Rw5G027360

Belongs to the AAA ATPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0002427
Physical Location & Seq
Reverse (-)
40342739 .. 40347418
4680 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G027360.1

Sequence Viewer

Length: 1281 bp
ATGTATAGCAATTTCAAAGAGCAGGCTATAGAGTACGTGAAGCAAGCCGTCCATGAAGACAACAATGGAAACTACGCAAAGGCCTTTCCTTTGTACATGAACGCTCTCGAGTACTTCAAGACCCACCTCAAGTACGAGAAGAACCCTAAGATCAAGGAGGCTATTACCCAGAAATTCACCGAGTACTTGCGCCGGGCCGAGGAGATTCGGGCCGTTTTGGACGACGGCGGCCCCGGCCCGGCCTCCAACGGCGACGCGGCGGTCGCGACCAGGCCCAAGACCAAGCCCAAGGACGGGGAAGGCGGCGACGGGGAGGATCCGGAGCAGGCCAAGCTCCGGGCTGGGCTTAATTCGGCGATTATTAGGGAAAAGCCCAATGTCAAGTGGAATGACGTGGCGGGTCTCGAGAGCGCCAAGCAGGCTTTGCAAGAGGCCGTGATATTGCCCGTCAAGTTCCCTCAGTTCTTTACTGGCAAGAGACGACCATGGAGGGCTTTTCTATTGTATGGTCCTCCTGGAACTGGAAAGTCTTACTTGGCCAAGGCTGTTGCAACTGAAGCTGACTCCACATTTTTCAGTATTTCCTCTTCAGACCTGGTTTCAAAGTGGATGGGTGAGAGTGAGAAGCTAGTTTCAAACCTTTTCCAAATGGCTCGAGATAGTGCCCCATCCATCATCTTCGTTGATGAAATTGATTCCTTATGTGGGACGCGTGGAGAAGGCAATGAGAGTGAAGCTTCTAGACGAATCAAGACAGAACTTCTTGTGCAGATGCAGGGTGTGGGAACCAATGACCAAAAAGTTCTTGTTCTTGCAGCGACAAATACTCCCTATGCATTAGACCAGGCCATTCGAAGACGTTTTGACAAGCGTATTTACATTCCCCTTCCAGATGTAAAGGTCCACTTGGGAGATACTCCTCACAACTTGACAGAAAGTGATTTTGAAAGCTTAGCTTTCAAAACTGAGGGATTTTCGGGTTCAGATATTTCTGTTTGTGTCAAGGATGTTCTTTTTGAACCTGTACGCAAAACACAAGATGCCATGTTCTTTTTCAAGAATTCTGATAATATGTTCATACCTTGTGGACCAAAGCAACCGGGTGCTGTCCAAATCACCATGCAGGAGTTGGCAGCTCAAGGACTAGCTTCACAGATCCTTCCACCTCCCATCACAAAAACAGATTTTGATAAGGTACTTGCTAGACAGAGGCCTACTGTGAGCAAAGGGGACCTTGAAGTCCATGAAAGGTTCACGAAAGAATTTGGAGAGGAAGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0000902 GO:0000904 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005768 GO:0005770 GO:0005771 GO:0005911 GO:0006629 GO:0006810 GO:0006900 GO:0006914 GO:0006996 GO:0007032 GO:0007033 GO:0007034 GO:0008104 GO:0008144 GO:0008150 GO:0008152 GO:0008202 GO:0009056 GO:0009506 GO:0009653 GO:0009888 GO:0009987 GO:0010008 GO:0010026 GO:0010090 GO:0010091 GO:0010256 GO:0012505 GO:0016020 GO:0016043 GO:0016050 GO:0016125 GO:0016192 GO:0016197 GO:0016236 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0022607 GO:0030054 GO:0030154 GO:0030554 