RchiOBHm_Chr6g0260081

Belongs to the AAA ATPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0002427
Physical Location & Seq
Forward (+)
15182300 .. 15182698
399 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ23322

Sequence Viewer

Length: 312 bp
ATGTATAGCAATTTCAAGAAGGCTATTACCCAGATATTCAACGAGTACTTGCACTGGGCTGTGGAGATTCGTATCATTTTGGATTACGACTGGCCCGGCCCGGCCTCCAACGGCGATGCGGTGGTGGTTACCAGTCTAAAGACCAATCCCGAGGACAGTAGAGGCGGCAACGGGGAGGATCCGGAGCAGGCAATGCTCCGAACCAGGCTTAATTTGCCTGTCAAGTTCCTTCAGTTCTTTACTGAGTGCTGGGATTTTTGTTTTAGTTATTGCAGGAACCCCAAAATACCTCAGTTCCCCCGAGATGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0000902 GO:0000904 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005768 GO:0005770 GO:0005771 GO:0005911 GO:0006629 GO:0006810 GO:0006900 GO:0006914 GO:0006996 GO:0007032 GO:0007033 GO:0007034 GO:0008104 GO:0008144 GO:0008150 GO:0008152 GO:0008202 GO:0009056 GO:0009506 GO:0009653 GO:0009888 GO:0009987 GO:0010008 GO:0010026 GO:0010090 GO:0010091 GO:0010256 GO:0012505 GO:0016020 GO:0016043 GO:0016050 GO:0016125 GO:0016192 GO:0016197 GO:0016236 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0022607 GO:0030054 GO:0030154 GO:0030554 GO:0031090 GO:0031410 GO:0031982 GO:0032502 GO:0032507 GO:0032509 GO:0032511 GO:0032553 GO:0032555 GO:0032559 GO:0032989 GO:0032991 GO:0033036 GO:0033365 GO:0034067 GO:0034613 GO:0035639 GO:0036094 GO:0036452 GO:0042592 GO:0042802 GO:0042803 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045053 GO:0045185 GO:0045324 GO:0046907 GO:0046983 GO:0048468 GO:0048856 GO:0048869 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0051235 GO:0051259 GO:0051260 GO:0051641 GO:0051649 GO:0051651 GO:0055044 GO:0055065 GO:0055067 GO:0055075 GO:0055078 GO:0055080 GO:0061024 GO:0061919 GO:0065003 GO:0065007 GO:0065008 GO:0070676 GO:0070727 GO:0071704 GO:0071840 GO:0071985 GO:0090558 GO:0090626 GO:0097159 GO:0097367 GO:0097708 GO:0098588 GO:0098771 GO:0098796 GO:0098805 GO:1901265 GO:1901360 GO:1901363 GO:1901615 GO:1902494 GO:1904949 GO:1990621
KEGG Pathways
Metabolic & Signaling
ko04144 ko04217 map04144 map04217
Pfam Domains
Protein Families
AAA MIT Vps4_C

Protein Analysis

103

Amino Acids

12.04

Weight (kDa)

5.11

Isoelectric Point (pI)

