RchiOBHm_Chr5g0044161

Belongs to the AAA ATPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0002427
Physical Location & Seq
Reverse (-)
39355897 .. 39361604
5708 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ32237

Sequence Viewer

Length: 1302 bp
ATGTATAGCAATTTCAAAGAGCAGGCTATAGAGTACGTGAAGCAAGCCGTCCATGAAGACAACAATGGAAACTACGCAAAGGCCTTTCCTTTGTACATGAACGCTCTCGAGTACTTCAAGACCCACCTCAAGTACGAGAAGAACCCTAAGATCAAGGAGGCTATTACCCAGAAATTCACCGAGTACTTGCGCCGGGCCGAGGAGATTCGGGCCGTTTTGGACGACGGCGGGCCCGGCCCGGCCTCCAACGGCGACGCGGCGGTCGCGACCAGGCCCAAGACCAAGCCCAAGGACGGGGAAGGCGGCGACGGGGAGGATCCGGAGCAGGCCAAGCTCCGGGCTGGGCTTAATTCGGCGATTATTAGGGAAAAGCCCAATGTCAAGTGGAATGATGTGGCGGGTCTCGAGAGCGCCAAGCAGGCTTTGCAAGAGGCCGTGATATTGCCCGTCAAGTTCCCTCAGTTCTTTACTGGCAAGAGACGACCATGGAGGGCTTTTCTATTGTATGGTCCTCCTGGAACTGGAAAGTCTTACTTGGCCAAGGCTGTTGCAACTGAAGCTGACTCCACATTTTTCAGTATTTCCTCTTCAGACCTGGTTTCAAAGTGGATGGGTGAGAGTGAGAAGCTAGTTTCAAACCTTTTCCAAATGGCTCGAGATAGTGCCCCATCCATCATCTTTGTTGATGAAATAGATTCCTTATGTGGGACGCGTGGAGAAGGCAATGAGAGTGAAGCTTCTAGACGAATCAAGACAGAACTTCTTGTGCAGATGCAGGGTGTGGGAACCAATGACCAAAAAGTTCTTGTTCTTGCAGCGACAAATACTCCCTATGCATTAGACCAGGCCATTCGAAGACGTTTTGACAAGCGTATTTACATTCCCCTTCCAGATGTAAAGGCTCGACAGCATATGTTCAAAGTCCACTTGGGAGATACTCCTCACAACTTGACAGAAAGTGATTTTGAAAGCTTAGCGTTCAAAACTGAGGGATTTTCGGGTTCAGATATTTCTGTTTGTGTCAAGGATGTTCTTTTTGAACCTGTACGCAAAACACAAGATGCCATGTTCTTTTTCAAGAATTCTGATAATATGTTCATACCTTGTGGACCAAAGCAACCGGGTGCGGTCCAAATCACCATGCAGGAGTTGGCAGCTCAAGGACTAGCTTCACAGATCCTTCCACCTCCCATCACAAAAACAGATTTTGATAAGGTACTTGCTAGACAGAGGCCTACTGTGAGCAAAGGGGACCTTGAAGTCCATGAAAGGTTCACGAAAGAATTTGGAGAGGAAGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0000902 GO:0000904 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005768 GO:0005770 GO:0005771 GO:0005911 GO:0006629 GO:0006810 GO:0006900 GO:0006914 GO:0006996 GO:0007032 GO:0007033 GO:0007034 GO:0008104 GO:0008144 GO:0008150 GO:0008152 GO:0008202 GO:0009056 GO:0009506 GO:0009653 GO:0009888 GO:0009987 GO:0010008 GO:0010026 GO:0010090 GO:0010091 GO:0010256 GO:0012505 GO:0016020 GO:0016043 GO:0016050 GO:0016125 GO:0016192 GO:0016197 GO:0016236 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0022607 GO:0030054 GO:0030154 GO:0030554 GO:0031090 GO:0031410 GO:0031982 GO:0032502 GO:0032507 GO:0032509 GO:0032511 GO:0032553 GO:0032555 GO:0032559 GO:0032989 GO:0032991 GO:0033036 GO:0033365 GO:0034067 GO:0034613 GO:0035639 GO:0036094 GO:0036452 GO:0042592 GO:0042802 GO:0042803 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045053 GO:0045185 GO:0045324 GO:0046907 GO:0046983 GO:0048468 GO:0048856 GO:0048869 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0051235 GO:0051259 GO:0051260 GO:0051641 GO:0051649 GO:0051651 GO:0055044 GO:0055065 GO:0055067 GO:0055075 GO:0055078 GO:0055080 GO:0061024 GO:0061919 GO:0065003 GO:0065007 GO:0065008 GO:0070676 GO:0070727 GO:0071704 GO:0071840 GO:0071985 GO:0090558 GO:0090626 GO:0097159 GO:0097367 GO:0097708 GO:0098588 GO:0098771 GO:0098796 GO:0098805 GO:1901265 GO:1901360 GO:1901363 GO:1901615 GO:1902494 GO:1904949 GO:1990621
KEGG Pathways
Metabolic & Signaling
ko04144 ko04217 map04144 map04217
Pfam Domains
Protein Families
AAA MIT Vps4_C