GO:0031090 GO:0031410 GO:0031982 GO:0032502 GO:0032507 GO:0032509 GO:0032511 GO:0032553 GO:0032555 GO:0032559 GO:0032989 GO:0032991 GO:0033036 GO:0033365 GO:0034067 GO:0034613 GO:0035639 GO:0036094 GO:0036452 GO:0042592 GO:0042802 GO:0042803 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045053 GO:0045185 GO:0045324 GO:0046907 GO:0046983 GO:0048468 GO:0048856 GO:0048869 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0051235 GO:0051259 GO:0051260 GO:0051641 GO:0051649 GO:0051651 GO:0055044 GO:0055065 GO:0055067 GO:0055075 GO:0055078 GO:0055080 GO:0061024 GO:0061919 GO:0065003 GO:0065007 GO:0065008 GO:0070676 GO:0070727 GO:0071704 GO:0071840 GO:0071985 GO:0090558 GO:0090626 GO:0097159 GO:0097367 GO:0097708 GO:0098588 GO:0098771 GO:0098796 GO:0098805 GO:1901265 GO:1901360 GO:1901363 GO:1901615 GO:1902494 GO:1904949 GO:1990621
KEGG Pathways
Metabolic & Signaling
ko04144 ko04217 map04144 map04217
Pfam Domains
Protein Families
AAA MIT Vps4_C

Protein Analysis

426

Amino Acids

47.33

Weight (kDa)

6.1

Isoelectric Point (pI)

39.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MIT PF04212 7 - 70 2.2e-21 MIT (microtubule interacting and transport) domain
AAA PF00004 167 - 296 2.2e-43 ATPase family associated with various cellular activities (AAA)
AAA_lid_3 PF17862 314 - 347 4.9e-06 AAA+ lid domain
Vps4_C PF09336 360 - 423 6.5e-22 Vps4 C terminal oligomerisation domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 260, 1238
AccII CGCG 3 cut(s) 257, 266, 712
AccIII TCCGGA 1 cut(s) 319
AciI CCGC 5 cut(s) 228, 257, 260, 303, 398
AclWI GGATC 3 cut(s) 311, 324, 1150
AcoI YGGCCR 1 cut(s) 537
AcsI RAATTY 3 cut(s) 173, 1060, 1262
AcuI CTGAAG 2 cut(s) 573, 576
AfaI GTAC 7 cut(s) 35, 95, 113, 134, 185, 1026, 1197
AfiI CCNNNNNNNGG 7 cut(s) 199, 238, 293, 294, 336, 521, 705
AflIII ACRYGT 1 cut(s) 710
AgsI TTSAA 9 cut(s) 16, 118, 603, 636, 947, 961, 1019, 1057, 1238
AjiI CACGTC 1 cut(s) 394
AjnI CCWGG 4 cut(s) 269, 514, 594, 843
AluBI AGCT 8 cut(s) 334, 560, 628, 737, 951, 956, 1136, 1148
AluI AGCT 8 cut(s) 334, 560, 628, 737, 951, 956, 1136, 1148
Alw26I GTCTC 2 cut(s) 407, 472
