa	Rorug03G0333400
rosa_samantha	Rh2BG234400 Rh2CG154700 Rh5AG295900 Rh5BG309400 Rh5CG292800 Rh5CG330700 Rh6AG305600 Rh7BG180900
rosa_wichuraiana	Rw5G027360 Rw5G027430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	447
AccII	CGCG	2 cut(s)	231, 246
AciI	CCGC	5 cut(s)	84, 108, 296, 434, 447
AclWI	GGATC	2 cut(s)	347, 360
AcsI	RAATTY	2 cut(s)	56, 209
AfaI	GTAC	2 cut(s)	170, 221
AfiI	CCNNNNNNNGG	2 cut(s)	67, 372
AgsI	TTSAA	2 cut(s)	12, 418
AjnI	CCWGG	1 cut(s)	453
AluBI	AGCT	2 cut(s)	161, 370
AluI	AGCT	2 cut(s)	161, 370
Alw26I	GTCTC	1 cut(s)	443
AlwI	GGATC	2 cut(s)	347, 360
Ama87I	CYCGRG	1 cut(s)	440
AoxI	GGCC	4 cut(s)	69, 276, 363, 456
ApoI	RAATTY	2 cut(s)	56, 209
AseI	ATTAAT	1 cut(s)	146
AspLEI	GCGC	2 cut(s)	233, 248
AspS9I	GGNCC	2 cut(s)	69, 272
AsuC2I	CCSGG	1 cut(s)	374
AsuHPI	GGTGA	2 cut(s)	205, 299
AsuNHI	GCTAGC	1 cut(s)	302
AvaI	CYCGRG	1 cut(s)	440
AvaII	GGWCC	1 cut(s)	272
AxyI	CCTNAGG	1 cut(s)	123
BamHI	GGATCC	1 cut(s)	352
BbsI	GAAGAC	1 cut(s)	35
BbvCI	CCTCAGC	1 cut(s)	162
BccI	CCATC	3 cut(s)	123, 254, 338
BceAI	ACGGC	1 cut(s)	233
BciT130I	CCWGG	1 cut(s)	455
BcnI	CCSGG	1 cut(s)	374
BcoDI	GTCTC	1 cut(s)	443
BfaI	CTAG	1 cut(s)	303
BisI	GCNGC	1 cut(s)	84
BlsI	GCNGC	1 cut(s)	85
BmcAI	AGTACT	1 cut(s)	221
Bme1390I	CCNGG	2 cut(s)	374, 455
Bme18I	GGWCC	1 cut(s)	272
BmeT110I	CYCGRG	1 cut(s)	440
BmgT120I	GGNCC	2 cut(s)	69, 272
BmiI	GGNNCC	1 cut(s)	354
BmrFI	CCNGG	2 cut(s)	374, 455
BmtI	GCTAGC	1 cut(s)	306
BpiI	GAAGAC	1 cut(s)	35
Bpu10I	CCTNAGC	1 cut(s)	162
BpuMI	CCSGG	1 cut(s)	374
BsaI	GGTCTC	1 cut(s)	443
BsaJI	CCNNGG	1 cut(s)	324
Bsc4I	CCNNNNNNNGG	2 cut(s)	67, 372
Bse118I	RCCGGY	2 cut(s)	71, 274
Bse1I	ACTGG	1 cut(s)	502
Bse21I	CCTNAGG	1 cut(s)	123
BseBI	CCWGG	1 cut(s)	455
BseDI	CCNNGG	1 cut(s)	324
BseGI	GGATG	2 cut(s)	134, 262
BseLI	CCNNNNNNNGG	2 cut(s)	67, 372
BseMII	CTCAG	2 cut(s)	137, 153
BseNI	ACTGG	1 cut(s)	502
Bsh1236I	CGCG	2 cut(s)	231, 246
BshFI	GGCC	4 cut(s)	71, 278, 365, 458
BsiHKCI	CYCGRG	1 cut(s)	440
BsiSI	CCGG	5 cut(s)	72, 105, 115, 275, 373
BslFI	GGGAC	1 cut(s)	389
BslI	CCNNNNNNNGG	2 cut(s)	67, 372
BsmAI	GTCTC	1 cut(s)	443
BsmFI	GGGAC	1 cut(s)	389
BsnI	GGCC	4 cut(s)	71, 278, 365, 458
Bso31I	GGTCTC	1 cut(s)	443
BsoBI	CYCGRG	1 cut(s)	440
Bsp143I	GATC	2 cut(s)	186, 352
BspACI	CCGC	5 cut(s)	84, 108, 296, 434, 447
BspANI	GGCC	4 cut(s)	71, 278, 365, 458
BspCNI	CTCAG	2 cut(s)	136, 154
BspFNI	CGCG	2 cut(s)	231, 246
BspLI	GGNNCC	1 cut(s)	354
BspOI	GCTAGC	1 cut(s)	306
BspPI	GGATC	2 cut(s)	347, 360
BspTNI	GGTCTC	1 cut(s)	443
BsrBI	CCGCTC	1 cut(s)	447
