RchiOBHm_Chr6g0255971

Belongs to the AAA ATPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0002427
Physical Location & Seq
Reverse (-)
11385664 .. 11385993
330 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ22959

Sequence Viewer

Length: 243 bp
ATGTATAGCAATTTCAAGAAGGCTATTACCCCAGATATTCACAGTCGGGCTATGGAGATTCGTATCGTTTTGGATGACGACGGTCCCGGCCCGGCCTCCAACGGCGATGCGGCGGTGGTTACCAGTCTGAAGACCAAGCCCGAGGACGGCGAAGGCAGCGGCAAGGAGGATCCGGAGCAGACCAAGCTCCGAGCGGGGCTTAATTTGTCAGTCAAGTTCCCTCAGTTCTTTACTGAGTGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0000902 GO:0000904 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005768 GO:0005770 GO:0005771 GO:0005911 GO:0006629 GO:0006810 GO:0006900 GO:0006914 GO:0006996 GO:0007032 GO:0007033 GO:0007034 GO:0008104 GO:0008144 GO:0008150 GO:0008152 GO:0008202 GO:0009056 GO:0009506 GO:0009653 GO:0009888 GO:0009987 GO:0010008 GO:0010026 GO:0010090 GO:0010091 GO:0010256 GO:0012505 GO:0016020 GO:0016043 GO:0016050 GO:0016125 GO:0016192 GO:0016197 GO:0016236 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0022607 GO:0030054 GO:0030154 GO:0030554 GO:0031090 GO:0031410 GO:0031982 GO:0032502 GO:0032507 GO:0032509 GO:0032511 GO:0032553 GO:0032555 GO:0032559 GO:0032989 GO:0032991 GO:0033036 GO:0033365 GO:0034067 GO:0034613 GO:0035639 GO:0036094 GO:0036452 GO:0042592 GO:0042802 GO:0042803 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045053 GO:0045185 GO:0045324 GO:0046907 GO:0046983 GO:0048468 GO:0048856 GO:0048869 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0051235 GO:0051259 GO:0051260 GO:0051641 GO:0051649 GO:0051651 GO:0055044 GO:0055065 GO:0055067 GO:0055075 GO:0055078 GO:0055080 GO:0061024 GO:0061919 GO:0065003 GO:0065007 GO:0065008 GO:0070676 GO:0070727 GO:0071704 GO:0071840 GO:0071985 GO:0090558 GO:0090626 GO:0097159 GO:0097367 GO:0097708 GO:0098588 GO:0098771 GO:0098796 GO:0098805 GO:1901265 GO:1901360 GO:1901363 GO:1901615 GO:1902494 GO:1904949 GO:1990621
KEGG Pathways
Metabolic & Signaling
ko04144 ko04217 map04144 map04217
Pfam Domains
Protein Families
AAA MIT Vps4_C

Protein Analysis

80

Amino Acids

8.67

Weight (kDa)

4.99

Isoelectric Point (pI)