AlwI GGATC 3 cut(s) 311, 324, 1150
Ama87I CYCGRG 3 cut(s) 107, 404, 654
Aor13HI TCCGGA 1 cut(s) 319
ApeKI GCWGC 2 cut(s) 815, 1133
ApoI RAATTY 3 cut(s) 173, 1060, 1262
AspLEI GCGC 2 cut(s) 192, 413
AspS9I GGNCC 9 cut(s) 195, 210, 230, 236, 273, 509, 901, 1088, 1231
AsuC2I CCSGG 5 cut(s) 194, 234, 239, 338, 1101
AsuHPI GGTGA 3 cut(s) 169, 626, 1108
AsuII TTCGAA 1 cut(s) 853
AvaI CYCGRG 3 cut(s) 107, 404, 654
AvaII GGWCC 4 cut(s) 509, 901, 1088, 1231
BaeGI GKGCMC 1 cut(s) 667
BalI TGGCCA 1 cut(s) 539
BamHI GGATCC 1 cut(s) 316
BarI GAAGNNNNNNTAC 2 cut(s) 571, 603
BbsI GAAGAC 2 cut(s) 63, 862
BbvI GCAGC 2 cut(s) 827, 1145
BccI CCATC 4 cut(s) 604, 676, 680, 1178
BceAI ACGGC 5 cut(s) 32, 197, 241, 265, 419
BciT130I CCWGG 4 cut(s) 271, 516, 596, 845
BcnI CCSGG 5 cut(s) 194, 234, 239, 338, 1101
BcoDI GTCTC 2 cut(s) 407, 472
BfaI CTAG 4 cut(s) 629, 741, 1145, 1203
BfmI CTRYAG 1 cut(s) 27
BfoI RGCGCY 1 cut(s) 414
BglI GCCNNNNNGGC 1 cut(s) 419
BisI GCNGC 5 cut(s) 229, 258, 304, 816, 1134
BlpI GCTNAGC 1 cut(s) 952
BlsI GCNGC 5 cut(s) 230, 259, 305, 817, 1135
BmcAI AGTACT 2 cut(s) 113, 185
Bme1390I CCNGG 9 cut(s) 194, 234, 239, 271, 338, 516, 596, 845, 1101
Bme18I GGWCC 4 cut(s) 509, 901, 1088, 1231
BmeT110I CYCGRG 3 cut(s) 107, 404, 654
BmgBI CACGTC 1 cut(s) 394
BmgT120I GGNCC 9 cut(s) 195, 210, 230, 236, 273, 509, 901, 1088, 1231
BmiI GGNNCC 4 cut(s) 232, 318, 787, 1232
BmrFI CCNGG 9 cut(s) 194, 234, 239, 271, 338, 516, 596, 845, 1101
BmsI GCATC 2 cut(s) 762, 1030
BpiI GAAGAC 2 cut(s) 63, 862
Bpu1102I GCTNAGC 1 cut(s) 952
Bpu14I TTCGAA 1 cut(s) 853
BpuEI CTTGAG 2 cut(s) 113, 1122
BpuMI CCSGG 5 cut(s) 194, 234, 239, 338, 1101
BsaAI YACGTR 1 cut(s) 37
BsaI GGTCTC 1 cut(s) 407
BsaJI CCNNGG 5 cut(s) 198, 232, 288, 485, 540
BsaWI WCCGGW 1 cut(s) 319
BsaXI ACNNNNNCTCC 2 cut(s) 811, 841
Bsc4I CCNNNNNNNGG 7 cut(s) 199, 238, 293, 294, 336, 521, 705
Bse1I ACTGG 2 cut(s) 475, 526
Bse3DI GCAATG 1 cut(s) 730
BseAI TCCGGA 1 cut(s) 319
BseBI CCWGG 4 cut(s) 271, 516, 596, 845
BseDI CCNNGG 5 cut(s) 198, 232, 288, 485, 540
BseGI GGATG 3 cut(s) 615, 668, 1012
BseLI CCNNNNNNNGG 7 cut(s) 199, 238, 293, 294, 336, 521, 705