BsrFI	RCCGGY	2 cut(s)	71, 274
BsrI	ACTGG	1 cut(s)	502
BssAI	RCCGGY	2 cut(s)	71, 274
BssECI	CCNNGG	1 cut(s)	324
BssMI	GATC	2 cut(s)	186, 352
BssT1I	CCWWGG	1 cut(s)	324
Bst2UI	CCWGG	1 cut(s)	455
Bst4CI	ACNGT	1 cut(s)	287
BstC8I	GCNNGC	3 cut(s)	304, 308, 363
BstDEI	CTNAG	3 cut(s)	123, 162, 183
BstEII	GGTNACC	1 cut(s)	449
BstF5I	GGATG	2 cut(s)	134, 262
BstFNI	CGCG	2 cut(s)	231, 246
BstHHI	GCGC	2 cut(s)	233, 248
BstKTI	GATC	2 cut(s)	189, 355
BstMAI	GTCTC	1 cut(s)	443
BstMBI	GATC	2 cut(s)	186, 352
BstMWI	GCNNNNNNNGC	1 cut(s)	367
BstNI	CCWGG	1 cut(s)	455
BstPI	GGTNACC	1 cut(s)	449
BstSCI	CCNGG	2 cut(s)	372, 453
BstUI	CGCG	2 cut(s)	231, 246
BstV2I	GAAGAC	1 cut(s)	35
BstX2I	RGATCY	1 cut(s)	352
BstXI	CCANNNNNNTGG	1 cut(s)	94
BstYI	RGATCY	1 cut(s)	352
Bsu36I	CCTNAGG	1 cut(s)	123
BsuRI	GGCC	4 cut(s)	71, 278, 365, 458
BtsCI	GGATG	2 cut(s)	134, 262
BtsI	GCAGTG	1 cut(s)	85
BtsIMutI	CAGTG	1 cut(s)	85
Cac8I	GCNNGC	3 cut(s)	304, 308, 363
CfoI	GCGC	2 cut(s)	233, 248
Cfr10I	RCCGGY	2 cut(s)	71, 274
Cfr13I	GGNCC	2 cut(s)	69, 272
CpoI	CGGWCCG	1 cut(s)	272
Csp6I	GTAC	2 cut(s)	169, 220
CspI	CGGWCCG	1 cut(s)	272
CviAII	CATG	1 cut(s)	38
CviQI	GTAC	2 cut(s)	169, 220
DdeI	CTNAG	3 cut(s)	123, 162, 183
DpnI	GATC	2 cut(s)	188, 354
DpnII	GATC	2 cut(s)	186, 352
Eco130I	CCWWGG	1 cut(s)	324
Eco147I	AGGCCT	1 cut(s)	458
Eco31I	GGTCTC	1 cut(s)	443
Eco47I	GGWCC	1 cut(s)	272
Eco81I	CCTNAGG	1 cut(s)	123
Eco88I	CYCGRG	1 cut(s)	440
Eco91I	GGTNACC	1 cut(s)	449
EcoO65I	GGTNACC	1 cut(s)	449
EcoRII	CCWGG	1 cut(s)	453
EcoT14I	CCWWGG	1 cut(s)	324
ErhI	CCWWGG	1 cut(s)	324
FaeI	CATG	1 cut(s)	41
FaiI	YATR	2 cut(s)	39, 342
FalI	AAGNNNNNCTT	2 cut(s)	456, 488
FaqI	GGGAC	1 cut(s)	389
FatI	CATG	1 cut(s)	37
FauI	CCCGC	1 cut(s)	427
Fnu4HI	GCNGC	1 cut(s)	84
FokI	GGATG	2 cut(s)	141, 269
Fsp4HI	GCNGC	1 cut(s)	84
FspBI	CTAG	1 cut(s)	303
GlaI	GCGC	2 cut(s)	232, 247
GluI	GCNGC	1 cut(s)	84
HaeIII	GGCC	4 cut(s)	71, 278, 365, 458
HapII	CCGG	5 cut(s)	72, 105, 115, 275, 373
HhaI	GCGC	2 cut(s)	233, 248
Hin1II	CATG	1 cut(s)	41
Hin6I	GCGC	2 cut(s)	231, 246
HinP1I	GCGC	2 cut(s)	231, 246
HinfI	GANTC	3 cut(s)	178, 194, 241
HpaII	CCGG	5 cut(s)	72, 105, 115, 275, 373
HphI	GGTGA	2 cut(s)	205, 299
Hpy188I	TCNGA	3 cut(s)	62, 177, 272
Hpy188III	TCNNGA	2 cut(s)	440, 442
Hpy99I	CGWCG	2 cut(s)	155, 158
HpyAV	CCTTC	1 cut(s)	329
HpyCH4III	ACNGT	1 cut(s)	287
HpyCH4IV	ACGT	1 cut(s)	171
HpyCH4V	TGCA	1 cut(s)	463
HpyF10VI	GCNNNNNNNGC	1 cut(s)	367
HpyF3I	CTNAG	3 cut(s)	123, 162, 183
HpySE526I	ACGT	1 cut(s)	171
Hsp92II	CATG	1 cut(s)	41