37.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 181
AciI CCGC 2 cut(s) 119, 165
AclWI GGATC 2 cut(s) 173, 186
AcuI CTGAAG 1 cut(s) 215
AfaI GTAC 1 cut(s) 47
AgsI TTSAA 2 cut(s) 16, 40
AjnI CCWGG 1 cut(s) 203
AlwI GGATC 2 cut(s) 173, 186
Ama87I CYCGRG 2 cut(s) 149, 300
Aor13HI TCCGGA 1 cut(s) 181
AoxI GGCC 3 cut(s) 92, 97, 102
AspS9I GGNCC 2 cut(s) 93, 98
AsuC2I CCSGG 2 cut(s) 96, 101
AvaI CYCGRG 2 cut(s) 149, 300
BamHI GGATCC 1 cut(s) 178
BceAI ACGGC 1 cut(s) 127
BciT130I CCWGG 1 cut(s) 205
BcnI CCSGG 2 cut(s) 96, 101
BisI GCNGC 1 cut(s) 166
BlsI GCNGC 1 cut(s) 167
BmcAI AGTACT 1 cut(s) 47
Bme1390I CCNGG 3 cut(s) 96, 101, 205
BmeT110I CYCGRG 2 cut(s) 149, 300
BmgT120I GGNCC 2 cut(s) 93, 98
BmiI GGNNCC 2 cut(s) 180, 278
BmrFI CCNGG 3 cut(s) 96, 101, 205
BmrI ACTGGG 1 cut(s) 64
BmsI GCATC 1 cut(s) 106
BmuI ACTGGG 1 cut(s) 64
BpuMI CCSGG 2 cut(s) 96, 101
BsaBI GATNNNNATC 1 cut(s) 71
BsaJI CCNNGG 1 cut(s) 150
BsaWI WCCGGW 1 cut(s) 181
Bse1I ACTGG 3 cut(s) 59, 95, 132
Bse3DI GCAATG 1 cut(s) 198
Bse8I GATNNNNATC 1 cut(s) 71
BseAI TCCGGA 1 cut(s) 181
BseBI CCWGG 1 cut(s) 205
BseDI CCNNGG 1 cut(s) 150
BseJI GATNNNNATC 1 cut(s) 71
BseMI GCAATG 1 cut(s) 198
BseMII CTCAG 2 cut(s) 234, 305
BseNI ACTGG 3 cut(s) 59, 95, 132
BseYI CCCAGC 1 cut(s) 249
BshFI GGCC 3 cut(s) 94, 99, 104
BsiHKCI CYCGRG 2 cut(s) 149, 300
BsiSI CCGG 3 cut(s) 96, 101, 182
BsnI GGCC 3 cut(s) 94, 99, 104
BsoBI CYCGRG 2 cut(s) 149, 300
Bsp13I TCCGGA 1 cut(s) 181
Bsp143I GATC 1 cut(s) 178
BspACI CCGC 2 cut(s) 119, 165
BspANI GGCC 3 cut(s) 94, 99, 104
BspCNI CTCAG 2 cut(s) 235, 304
BspEI TCCGGA 1 cut(s) 181
BspLI GGNNCC 2 cut(s) 180, 278
BspPI GGATC 2 cut(s) 173, 186
BsrDI GCAATG 1 cut(s) 198
BsrI ACTGG 3 cut(s) 59, 95, 132
BssECI CCNNGG 1 cut(s) 150
BssMI GATC 1 cut(s) 178
Bst2UI CCWGG 1 cut(s) 205
Bst4CI ACNGT 1 cut(s) 158
BstAPI GCANNNNNTGC 1 cut(s) 193
BstC8I GCNNGC 1 cut(s) 189
BstDEI CTNAG 2 cut(s) 243, 291
BstEII GGTNACC 1 cut(s) 127
BstKTI GATC 1 cut(s) 181
BstMBI GATC 1 cut(s) 178
BstMWI GCNNNNNNNGC 2 cut(s) 193, 214
BstNI CCWGG 1 cut(s) 205
BstPI GGTNACC 1 cut(s) 127
BstSCI CCNGG 3 cut(s) 94, 99, 203
BstX2I RGATCY 1 cut(s) 178
BstYI RGATCY 1 cut(s) 178
BsuRI GGCC 3 cut(s) 94, 99, 104
BtgZI GCGATG 1 cut(s) 129
BtsIMutI CAGTG 1 cut(s) 52
Cac8I GCNNGC 1 cut(s) 189
