Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0002427

Physical Location & Seq

Genomic Coordinates Reverse (-)

58180587 .. 58180832

Gene Structure 246 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00264580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 246 bp

ATGTATAGCAATTTCAAGAAAGCTATTTCCCGGATATTCACCGAGTACTTGTACAGCGCTGTGGAGATTTGTATCGTTTTAGATGACGGCGGGCCCAGCTTGGCCTTCAACGGTGATGCGGCGGTGGCTACTAGTCCGAAGACCAACCCTAAGGATGGCAAAGGCTGCGATAGGGATGATCCGGAGCAGCCAAGCTCGAGCGGGCTTAATTTTCCGGTCAAGTTCCCTCGGTTCTTTAGTGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000902 GO:0000904 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005768 GO:0005770 GO:0005771 GO:0005911 GO:0006629 GO:0006810 GO:0006900 GO:0006914 GO:0006996 GO:0007032 GO:0007033 GO:0007034 GO:0008104 GO:0008144 GO:0008150 GO:0008152 GO:0008202 GO:0009056 GO:0009506 GO:0009653 GO:0009888 GO:0009987 GO:0010008 GO:0010026 GO:0010090 GO:0010091 GO:0010256 GO:0012505 GO:0016020 GO:0016043 GO:0016050 GO:0016125 GO:0016192 GO:0016197 GO:0016236 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0022607 GO:0030054 GO:0030154 GO:0030554 GO:0031090 GO:0031410 GO:0031982 GO:0032502 GO:0032507 GO:0032509 GO:0032511 GO:0032553 GO:0032555 GO:0032559 GO:0032989 GO:0032991 GO:0033036 GO:0033365 GO:0034067 GO:0034613 GO:0035639 GO:0036094 GO:0036452 GO:0042592 GO:0042802 GO:0042803 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045053 GO:0045185 GO:0045324 GO:0046907 GO:0046983 GO:0048468 GO:0048856 GO:0048869 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0051235 GO:0051259 GO:0051260 GO:0051641 GO:0051649 GO:0051651 GO:0055044 GO:0055065 GO:0055067 GO:0055075 GO:0055078 GO:0055080 GO:0061024 GO:0061919 GO:0065003 GO:0065007 GO:0065008 GO:0070676 GO:0070727 GO:0071704 GO:0071840 GO:0071985 GO:0090558 GO:0090626 GO:0097159 GO:0097367 GO:0097708 GO:0098588 GO:0098771 GO:0098796 GO:0098805 GO:1901265 GO:1901360 GO:1901363 GO:1901615 GO:1902494 GO:1904949 GO:1990621

KEGG Pathways

Metabolic & Signaling

ko04144 ko04217 map04144 map04217

Pfam Domains

Protein Families

AAA MIT Vps4_C

Protein Analysis

81

Amino Acids

8.78

Weight (kDa)

5.16

Isoelectric Point (pI)