BseMI GCAATG 1 cut(s) 730
BseMII CTCAG 2 cut(s) 473, 957
BseNI ACTGG 2 cut(s) 475, 526
BseRI GAGGAG 2 cut(s) 215, 909
BseSI GKGCMC 1 cut(s) 667
BseXI GCAGC 2 cut(s) 827, 1145
BseYI CCCAGC 1 cut(s) 341
BsgI GTGCAG 1 cut(s) 788
Bsh1236I CGCG 3 cut(s) 257, 266, 712
Bsh1285I CGRYCG 1 cut(s) 264
BsiEI CGRYCG 1 cut(s) 264
BsiHKCI CYCGRG 3 cut(s) 107, 404, 654
BsiSI CCGG 6 cut(s) 193, 234, 239, 320, 337, 1100
BslFI GGGAC 2 cut(s) 721, 1244
BslI CCNNNNNNNGG 7 cut(s) 199, 238, 293, 294, 336, 521, 705
BsmAI GTCTC 2 cut(s) 407, 472
BsmBI CGTCTC 1 cut(s) 472
BsmFI GGGAC 2 cut(s) 721, 1244
Bso31I GGTCTC 1 cut(s) 407
BsoBI CYCGRG 3 cut(s) 107, 404, 654
Bsp119I TTCGAA 1 cut(s) 853
Bsp1286I GDGCHC 1 cut(s) 667
Bsp13I TCCGGA 1 cut(s) 319
Bsp1407I TGTACA 1 cut(s) 93
Bsp143I GATC 3 cut(s) 150, 316, 1155
Bsp1720I GCTNAGC 1 cut(s) 952
Bsp19I CCATGG 1 cut(s) 485
Bsp68I TCGCGA 1 cut(s) 266
BspACI CCGC 5 cut(s) 228, 257, 260, 303, 398
BspCNI CTCAG 2 cut(s) 472, 958
BspEI TCCGGA 1 cut(s) 319
BspFNI CGCG 3 cut(s) 257, 266, 712
BspLI GGNNCC 4 cut(s) 232, 318, 787, 1232
BspPI GGATC 3 cut(s) 311, 324, 1150
BspT104I TTCGAA 1 cut(s) 853
BspTNI GGTCTC 1 cut(s) 407
BsrDI GCAATG 1 cut(s) 730
BsrGI TGTACA 1 cut(s) 93
BsrI ACTGG 2 cut(s) 475, 526
BssECI CCNNGG 5 cut(s) 198, 232, 288, 485, 540
BssMI GATC 3 cut(s) 150, 316, 1155
BssT1I CCWWGG 3 cut(s) 288, 485, 540
Bst2UI CCWGG 4 cut(s) 271, 516, 596, 845
Bst4CI ACNGT 1 cut(s) 1219
Bst6I CTCTTC 1 cut(s) 592
BstAPI GCANNNNNTGC 1 cut(s) 424
BstAUI TGTACA 1 cut(s) 93
BstBAI YACGTR 1 cut(s) 37
BstBI TTCGAA 1 cut(s) 853
BstC8I GCNNGC 4 cut(s) 24, 45, 327, 420
BstDEI CTNAG 4 cut(s) 147, 459, 952, 966
BstDSI CCRYGG 1 cut(s) 485
BstF5I GGATG 3 cut(s) 615, 668, 1012
BstFNI CGCG 3 cut(s) 257, 266, 712
BstH2I RGCGCY 1 cut(s) 414
BstHHI GCGC 2 cut(s) 192, 413
BstKTI GATC 3 cut(s) 153, 319, 1158
BstMAI GTCTC 2 cut(s) 407, 472
BstMBI GATC 3 cut(s) 150, 316, 1155
BstMCI CGRYCG 1 cut(s) 264
BstMWI GCNNNNNNNGC 6 cut(s) 234, 263, 331, 419, 424, 557
BstNI CCWGG 4 cut(s) 271, 516, 596, 845
BstSCI CCNGG 9 cut(s) 192, 232, 237, 269, 336, 514, 594, 843, 1099
BstSFI CTRYAG 1 cut(s) 27
BstSLI GKGCMC 1 cut(s) 667