Cfr13I GGNCC 2 cut(s) 93, 98
Csp6I GTAC 1 cut(s) 46
CviJI RGCY 6 cut(s) 23, 59, 94, 99, 104, 208
CviKI_1 RGCY 6 cut(s) 23, 59, 94, 99, 104, 208
CviQI GTAC 1 cut(s) 46
DdeI CTNAG 2 cut(s) 243, 291
DpnI GATC 1 cut(s) 180
DpnII GATC 1 cut(s) 178
Eco57I CTGAAG 1 cut(s) 215
Eco88I CYCGRG 2 cut(s) 149, 300
Eco91I GGTNACC 1 cut(s) 127
EcoO65I GGTNACC 1 cut(s) 127
EcoRII CCWGG 1 cut(s) 203
FaiI YATR 1 cut(s) 6
Fnu4HI GCNGC 1 cut(s) 166
Fsp4HI GCNGC 1 cut(s) 166
GluI GCNGC 1 cut(s) 166
GsaI CCCAGC 1 cut(s) 253
HaeIII GGCC 3 cut(s) 94, 99, 104
HapII CCGG 3 cut(s) 96, 101, 182
HinfI GANTC 1 cut(s) 67
HpaII CCGG 3 cut(s) 96, 101, 182
Hpy188I TCNGA 1 cut(s) 200
Hpy188III TCNNGA 3 cut(s) 16, 149, 182
HpyAV CCTTC 2 cut(s) 13, 239
HpyCH4III ACNGT 1 cut(s) 158
HpyCH4V TGCA 2 cut(s) 52, 273
HpyF10VI GCNNNNNNNGC 2 cut(s) 193, 214
HpyF3I CTNAG 2 cut(s) 243, 291
Kpn2I TCCGGA 1 cut(s) 181
Kzo9I GATC 1 cut(s) 178
LmnI GCTCC 2 cut(s) 184, 201
LweI GCATC 1 cut(s) 106
MaeIII GTNAC 1 cut(s) 127
MalI GATC 1 cut(s) 180
MboI GATC 1 cut(s) 178
MflI RGATCY 1 cut(s) 178
MluCI AATT 2 cut(s) 10, 211
MmeI TCCRAC 1 cut(s) 132
MnlI CCTC 5 cut(s) 115, 145, 155, 169, 300
MroI TCCGGA 1 cut(s) 181
MseI TTAA 1 cut(s) 210
MspI CCGG 3 cut(s) 96, 101, 182
MspR9I CCNGG 3 cut(s) 96, 101, 205
MvaI CCWGG 1 cut(s) 205
MwoI GCNNNNNNNGC 2 cut(s) 193, 214
NciI CCSGG 2 cut(s) 96, 101
NdeII GATC 1 cut(s) 178
NlaIV GGNNCC 2 cut(s) 180, 278
PfeI GAWTC 1 cut(s) 67
PkrI GCNGC 1 cut(s) 167
Psp6I CCWGG 1 cut(s) 203
PspEI GGTNACC 1 cut(s) 127
PspFI CCCAGC 1 cut(s) 249
PspGI CCWGG 1 cut(s) 203
PspN4I GGNNCC 2 cut(s) 180, 278
PspPI GGNCC 2 cut(s) 93, 98
PsuI RGATCY 1 cut(s) 178
RsaI GTAC 1 cut(s) 47
RsaNI GTAC 1 cut(s) 46
SaqAI TTAA 1 cut(s) 210
SatI GCNGC 1 cut(s) 166
Sau3AI GATC 1 cut(s) 178
Sau96I GGNCC 2 cut(s) 93, 98
ScaI AGTACT 1 cut(s) 47
ScrFI CCNGG 3 cut(s) 96, 101, 205
SetI ASST 1 cut(s) 292
SfaNI GCATC 1 cut(s) 106
Sse9I AATT 2 cut(s) 10, 211
SsiI CCGC 2 cut(s) 119, 165
StyD4I CCNGG 3 cut(s) 94, 99, 203
TaaI ACNGT 1 cut(s) 158
TasI AATT 2 cut(s) 10, 211
TatI WGTACW 1 cut(s) 45
TauI GCSGC 1 cut(s) 168
TfiI GAWTC 1 cut(s) 67
Tru1I TTAA 1 cut(s) 210
Tru9I TTAA 1 cut(s) 210
TscAI CASTG 1 cut(s) 59
TspRI CASTG 1 cut(s) 59
ZrmI AGTACT 1 cut(s) 47
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.