Protein Analysis

433

Amino Acids

48.23

Weight (kDa)

6.65

Isoelectric Point (pI)

39.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MIT PF04212 7 - 70 2.3e-21 MIT (microtubule interacting and transport) domain
AAA PF00004 167 - 296 2.3e-43 ATPase family associated with various cellular activities (AAA)
AAA_lid_3 PF17862 321 - 354 5e-06 AAA+ lid domain
Vps4_C PF09336 367 - 430 6.6e-22 Vps4 C terminal oligomerisation domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 260, 1259
AccII CGCG 3 cut(s) 257, 266, 712
AccIII TCCGGA 1 cut(s) 319
AciI CCGC 6 cut(s) 228, 257, 260, 303, 398, 1127
AclWI GGATC 3 cut(s) 311, 324, 1171
AcoI YGGCCR 1 cut(s) 537
AcsI RAATTY 3 cut(s) 173, 1081, 1283
AcuI CTGAAG 2 cut(s) 573, 576
AfaI GTAC 7 cut(s) 35, 95, 113, 134, 185, 1047, 1218
AfiI CCNNNNNNNGG 6 cut(s) 199, 293, 294, 336, 521, 705
AflIII ACRYGT 1 cut(s) 710
AjnI CCWGG 4 cut(s) 269, 514, 594, 843
AluBI AGCT 7 cut(s) 334, 560, 628, 737, 972, 1157, 1169
AluI AGCT 7 cut(s) 334, 560, 628, 737, 972, 1157, 1169
Alw26I GTCTC 2 cut(s) 407, 472
AlwI GGATC 3 cut(s) 311, 324, 1171
Ama87I CYCGRG 3 cut(s) 107, 404, 654
Aor13HI TCCGGA 1 cut(s) 319
ApaI GGGCCC 1 cut(s) 234
ApeKI GCWGC 2 cut(s) 815, 1154
ApoI RAATTY 3 cut(s) 173, 1081, 1283
AspLEI GCGC 2 cut(s) 192, 413
AsuC2I CCSGG 5 cut(s) 194, 234, 239, 338, 1122
AsuHPI GGTGA 3 cut(s) 169, 626, 1129
AsuII TTCGAA 1 cut(s) 853
AvaI CYCGRG 3 cut(s) 107, 404, 654
AvaII GGWCC 4 cut(s) 509, 1109, 1129, 1252
BaeGI GKGCMC 2 cut(s) 234, 667
BalI TGGCCA 1 cut(s) 539
BamHI GGATCC 1 cut(s) 316
BanII GRGCYC 1 cut(s) 234
BarI GAAGNNNNNNTAC 2 cut(s) 571, 603
BbsI GAAGAC 2 cut(s) 63, 862
BbvI GCAGC 2 cut(s) 827, 1166
BccI CCATC 4 cut(s) 604, 676, 680, 1199
BceAI ACGGC 5 cut(s) 32, 197, 241, 265, 419
BciT130I CCWGG 4 cut(s) 271, 516, 596, 845
BcnI CCSGG 5 cut(s) 194, 234, 239, 338, 1122
BcoDI GTCTC 2 cut(s) 407, 472
BfaI CTAG 4 cut(s) 629, 741, 1166, 1224
BfmI CTRYAG 1 cut(s) 27
BfoI RGCGCY 1 cut(s) 414
BglI GCCNNNNNGGC 1 cut(s) 419
BisI GCNGC 4 cut(s) 258, 304, 816, 1155
BlpI GCTNAGC 1 cut(s) 973
BlsI GCNGC 4 cut(s) 259, 305, 817, 1156
BmcAI AGTACT 2 cut(s) 113, 185
Bme1390I CCNGG 9 cut(s) 194, 234, 239, 271, 338, 516, 596, 845, 1122