37.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002427)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08270 AT1G08270 AT2G27600
fragaria_vesca	FvH4_3g24610 FvH4_3g24610 FvH4_3g24610 FvH4_3g24610
malus_domestica	MD03G1141900.v1.1 MD11G1161300.v1.1
prunus_persica	Prupe.6G127200_v2.0.a1
pyrus_communis	pycom03g09670 pycom11g13390
rosa_chinensis	RchiOBHm_Chr2g0101721 RchiOBHm_Chr5g0044161 RchiOBHm_Chr6g0255971 RchiOBHm_Chr6g0260081 RchiOBHm_Chr7g0184771
rosa_laevigata	RLG00000009143 RLG00000014364 RLG00000021343 RLG00000035169 RLG00000036978
rosa_multiflora	Rmu_sc0000363.1_g000012 Rmu_sc0001648.1_g000029 Rmu_sc0001857.1_g000012 Rmu_sc0004300.1_g000002 Rmu_sc0009830.1_g000003
rosa_roxburghii	Rroxscaffold_2G00091250 Rroxscaffold_3G00264580 Rroxscaffold_7G00197410
rosa_rugosa	Rorug03G0333400
rosa_samantha	Rh2BG234400 Rh2CG154700 Rh5AG295900 Rh5BG309400 Rh5CG292800 Rh5CG330700 Rh6AG305600 Rh7BG180900
rosa_wichuraiana	Rw5G027360 Rw5G027430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	201
AccIII	TCCGGA	1 cut(s)	181
AciI	CCGC	4 cut(s)	90, 119, 122, 201
AclWI	GGATC	1 cut(s)	173
AfaI	GTAC	2 cut(s)	47, 53
AfeI	AGCGCT	1 cut(s)	58
AfiI	CCNNNNNNNGG	1 cut(s)	155
AgsI	TTSAA	2 cut(s)	16, 109
AhlI	ACTAGT	1 cut(s)	131
AluBI	AGCT	3 cut(s)	23, 99, 195
AluI	AGCT	3 cut(s)	23, 99, 195
AlwI	GGATC	1 cut(s)	173
Ama87I	CYCGRG	1 cut(s)	196
Aor13HI	TCCGGA	1 cut(s)	181
Aor51HI	AGCGCT	1 cut(s)	58
AoxI	GGCC	2 cut(s)	92, 102
ApaI	GGGCCC	1 cut(s)	96
ApeKI	GCWGC	2 cut(s)	165, 187
AspLEI	GCGC	1 cut(s)	59
AspS9I	GGNCC	2 cut(s)	92, 93
AsuC2I	CCSGG	1 cut(s)	31
AsuHPI	GGTGA	2 cut(s)	31, 125
AvaI	CYCGRG	1 cut(s)	196
AxyI	CCTNAGG	1 cut(s)	150
BaeGI	GKGCMC	1 cut(s)	96
BanII	GRGCYC	1 cut(s)	96
BbsI	GAAGAC	1 cut(s)	146
BbvI	GCAGC	2 cut(s)	152, 199
BccI	CCATC	1 cut(s)	149
BceAI	ACGGC	1 cut(s)	103
BcnI	CCSGG	1 cut(s)	31
BcuI	ACTAGT	1 cut(s)	131
BfaI	CTAG	1 cut(s)	132
BfoI	RGCGCY	1 cut(s)	60
BisI	GCNGC	3 cut(s)	120, 166, 188
BlsI	GCNGC	3 cut(s)	121, 167, 189
BmcAI	AGTACT	1 cut(s)	47
Bme1390I	CCNGG	1 cut(s)	31
BmeT110I	CYCGRG	1 cut(s)	196
BmgT120I	GGNCC	2 cut(s)	92, 93
BmiI	GGNNCC	1 cut(s)	94
BmrFI	CCNGG	1 cut(s)	31
BmsI	GCATC	1 cut(s)	106
BpiI	GAAGAC	1 cut(s)	146