33.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 194
AccIII TCCGGA 1 cut(s) 172
AciI CCGC 4 cut(s) 110, 113, 159, 194
AclWI GGATC 2 cut(s) 164, 177
AcuI CTGAAG 1 cut(s) 149
AfiI CCNNNNNNNGG 1 cut(s) 146
AgsI TTSAA 1 cut(s) 16
AluBI AGCT 1 cut(s) 187
AluI AGCT 1 cut(s) 187
AlwI GGATC 2 cut(s) 164, 177
Ama87I CYCGRG 1 cut(s) 140
Aor13HI TCCGGA 1 cut(s) 172
AoxI GGCC 2 cut(s) 88, 93
ApeKI GCWGC 1 cut(s) 156
AspS9I GGNCC 2 cut(s) 83, 89
AsuC2I CCSGG 2 cut(s) 87, 92
AvaI CYCGRG 1 cut(s) 140
AvaII GGWCC 1 cut(s) 83
BamHI GGATCC 1 cut(s) 169
BbsI GAAGAC 1 cut(s) 137
BbvI GCAGC 1 cut(s) 168
BceAI ACGGC 2 cut(s) 118, 163
BcnI CCSGG 2 cut(s) 87, 92
BfaI CTAG 1 cut(s) 241
BisI GCNGC 3 cut(s) 111, 157, 160
BlsI GCNGC 3 cut(s) 112, 158, 161
Bme1390I CCNGG 2 cut(s) 87, 92
Bme18I GGWCC 1 cut(s) 83
BmeT110I CYCGRG 1 cut(s) 140
BmgT120I GGNCC 2 cut(s) 83, 89
BmiI GGNNCC 2 cut(s) 85, 171
BmrFI CCNGG 2 cut(s) 87, 92
BmsI GCATC 1 cut(s) 97
BoxI GACNNNNGTC 1 cut(s) 81
BpiI GAAGAC 1 cut(s) 137
BpuMI CCSGG 2 cut(s) 87, 92
BsaBI GATNNNNATC 1 cut(s) 62
BsaJI CCNNGG 1 cut(s) 141
BsaWI WCCGGW 1 cut(s) 172
Bsc4I CCNNNNNNNGG 1 cut(s) 146
Bse1I ACTGG 1 cut(s) 123
Bse8I GATNNNNATC 1 cut(s) 62
BseAI TCCGGA 1 cut(s) 172
BseDI CCNNGG 1 cut(s) 141
BseGI GGATG 1 cut(s) 79
BseJI GATNNNNATC 1 cut(s) 62
BseLI CCNNNNNNNGG 1 cut(s) 146
BseMII CTCAG 2 cut(s) 225, 236
BseNI ACTGG 1 cut(s) 123
BseXI GCAGC 1 cut(s) 168
BshFI GGCC 2 cut(s) 90, 95
BsiHKCI CYCGRG 1 cut(s) 140
BsiSI CCGG 3 cut(s) 87, 92, 173
BslFI GGGAC 1 cut(s) 69
BslI CCNNNNNNNGG 1 cut(s) 146
BsmFI GGGAC 1 cut(s) 69
BsnI GGCC 2 cut(s) 90, 95
BsoBI CYCGRG 1 cut(s) 140
Bsp13I TCCGGA 1 cut(s) 172
Bsp143I GATC 1 cut(s) 169
BspACI CCGC 4 cut(s) 110, 113, 159, 194
BspANI GGCC 2 cut(s) 90, 95
BspCNI CTCAG 2 cut(s) 226, 235
BspEI TCCGGA 1 cut(s) 172
BspLI GGNNCC 2 cut(s) 85, 171
BspPI GGATC 2 cut(s) 164, 177
BsrBI CCGCTC 1 cut(s) 194
BsrI ACTGG 1 cut(s) 123
BssECI CCNNGG 1 cut(s) 141
BssMI GATC 1 cut(s) 169
Bst4CI ACNGT 2 cut(s) 44, 83
BstDEI CTNAG 2 cut(s) 222, 234
BstEII GGTNACC 1 cut(s) 118
BstF5I GGATG 1 cut(s) 79
BstKTI GATC 1 cut(s) 172
BstMBI GATC 1 cut(s) 169
BstMWI GCNNNNNNNGC 2 cut(s) 156, 184
BstPAI GACNNNNGTC 1 cut(s) 81
BstPI GGTNACC 1 cut(s) 118
BstSCI CCNGG 2 cut(s) 85, 90
BstV1I GCAGC 1 cut(s) 168
BstV2I GAAGAC 1 cut(s) 137
BstX2I RGATCY 1 cut(s) 169
BstYI RGATCY 1 cut(s) 169
BsuRI GGCC 2 cut(s) 90, 95
BtgZI GCGATG 1 cut(s) 120