Bme18I GGWCC 4 cut(s) 509, 1109, 1129, 1252
BmeT110I CYCGRG 3 cut(s) 107, 404, 654
BmiI GGNNCC 4 cut(s) 232, 318, 787, 1253
BmrFI CCNGG 9 cut(s) 194, 234, 239, 271, 338, 516, 596, 845, 1122
BmsI GCATC 2 cut(s) 762, 1051
BpiI GAAGAC 2 cut(s) 63, 862
Bpu1102I GCTNAGC 1 cut(s) 973
Bpu14I TTCGAA 1 cut(s) 853
BpuEI CTTGAG 2 cut(s) 113, 1143
BpuMI CCSGG 5 cut(s) 194, 234, 239, 338, 1122
BsaAI YACGTR 1 cut(s) 37
BsaI GGTCTC 1 cut(s) 407
BsaJI CCNNGG 4 cut(s) 198, 288, 485, 540
BsaWI WCCGGW 1 cut(s) 319
BsaXI ACNNNNNCTCC 2 cut(s) 811, 841
Bsc4I CCNNNNNNNGG 6 cut(s) 199, 293, 294, 336, 521, 705
Bse1I ACTGG 2 cut(s) 475, 526
Bse3DI GCAATG 1 cut(s) 730
BseAI TCCGGA 1 cut(s) 319
BseBI CCWGG 4 cut(s) 271, 516, 596, 845
BseDI CCNNGG 4 cut(s) 198, 288, 485, 540
BseGI GGATG 3 cut(s) 615, 668, 1033
BseLI CCNNNNNNNGG 6 cut(s) 199, 293, 294, 336, 521, 705
BseMI GCAATG 1 cut(s) 730
BseMII CTCAG 2 cut(s) 473, 978
BseNI ACTGG 2 cut(s) 475, 526
BseRI GAGGAG 2 cut(s) 215, 930
BseSI GKGCMC 2 cut(s) 234, 667
BseXI GCAGC 2 cut(s) 827, 1166
BseYI CCCAGC 1 cut(s) 341
BsgI GTGCAG 1 cut(s) 788
Bsh1236I CGCG 3 cut(s) 257, 266, 712
Bsh1285I CGRYCG 1 cut(s) 264
BsiEI CGRYCG 1 cut(s) 264
BsiHKCI CYCGRG 3 cut(s) 107, 404, 654
BsiSI CCGG 6 cut(s) 193, 234, 239, 320, 337, 1121
BslFI GGGAC 2 cut(s) 721, 1265
BslI CCNNNNNNNGG 6 cut(s) 199, 293, 294, 336, 521, 705
BsmAI GTCTC 2 cut(s) 407, 472
BsmBI CGTCTC 1 cut(s) 472
BsmFI GGGAC 2 cut(s) 721, 1265
Bso31I GGTCTC 1 cut(s) 407
BsoBI CYCGRG 3 cut(s) 107, 404, 654
Bsp119I TTCGAA 1 cut(s) 853
Bsp120I GGGCCC 1 cut(s) 230
Bsp1286I GDGCHC 2 cut(s) 234, 667
Bsp13I TCCGGA 1 cut(s) 319
Bsp1407I TGTACA 1 cut(s) 93
Bsp143I GATC 3 cut(s) 150, 316, 1176
Bsp1720I GCTNAGC 1 cut(s) 973
Bsp19I CCATGG 1 cut(s) 485
Bsp68I TCGCGA 1 cut(s) 266
BspACI CCGC 6 cut(s) 228, 257, 260, 303, 398, 1127
BspCNI CTCAG 2 cut(s) 472, 979
BspEI TCCGGA 1 cut(s) 319
BspFNI CGCG 3 cut(s) 257, 266, 712
BspLI GGNNCC 4 cut(s) 232, 318, 787, 1253
BspPI GGATC 3 cut(s) 311, 324, 1171
BspT104I TTCGAA 1 cut(s) 853
BspTNI GGTCTC 1 cut(s) 407
BsrDI GCAATG 1 cut(s) 730
BsrGI TGTACA 1 cut(s) 93
BsrI ACTGG 2 cut(s) 475, 526
BssECI CCNNGG 4 cut(s) 198, 288, 485, 540
BssMI GATC 3 cut(s) 150, 316, 1176
BssT1I CCWWGG 3 cut(s) 288, 485, 540