HspAI	GCGC	2 cut(s)	231, 246
Kzo9I	GATC	2 cut(s)	186, 352
LmnI	GCTCC	1 cut(s)	375
MaeI	CTAG	1 cut(s)	303
MaeII	ACGT	1 cut(s)	171
MaeIII	GTNAC	1 cut(s)	449
MalI	GATC	2 cut(s)	188, 354
MbiI	CCGCTC	1 cut(s)	447
MboI	GATC	2 cut(s)	186, 352
MboII	GAAGA	1 cut(s)	40
MfeI	CAATTG	1 cut(s)	12
MflI	RGATCY	1 cut(s)	352
MluCI	AATT	6 cut(s)	12, 56, 143, 209, 385, 412
MlyI	GAGTC	1 cut(s)	203
MmeI	TCCRAC	3 cut(s)	85, 250, 306
MnlI	CCTC	5 cut(s)	132, 157, 286, 289, 343
MseI	TTAA	2 cut(s)	146, 384
MslI	CAYNNNNRTG	1 cut(s)	92
MspI	CCGG	5 cut(s)	72, 105, 115, 275, 373
MspR9I	CCNGG	2 cut(s)	374, 455
MunI	CAATTG	1 cut(s)	12
MvaI	CCWGG	1 cut(s)	455
MvnI	CGCG	2 cut(s)	231, 246
MwoI	GCNNNNNNNGC	1 cut(s)	367
NciI	CCSGG	1 cut(s)	374
NdeII	GATC	2 cut(s)	186, 352
NheI	GCTAGC	1 cut(s)	302
NlaIII	CATG	1 cut(s)	41
NlaIV	GGNNCC	1 cut(s)	354
PaeR7I	CTCGAG	1 cut(s)	440
PceI	AGGCCT	1 cut(s)	458
PfeI	GAWTC	2 cut(s)	178, 241
PfoI	TCCNGGA	1 cut(s)	372
PkrI	GCNGC	1 cut(s)	85
PleI	GAGTC	1 cut(s)	202
PpsI	GAGTC	1 cut(s)	202
PshBI	ATTAAT	1 cut(s)	146
Psp6I	CCWGG	1 cut(s)	453
PspEI	GGTNACC	1 cut(s)	449
PspGI	CCWGG	1 cut(s)	453
PspN4I	GGNNCC	1 cut(s)	354
PspPI	GGNCC	2 cut(s)	69, 272
PsuI	RGATCY	1 cut(s)	352
RsaI	GTAC	2 cut(s)	170, 221
RsaNI	GTAC	2 cut(s)	169, 220
RseI	CAYNNNNRTG	1 cut(s)	92
Rsr2I	CGGWCCG	1 cut(s)	272
RsrII	CGGWCCG	1 cut(s)	272
SaqAI	TTAA	2 cut(s)	146, 384
SatI	GCNGC	1 cut(s)	84
Sau3AI	GATC	2 cut(s)	186, 352
Sau96I	GGNCC	2 cut(s)	69, 272
ScaI	AGTACT	1 cut(s)	221
SchI	GAGTC	1 cut(s)	203
ScrFI	CCNGG	2 cut(s)	374, 455
SetI	ASST	5 cut(s)	35, 124, 163, 174, 372
Sfr274I	CTCGAG	1 cut(s)	440
SinI	GGWCC	1 cut(s)	272
SlaI	CTCGAG	1 cut(s)	440
SmiMI	CAYNNNNRTG	1 cut(s)	92
SmlI	CTYRAG	1 cut(s)	440
SmoI	CTYRAG	1 cut(s)	440
Sse9I	AATT	6 cut(s)	12, 56, 143, 209, 385, 412
SseBI	AGGCCT	1 cut(s)	458
SsiI	CCGC	5 cut(s)	84, 108, 296, 434, 447
SspMI	CTAG	1 cut(s)	303
StuI	AGGCCT	1 cut(s)	458
StyD4I	CCNGG	2 cut(s)	372, 453
StyI	CCWWGG	1 cut(s)	324
TaaI	ACNGT	1 cut(s)	287
TaiI	ACGT	1 cut(s)	174
TaqI	TCGA	2 cut(s)	156, 441
TasI	AATT	6 cut(s)	12, 56, 143, 209, 385, 412
TatI	WGTACW	1 cut(s)	219
TauI	GCSGC	1 cut(s)	86
TfiI	GAWTC	2 cut(s)	178, 241
Tru1I	TTAA	2 cut(s)	146, 384
Tru9I	TTAA	2 cut(s)	146, 384
TscAI	CASTG	1 cut(s)	85
TspDTI	ATGAA	3 cut(s)	17, 26, 41
TspRI	CASTG	1 cut(s)	85
VpaK11BI	GGWCC	1 cut(s)	272
VspI	ATTAAT	1 cut(s)	146
XapI	RAATTY	2 cut(s)	56, 209
XhoI	CTCGAG	1 cut(s)	440
XspI	CTAG	1 cut(s)	303
ZrmI	AGTACT	1 cut(s)	221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.