BtsCI GGATG 1 cut(s) 79
Cfr13I GGNCC 2 cut(s) 83, 89
CviJI RGCY 7 cut(s) 23, 50, 90, 95, 139, 187, 199
CviKI_1 RGCY 7 cut(s) 23, 50, 90, 95, 139, 187, 199
DdeI CTNAG 2 cut(s) 222, 234
DpnI GATC 1 cut(s) 171
DpnII GATC 1 cut(s) 169
Eco47I GGWCC 1 cut(s) 83
Eco57I CTGAAG 1 cut(s) 149
Eco88I CYCGRG 1 cut(s) 140
Eco91I GGTNACC 1 cut(s) 118
EcoO65I GGTNACC 1 cut(s) 118
FaiI YATR 2 cut(s) 6, 53
FaqI GGGAC 1 cut(s) 69
FauI CCCGC 1 cut(s) 187
Fnu4HI GCNGC 3 cut(s) 111, 157, 160
FokI GGATG 1 cut(s) 86
Fsp4HI GCNGC 3 cut(s) 111, 157, 160
FspBI CTAG 1 cut(s) 241
GluI GCNGC 3 cut(s) 111, 157, 160
HaeIII GGCC 2 cut(s) 90, 95
HapII CCGG 3 cut(s) 87, 92, 173
HinfI GANTC 1 cut(s) 58
HpaII CCGG 3 cut(s) 87, 92, 173
Hpy188I TCNGA 2 cut(s) 129, 191
Hpy188III TCNNGA 2 cut(s) 16, 173
Hpy99I CGWCG 1 cut(s) 83
HpyAV CCTTC 2 cut(s) 13, 146
HpyCH4III ACNGT 2 cut(s) 44, 83
HpyF10VI GCNNNNNNNGC 2 cut(s) 156, 184
HpyF3I CTNAG 2 cut(s) 222, 234
Kpn2I TCCGGA 1 cut(s) 172
Kzo9I GATC 1 cut(s) 169
LmnI GCTCC 2 cut(s) 175, 192
LpnPI CCDG 5 cut(s) 45, 100, 105, 136, 186
Lsp1109I GCAGC 1 cut(s) 168
LweI GCATC 1 cut(s) 97
MaeI CTAG 1 cut(s) 241
MaeIII GTNAC 1 cut(s) 118
MalI GATC 1 cut(s) 171
MbiI CCGCTC 1 cut(s) 194
MboI GATC 1 cut(s) 169
MboII GAAGA 1 cut(s) 142
MflI RGATCY 1 cut(s) 169
MluCI AATT 2 cut(s) 10, 202
MmeI TCCRAC 1 cut(s) 123
MnlI CCTC 4 cut(s) 106, 136, 160, 231
MroI TCCGGA 1 cut(s) 172
MseI TTAA 1 cut(s) 201
MspA1I CMGCKG 1 cut(s) 159
MspI CCGG 3 cut(s) 87, 92, 173
MspR9I CCNGG 2 cut(s) 87, 92
MwoI GCNNNNNNNGC 2 cut(s) 156, 184
NciI CCSGG 2 cut(s) 87, 92
NdeII GATC 1 cut(s) 169
NlaIV GGNNCC 2 cut(s) 85, 171
PfeI GAWTC 1 cut(s) 58
PkrI GCNGC 3 cut(s) 112, 158, 161
PshAI GACNNNNGTC 1 cut(s) 81
PspEI GGTNACC 1 cut(s) 118
PspN4I GGNNCC 2 cut(s) 85, 171
PspPI GGNCC 2 cut(s) 83, 89
PsuI RGATCY 1 cut(s) 169
SaqAI TTAA 1 cut(s) 201
SatI GCNGC 3 cut(s) 111, 157, 160
Sau3AI GATC 1 cut(s) 169
Sau96I GGNCC 2 cut(s) 83, 89
ScrFI CCNGG 2 cut(s) 87, 92
SetI ASST 1 cut(s) 189
SfaNI GCATC 1 cut(s) 97
SinI GGWCC 1 cut(s) 83
Sse9I AATT 2 cut(s) 10, 202
SsiI CCGC 4 cut(s) 110, 113, 159, 194
SspMI CTAG 1 cut(s) 241
StyD4I CCNGG 2 cut(s) 85, 90
TaaI ACNGT 2 cut(s) 44, 83
TasI AATT 2 cut(s) 10, 202
TauI GCSGC 2 cut(s) 113, 162
TfiI GAWTC 1 cut(s) 58
Tru1I TTAA 1 cut(s) 201
Tru9I TTAA 1 cut(s) 201
TseI GCWGC 1 cut(s) 156
VpaK11BI GGWCC 1 cut(s) 83
XspI CTAG 1 cut(s) 241
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.