Bst2UI CCWGG 4 cut(s) 271, 516, 596, 845
Bst4CI ACNGT 1 cut(s) 1240
Bst6I CTCTTC 1 cut(s) 592
BstAPI GCANNNNNTGC 1 cut(s) 424
BstAUI TGTACA 1 cut(s) 93
BstBAI YACGTR 1 cut(s) 37
BstBI TTCGAA 1 cut(s) 853
BstC8I GCNNGC 5 cut(s) 24, 45, 230, 327, 420
BstDEI CTNAG 4 cut(s) 147, 459, 973, 987
BstDSI CCRYGG 1 cut(s) 485
BstF5I GGATG 3 cut(s) 615, 668, 1033
BstFNI CGCG 3 cut(s) 257, 266, 712
BstH2I RGCGCY 1 cut(s) 414
BstHHI GCGC 2 cut(s) 192, 413
BstKTI GATC 3 cut(s) 153, 319, 1179
BstMAI GTCTC 2 cut(s) 407, 472
BstMBI GATC 3 cut(s) 150, 316, 1176
BstMCI CGRYCG 1 cut(s) 264
BstMWI GCNNNNNNNGC 6 cut(s) 234, 263, 331, 419, 424, 557
BstNI CCWGG 4 cut(s) 271, 516, 596, 845
BstSCI CCNGG 9 cut(s) 192, 232, 237, 269, 336, 514, 594, 843, 1120
BstSFI CTRYAG 1 cut(s) 27
BstSLI GKGCMC 2 cut(s) 234, 667
BstUI CGCG 3 cut(s) 257, 266, 712
BstV1I GCAGC 2 cut(s) 827, 1166
BstV2I GAAGAC 2 cut(s) 63, 862
BstX2I RGATCY 2 cut(s) 316, 1176
BstYI RGATCY 2 cut(s) 316, 1176
BtgI CCRYGG 1 cut(s) 485
BtsCI GGATG 3 cut(s) 615, 668, 1033
BtuMI TCGCGA 1 cut(s) 266
Cac8I GCNNGC 5 cut(s) 24, 45, 230, 327, 420
CfoI GCGC 2 cut(s) 192, 413
CseI GACGC 2 cut(s) 263, 718
CsiI ACCWGGT 1 cut(s) 594
Csp6I GTAC 7 cut(s) 34, 94, 112, 133, 184, 1046, 1217
CviAII CATG 6 cut(s) 53, 97, 486, 1066, 1141, 1265
CviQI GTAC 7 cut(s) 34, 94, 112, 133, 184, 1046, 1217
DdeI CTNAG 4 cut(s) 147, 459, 973, 987
DpnI GATC 3 cut(s) 152, 318, 1178
DpnII GATC 3 cut(s) 150, 316, 1176
DrdI GACNNNNNNGTC 2 cut(s) 260, 1259
DseDI GACNNNNNNGTC 2 cut(s) 260, 1259
EaeI YGGCCR 1 cut(s) 537
Eam1104I CTCTTC 1 cut(s) 592
EarI CTCTTC 1 cut(s) 592
Eco130I CCWWGG 3 cut(s) 288, 485, 540
Eco147I AGGCCT 2 cut(s) 83, 1234
Eco24I GRGCYC 1 cut(s) 234
Eco31I GGTCTC 1 cut(s) 407
Eco47I GGWCC 4 cut(s) 509, 1109, 1129, 1252
Eco57I CTGAAG 2 cut(s) 573, 576
Eco88I CYCGRG 3 cut(s) 107, 404, 654
EcoO109I RGGNCCY 1 cut(s) 1252
EcoRI GAATTC 1 cut(s) 1081
EcoRII CCWGG 4 cut(s) 269, 514, 594, 843
EcoT14I CCWWGG 3 cut(s) 288, 485, 540
EcoT22I ATGCAT 1 cut(s) 838
EcoT38I GRGCYC 1 cut(s) 234
ErhI CCWWGG 3 cut(s) 288, 485, 540
Esp3I CGTCTC 1 cut(s) 472
FaeI CATG 6 cut(s) 56, 100, 489, 1069, 1144, 1268
FalI AAGNNNNNCTT 4 cut(s) 518, 550, 1239, 1271
FaqI GGGAC 2 cut(s) 721, 1265