BstUI CGCG 3 cut(s) 257, 266, 712
BstV1I GCAGC 2 cut(s) 827, 1145
BstV2I GAAGAC 2 cut(s) 63, 862
BstX2I RGATCY 2 cut(s) 316, 1155
BstYI RGATCY 2 cut(s) 316, 1155
BtgI CCRYGG 1 cut(s) 485
BtrI CACGTC 1 cut(s) 394
BtsCI GGATG 3 cut(s) 615, 668, 1012
BtuMI TCGCGA 1 cut(s) 266
Cac8I GCNNGC 4 cut(s) 24, 45, 327, 420
CfoI GCGC 2 cut(s) 192, 413
Cfr13I GGNCC 9 cut(s) 195, 210, 230, 236, 273, 509, 901, 1088, 1231
CseI GACGC 2 cut(s) 263, 718
CsiI ACCWGGT 1 cut(s) 594
Csp6I GTAC 7 cut(s) 34, 94, 112, 133, 184, 1025, 1196
CviAII CATG 6 cut(s) 53, 97, 486, 1045, 1120, 1244
CviQI GTAC 7 cut(s) 34, 94, 112, 133, 184, 1025, 1196
DdeI CTNAG 4 cut(s) 147, 459, 952, 966
DpnI GATC 3 cut(s) 152, 318, 1157
DpnII GATC 3 cut(s) 150, 316, 1155
DrdI GACNNNNNNGTC 2 cut(s) 260, 1238
DseDI GACNNNNNNGTC 2 cut(s) 260, 1238
EaeI YGGCCR 1 cut(s) 537
Eam1104I CTCTTC 1 cut(s) 592
EarI CTCTTC 1 cut(s) 592
Eco130I CCWWGG 3 cut(s) 288, 485, 540
Eco147I AGGCCT 2 cut(s) 83, 1213
Eco31I GGTCTC 1 cut(s) 407
Eco47I GGWCC 4 cut(s) 509, 901, 1088, 1231
Eco57I CTGAAG 2 cut(s) 573, 576
Eco88I CYCGRG 3 cut(s) 107, 404, 654
EcoO109I RGGNCCY 1 cut(s) 1231
EcoRI GAATTC 1 cut(s) 1060
EcoRII CCWGG 4 cut(s) 269, 514, 594, 843
EcoT14I CCWWGG 3 cut(s) 288, 485, 540
EcoT22I ATGCAT 1 cut(s) 838
ErhI CCWWGG 3 cut(s) 288, 485, 540
Esp3I CGTCTC 1 cut(s) 472
FaeI CATG 6 cut(s) 56, 100, 489, 1048, 1123, 1247
FalI AAGNNNNNCTT 8 cut(s) 518, 550, 890, 922, 940, 972, 1218, 1250
FaqI GGGAC 2 cut(s) 721, 1244
FatI CATG 6 cut(s) 52, 96, 485, 1044, 1119, 1243
FauI CCCGC 1 cut(s) 391
Fnu4HI GCNGC 5 cut(s) 229, 258, 304, 816, 1134
FokI GGATG 3 cut(s) 622, 655, 1019
Fsp4HI GCNGC 5 cut(s) 229, 258, 304, 816, 1134
FspBI CTAG 4 cut(s) 629, 741, 1145, 1203
GlaI GCGC 2 cut(s) 191, 412
GluI GCNGC 5 cut(s) 229, 258, 304, 816, 1134
GsaI CCCAGC 1 cut(s) 345
HaeII RGCGCY 1 cut(s) 414
HapII CCGG 6 cut(s) 193, 234, 239, 320, 337, 1100
HgaI GACGC 2 cut(s) 263, 718
HhaI GCGC 2 cut(s) 192, 413
Hin1II CATG 6 cut(s) 56, 100, 489, 1048, 1123, 1247
Hin6I GCGC 2 cut(s) 190, 411
HinP1I GCGC 2 cut(s) 190, 411
HindIII AAGCTT 2 cut(s) 735, 949
HinfI GANTC 4 cut(s) 205, 563, 695, 747