BpuMI	CCSGG	1 cut(s)	31
BsaBI	GATNNNNATC	1 cut(s)	71
BsaJI	CCNNGG	1 cut(s)	227
BsaWI	WCCGGW	2 cut(s)	181, 214
Bsc4I	CCNNNNNNNGG	1 cut(s)	155
Bse21I	CCTNAGG	1 cut(s)	150
Bse8I	GATNNNNATC	1 cut(s)	71
BseAI	TCCGGA	1 cut(s)	181
BseDI	CCNNGG	1 cut(s)	227
BseGI	GGATG	2 cut(s)	160, 181
BseJI	GATNNNNATC	1 cut(s)	71
BseLI	CCNNNNNNNGG	1 cut(s)	155
BseSI	GKGCMC	1 cut(s)	96
BseXI	GCAGC	2 cut(s)	152, 199
BseYI	CCCAGC	1 cut(s)	95
BshFI	GGCC	2 cut(s)	94, 104
BsiHKCI	CYCGRG	1 cut(s)	196
BsiSI	CCGG	3 cut(s)	31, 182, 215
BslI	CCNNNNNNNGG	1 cut(s)	155
BsnI	GGCC	2 cut(s)	94, 104
BsoBI	CYCGRG	1 cut(s)	196
Bsp120I	GGGCCC	1 cut(s)	92
Bsp1286I	GDGCHC	1 cut(s)	96
Bsp13I	TCCGGA	1 cut(s)	181
Bsp1407I	TGTACA	1 cut(s)	51
Bsp143I	GATC	1 cut(s)	178
BspACI	CCGC	4 cut(s)	90, 119, 122, 201
BspANI	GGCC	2 cut(s)	94, 104
BspEI	TCCGGA	1 cut(s)	181
BspLI	GGNNCC	1 cut(s)	94
BspPI	GGATC	1 cut(s)	173
BsrBI	CCGCTC	1 cut(s)	201
BsrGI	TGTACA	1 cut(s)	51
BssECI	CCNNGG	1 cut(s)	227
BssMI	GATC	1 cut(s)	178
Bst4CI	ACNGT	1 cut(s)	113
BstAPI	GCANNNNNTGC	1 cut(s)	165
BstAUI	TGTACA	1 cut(s)	51
BstC8I	GCNNGC	2 cut(s)	92, 203
BstDEI	CTNAG	1 cut(s)	150
BstF5I	GGATG	2 cut(s)	160, 181
BstH2I	RGCGCY	1 cut(s)	60
BstHHI	GCGC	1 cut(s)	59
BstKTI	GATC	1 cut(s)	181
BstMBI	GATC	1 cut(s)	178
BstMWI	GCNNNNNNNGC	3 cut(s)	96, 125, 165
BstSCI	CCNGG	1 cut(s)	29
BstSLI	GKGCMC	1 cut(s)	96
BstV1I	GCAGC	2 cut(s)	152, 199
BstV2I	GAAGAC	1 cut(s)	146
Bsu36I	CCTNAGG	1 cut(s)	150
BsuRI	GGCC	2 cut(s)	94, 104
BtsCI	GGATG	2 cut(s)	160, 181
Cac8I	GCNNGC	2 cut(s)	92, 203
CfoI	GCGC	1 cut(s)	59
Cfr13I	GGNCC	2 cut(s)	92, 93
Csp6I	GTAC	2 cut(s)	46, 52
CviJI	RGCY	9 cut(s)	23, 94, 99, 104, 128, 165, 190, 195, 205
CviKI_1	RGCY	9 cut(s)	23, 94, 99, 104, 128, 165, 190, 195, 205
CviQI	GTAC	2 cut(s)	46, 52
DdeI	CTNAG	1 cut(s)	150
DpnI	GATC	1 cut(s)	180
DpnII	GATC	1 cut(s)	178
Eco24I	GRGCYC	1 cut(s)	96
Eco47III	AGCGCT	1 cut(s)	58
Eco81I	CCTNAGG	1 cut(s)	150
Eco88I	CYCGRG	1 cut(s)	196
EcoT38I	GRGCYC	1 cut(s)	96
FaiI	YATR	1 cut(s)	6
FauI	CCCGC	2 cut(s)	83, 194
Fnu4HI	GCNGC	3 cut(s)	120, 166, 188
FokI	GGATG	2 cut(s)	167, 188
FriOI	GRGCYC	1 cut(s)	96
Fsp4HI	GCNGC	3 cut(s)	120, 166, 188
FspBI	CTAG	1 cut(s)	132