FatI CATG 6 cut(s) 52, 96, 485, 1065, 1140, 1264
FauI CCCGC 2 cut(s) 221, 391
FauNDI CATATG 1 cut(s) 912
Fnu4HI GCNGC 4 cut(s) 258, 304, 816, 1155
FokI GGATG 3 cut(s) 622, 655, 1040
FriOI GRGCYC 1 cut(s) 234
Fsp4HI GCNGC 4 cut(s) 258, 304, 816, 1155
FspBI CTAG 4 cut(s) 629, 741, 1166, 1224
GlaI GCGC 2 cut(s) 191, 412
GluI GCNGC 4 cut(s) 258, 304, 816, 1155
GsaI CCCAGC 1 cut(s) 345
HaeII RGCGCY 1 cut(s) 414
HapII CCGG 6 cut(s) 193, 234, 239, 320, 337, 1121
HgaI GACGC 2 cut(s) 263, 718
HhaI GCGC 2 cut(s) 192, 413
Hin1II CATG 6 cut(s) 56, 100, 489, 1069, 1144, 1268
Hin6I GCGC 2 cut(s) 190, 411
HinP1I GCGC 2 cut(s) 190, 411
HindIII AAGCTT 2 cut(s) 735, 970
HinfI GANTC 4 cut(s) 205, 563, 695, 747
HpaII CCGG 6 cut(s) 193, 234, 239, 320, 337, 1121
HphI GGTGA 3 cut(s) 169, 626, 1129
Hpy166II GTNNAC 3 cut(s) 925, 1109, 1275
Hpy188I TCNGA 3 cut(s) 592, 1006, 1087
Hpy8I GTNNAC 3 cut(s) 925, 1109, 1275
Hpy99I CGWCG 3 cut(s) 227, 257, 311
HpyAV CCTTC 5 cut(s) 293, 713, 896, 1190, 1289
HpyCH4III ACNGT 1 cut(s) 1240
HpyCH4IV ACGT 2 cut(s) 36, 859
HpyCH4V TGCA 7 cut(s) 427, 551, 769, 775, 815, 836, 1144
HpyF10VI GCNNNNNNNGC 6 cut(s) 234, 263, 331, 419, 424, 557
HpyF3I CTNAG 4 cut(s) 147, 459, 973, 987
HpySE526I ACGT 2 cut(s) 36, 859
Hsp92II CATG 6 cut(s) 56, 100, 489, 1069, 1144, 1268
HspAI GCGC 2 cut(s) 190, 411
Kpn2I TCCGGA 1 cut(s) 319
Kzo9I GATC 3 cut(s) 150, 316, 1176
LmnI GCTCC 2 cut(s) 322, 339
Lsp1109I GCAGC 2 cut(s) 827, 1166
LweI GCATC 2 cut(s) 762, 1051
MabI ACCWGGT 1 cut(s) 594
MaeI CTAG 4 cut(s) 629, 741, 1166, 1224
MaeII ACGT 2 cut(s) 36, 859
MalI GATC 3 cut(s) 152, 318, 1178
MboI GATC 3 cut(s) 150, 316, 1176
MboII GAAGA 4 cut(s) 68, 151, 579, 867
MflI RGATCY 2 cut(s) 316, 1176
MhlI GDGCHC 2 cut(s) 234, 667
MlsI TGGCCA 1 cut(s) 539
MluCI AATT 5 cut(s) 10, 173, 349, 1081, 1283
MluI ACGCGT 1 cut(s) 710
MluNI TGGCCA 1 cut(s) 539
MlyI GAGTC 1 cut(s) 557
MmeI TCCRAC 1 cut(s) 270
Mox20I TGGCCA 1 cut(s) 539
Mph1103I ATGCAT 1 cut(s) 838
MroI TCCGGA 1 cut(s) 319
MscI TGGCCA 1 cut(s) 539
MseI TTAA 1 cut(s) 348
Msp20I TGGCCA 1 cut(s) 539
MspI CCGG 6 cut(s) 193, 234, 239, 320, 337, 1121
MspR9I CCNGG 9 cut(s) 194, 234, 239, 271, 338, 516, 596, 845, 1122
MvaI CCWGG 4 cut(s) 271, 516, 596, 845