HpaII CCGG 6 cut(s) 193, 234, 239, 320, 337, 1100
HphI GGTGA 3 cut(s) 169, 626, 1108
Hpy166II GTNNAC 3 cut(s) 904, 1088, 1254
Hpy188I TCNGA 3 cut(s) 592, 985, 1066
Hpy8I GTNNAC 3 cut(s) 904, 1088, 1254
Hpy99I CGWCG 3 cut(s) 227, 257, 311
HpyAV CCTTC 5 cut(s) 293, 713, 896, 1169, 1268
HpyCH4III ACNGT 1 cut(s) 1219
HpyCH4IV ACGT 3 cut(s) 36, 393, 859
HpyCH4V TGCA 7 cut(s) 427, 551, 769, 775, 815, 836, 1123
HpyF10VI GCNNNNNNNGC 6 cut(s) 234, 263, 331, 419, 424, 557
HpyF3I CTNAG 4 cut(s) 147, 459, 952, 966
HpySE526I ACGT 3 cut(s) 36, 393, 859
Hsp92II CATG 6 cut(s) 56, 100, 489, 1048, 1123, 1247
HspAI GCGC 2 cut(s) 190, 411
Kpn2I TCCGGA 1 cut(s) 319
Kzo9I GATC 3 cut(s) 150, 316, 1155
LmnI GCTCC 2 cut(s) 322, 339
Lsp1109I GCAGC 2 cut(s) 827, 1145
LweI GCATC 2 cut(s) 762, 1030
MabI ACCWGGT 1 cut(s) 594
MaeI CTAG 4 cut(s) 629, 741, 1145, 1203
MaeII ACGT 3 cut(s) 36, 393, 859
MalI GATC 3 cut(s) 152, 318, 1157
MboI GATC 3 cut(s) 150, 316, 1155
MboII GAAGA 5 cut(s) 68, 151, 579, 670, 867
MflI RGATCY 2 cut(s) 316, 1155
MhlI GDGCHC 1 cut(s) 667
MlsI TGGCCA 1 cut(s) 539
MluCI AATT 6 cut(s) 10, 173, 349, 690, 1060, 1262
MluI ACGCGT 1 cut(s) 710
MluNI TGGCCA 1 cut(s) 539
MlyI GAGTC 1 cut(s) 557
MmeI TCCRAC 1 cut(s) 270
Mox20I TGGCCA 1 cut(s) 539
Mph1103I ATGCAT 1 cut(s) 838
MroI TCCGGA 1 cut(s) 319
MscI TGGCCA 1 cut(s) 539
MseI TTAA 1 cut(s) 348
Msp20I TGGCCA 1 cut(s) 539
MspI CCGG 6 cut(s) 193, 234, 239, 320, 337, 1100
MspR9I CCNGG 9 cut(s) 194, 234, 239, 271, 338, 516, 596, 845, 1101
MvaI CCWGG 4 cut(s) 271, 516, 596, 845
MvnI CGCG 3 cut(s) 257, 266, 712
MwoI GCNNNNNNNGC 6 cut(s) 234, 263, 331, 419, 424, 557
NciI CCSGG 5 cut(s) 194, 234, 239, 338, 1101
NcoI CCATGG 1 cut(s) 485
NdeII GATC 3 cut(s) 150, 316, 1155
NlaIII CATG 6 cut(s) 56, 100, 489, 1048, 1123, 1247
NlaIV GGNNCC 4 cut(s) 232, 318, 787, 1232
NmeAIII GCCGAG 1 cut(s) 223
NruI TCGCGA 1 cut(s) 266
NsiI ATGCAT 1 cut(s) 838
NspV TTCGAA 1 cut(s) 853
PaeR7I CTCGAG 3 cut(s) 107, 404, 654
PceI AGGCCT 2 cut(s) 83, 1213
PfeI GAWTC 3 cut(s) 205, 695, 747
PfoI TCCNGGA 1 cut(s) 514
PkrI GCNGC 5 cut(s) 230, 259, 305, 817, 1135
PleI GAGTC 1 cut(s) 557
PpsI GAGTC 1 cut(s) 557