GlaI	GCGC	1 cut(s)	58
GluI	GCNGC	3 cut(s)	120, 166, 188
GsaI	CCCAGC	1 cut(s)	99
HaeII	RGCGCY	1 cut(s)	60
HaeIII	GGCC	2 cut(s)	94, 104
HapII	CCGG	3 cut(s)	31, 182, 215
HhaI	GCGC	1 cut(s)	59
Hin6I	GCGC	1 cut(s)	57
HinP1I	GCGC	1 cut(s)	57
HpaII	CCGG	3 cut(s)	31, 182, 215
HphI	GGTGA	2 cut(s)	31, 125
Hpy188I	TCNGA	1 cut(s)	138
Hpy188III	TCNNGA	2 cut(s)	16, 182
HpyAV	CCTTC	1 cut(s)	115
HpyCH4III	ACNGT	1 cut(s)	113
HpyF10VI	GCNNNNNNNGC	3 cut(s)	96, 125, 165
HpyF3I	CTNAG	1 cut(s)	150
HspAI	GCGC	1 cut(s)	57
Kpn2I	TCCGGA	1 cut(s)	181
Kzo9I	GATC	1 cut(s)	178
LmnI	GCTCC	1 cut(s)	184
LpnPI	CCDG	4 cut(s)	44, 109, 195, 228
Lsp1109I	GCAGC	2 cut(s)	152, 199
LweI	GCATC	1 cut(s)	106
MaeI	CTAG	1 cut(s)	132
MalI	GATC	1 cut(s)	180
MbiI	CCGCTC	1 cut(s)	201
MboI	GATC	1 cut(s)	178
MboII	GAAGA	1 cut(s)	151
MhlI	GDGCHC	1 cut(s)	96
MluCI	AATT	2 cut(s)	10, 208
MnlI	CCTC	1 cut(s)	237
MroI	TCCGGA	1 cut(s)	181
MseI	TTAA	1 cut(s)	207
MspI	CCGG	3 cut(s)	31, 182, 215
MspR9I	CCNGG	1 cut(s)	31
MwoI	GCNNNNNNNGC	3 cut(s)	96, 125, 165
NciI	CCSGG	1 cut(s)	31
NdeII	GATC	1 cut(s)	178
NlaIV	GGNNCC	1 cut(s)	94
PaeR7I	CTCGAG	1 cut(s)	196
PfoI	TCCNGGA	1 cut(s)	29
PkrI	GCNGC	3 cut(s)	121, 167, 189
PspFI	CCCAGC	1 cut(s)	95
PspN4I	GGNNCC	1 cut(s)	94
PspOMI	GGGCCC	1 cut(s)	92
PspPI	GGNCC	2 cut(s)	92, 93
PspXI	VCTCGAGB	1 cut(s)	196
RsaI	GTAC	2 cut(s)	47, 53
RsaNI	GTAC	2 cut(s)	46, 52
SaqAI	TTAA	1 cut(s)	207
SatI	GCNGC	3 cut(s)	120, 166, 188
Sau3AI	GATC	1 cut(s)	178
Sau96I	GGNCC	2 cut(s)	92, 93
ScaI	AGTACT	1 cut(s)	47
ScrFI	CCNGG	1 cut(s)	31
SduI	GDGCHC	1 cut(s)	96
SetI	ASST	3 cut(s)	25, 101, 197
SfaNI	GCATC	1 cut(s)	106
Sfr274I	CTCGAG	1 cut(s)	196
SlaI	CTCGAG	1 cut(s)	196
SmlI	CTYRAG	1 cut(s)	196
SmoI	CTYRAG	1 cut(s)	196
SpeI	ACTAGT	1 cut(s)	131
Sse9I	AATT	2 cut(s)	10, 208
SsiI	CCGC	4 cut(s)	90, 119, 122, 201
SspMI	CTAG	1 cut(s)	132
StyD4I	CCNGG	1 cut(s)	29
TaaI	ACNGT	1 cut(s)	113
TaqI	TCGA	1 cut(s)	197
TasI	AATT	2 cut(s)	10, 208
TatI	WGTACW	2 cut(s)	45, 51
TauI	GCSGC	1 cut(s)	122
Tru1I	TTAA	1 cut(s)	207
Tru9I	TTAA	1 cut(s)	207
TseI	GCWGC	2 cut(s)	165, 187
XhoI	CTCGAG	1 cut(s)	196
XspI	CTAG	1 cut(s)	132
ZrmI	AGTACT	1 cut(s)	47

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.