Ppu21I YACGTR 1 cut(s) 37
PpuMI RGGWCCY 1 cut(s) 1231
Psp5II RGGWCCY 1 cut(s) 1231
Psp6I CCWGG 4 cut(s) 269, 514, 594, 843
PspFI CCCAGC 1 cut(s) 341
PspGI CCWGG 4 cut(s) 269, 514, 594, 843
PspN4I GGNNCC 4 cut(s) 232, 318, 787, 1232
PspPI GGNCC 9 cut(s) 195, 210, 230, 236, 273, 509, 901, 1088, 1231
PspPPI RGGWCCY 1 cut(s) 1231
PsuI RGATCY 2 cut(s) 316, 1155
RruI TCGCGA 1 cut(s) 266
RsaI GTAC 7 cut(s) 35, 95, 113, 134, 185, 1026, 1197
RsaNI GTAC 7 cut(s) 34, 94, 112, 133, 184, 1025, 1196
SaqAI TTAA 1 cut(s) 348
SatI GCNGC 5 cut(s) 229, 258, 304, 816, 1134
Sau3AI GATC 3 cut(s) 150, 316, 1155
Sau96I GGNCC 9 cut(s) 195, 210, 230, 236, 273, 509, 901, 1088, 1231
ScaI AGTACT 2 cut(s) 113, 185
SchI GAGTC 1 cut(s) 557
ScrFI CCNGG 9 cut(s) 194, 234, 239, 271, 338, 516, 596, 845, 1101
SduI GDGCHC 1 cut(s) 667
SexAI ACCWGGT 1 cut(s) 594
SfaNI GCATC 2 cut(s) 762, 1030
SfcI CTRYAG 1 cut(s) 27
Sfr274I CTCGAG 3 cut(s) 107, 404, 654
SfuI TTCGAA 1 cut(s) 853
SinI GGWCC 4 cut(s) 509, 901, 1088, 1231
SlaI CTCGAG 3 cut(s) 107, 404, 654
SmlI CTYRAG 5 cut(s) 107, 128, 404, 654, 1137
SmoI CTYRAG 5 cut(s) 107, 128, 404, 654, 1137
Sse9I AATT 6 cut(s) 10, 173, 349, 690, 1060, 1262
SseBI AGGCCT 2 cut(s) 83, 1213
SsiI CCGC 5 cut(s) 228, 257, 260, 303, 398
SspMI CTAG 4 cut(s) 629, 741, 1145, 1203
StuI AGGCCT 2 cut(s) 83, 1213
StyD4I CCNGG 9 cut(s) 192, 232, 237, 269, 336, 514, 594, 843, 1099
StyI CCWWGG 3 cut(s) 288, 485, 540
TaaI ACNGT 1 cut(s) 1219
TaiI ACGT 3 cut(s) 39, 396, 862
TaqI TCGA 4 cut(s) 108, 405, 655, 853
TasI AATT 6 cut(s) 10, 173, 349, 690, 1060, 1262
TatI WGTACW 3 cut(s) 93, 111, 183
TauI GCSGC 3 cut(s) 231, 260, 306
TfiI GAWTC 3 cut(s) 205, 695, 747
Tru1I TTAA 1 cut(s) 348
Tru9I TTAA 1 cut(s) 348
TseI GCWGC 2 cut(s) 815, 1133
TspDTI ATGAA 5 cut(s) 69, 113, 702, 1066, 1260
VpaK11BI GGWCC 4 cut(s) 509, 901, 1088, 1231
XapI RAATTY 3 cut(s) 173, 1060, 1262
XbaI TCTAGA 1 cut(s) 740
XcmI CCANNNNNNNNNTGG 1 cut(s) 1126
XhoI CTCGAG 3 cut(s) 107, 404, 654
XspI CTAG 4 cut(s) 629, 741, 1145, 1203
ZrmI AGTACT 2 cut(s) 113, 185
Zsp2I ATGCAT 1 cut(s) 838
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.