MvnI CGCG 3 cut(s) 257, 266, 712
MwoI GCNNNNNNNGC 6 cut(s) 234, 263, 331, 419, 424, 557
NciI CCSGG 5 cut(s) 194, 234, 239, 338, 1122
NcoI CCATGG 1 cut(s) 485
NdeI CATATG 1 cut(s) 912
NdeII GATC 3 cut(s) 150, 316, 1176
NlaIII CATG 6 cut(s) 56, 100, 489, 1069, 1144, 1268
NlaIV GGNNCC 4 cut(s) 232, 318, 787, 1253
NmeAIII GCCGAG 1 cut(s) 223
NruI TCGCGA 1 cut(s) 266
NsiI ATGCAT 1 cut(s) 838
NspV TTCGAA 1 cut(s) 853
PaeR7I CTCGAG 3 cut(s) 107, 404, 654
PceI AGGCCT 2 cut(s) 83, 1234
PfeI GAWTC 3 cut(s) 205, 695, 747
PfoI TCCNGGA 1 cut(s) 514
PkrI GCNGC 4 cut(s) 259, 305, 817, 1156
PleI GAGTC 1 cut(s) 557
PpsI GAGTC 1 cut(s) 557
Ppu21I YACGTR 1 cut(s) 37
PpuMI RGGWCCY 1 cut(s) 1252
Psp5II RGGWCCY 1 cut(s) 1252
Psp6I CCWGG 4 cut(s) 269, 514, 594, 843
PspFI CCCAGC 1 cut(s) 341
PspGI CCWGG 4 cut(s) 269, 514, 594, 843
PspN4I GGNNCC 4 cut(s) 232, 318, 787, 1253
PspOMI GGGCCC 1 cut(s) 230
PspPPI RGGWCCY 1 cut(s) 1252
PsuI RGATCY 2 cut(s) 316, 1176
RruI TCGCGA 1 cut(s) 266
RsaI GTAC 7 cut(s) 35, 95, 113, 134, 185, 1047, 1218
RsaNI GTAC 7 cut(s) 34, 94, 112, 133, 184, 1046, 1217
SaqAI TTAA 1 cut(s) 348
SatI GCNGC 4 cut(s) 258, 304, 816, 1155
Sau3AI GATC 3 cut(s) 150, 316, 1176
ScaI AGTACT 2 cut(s) 113, 185
SchI GAGTC 1 cut(s) 557
ScrFI CCNGG 9 cut(s) 194, 234, 239, 271, 338, 516, 596, 845, 1122
SduI GDGCHC 2 cut(s) 234, 667
SexAI ACCWGGT 1 cut(s) 594
SfaNI GCATC 2 cut(s) 762, 1051
SfcI CTRYAG 1 cut(s) 27
Sfr274I CTCGAG 3 cut(s) 107, 404, 654
SfuI TTCGAA 1 cut(s) 853
SinI GGWCC 4 cut(s) 509, 1109, 1129, 1252
SlaI CTCGAG 3 cut(s) 107, 404, 654
SmlI CTYRAG 5 cut(s) 107, 128, 404, 654, 1158
SmoI CTYRAG 5 cut(s) 107, 128, 404, 654, 1158
Sse9I AATT 5 cut(s) 10, 173, 349, 1081, 1283
SseBI AGGCCT 2 cut(s) 83, 1234
SsiI CCGC 6 cut(s) 228, 257, 260, 303, 398, 1127
SspMI CTAG 4 cut(s) 629, 741, 1166, 1224
StuI AGGCCT 2 cut(s) 83, 1234
StyD4I CCNGG 9 cut(s) 192, 232, 237, 269, 336, 514, 594, 843, 1120
StyI CCWWGG 3 cut(s) 288, 485, 540
TaaI ACNGT 1 cut(s) 1240
TaiI ACGT 2 cut(s) 39, 862
TaqI TCGA 5 cut(s) 108, 405, 655, 853, 904
TasI AATT 5 cut(s) 10, 173, 349, 1081, 1283
TatI WGTACW 3 cut(s) 93, 111, 183
TauI GCSGC 2 cut(s) 260, 306
TfiI GAWTC 3 cut(s) 205, 695, 747
Tru1I TTAA 1 cut(s) 348
Tru9I TTAA 1 cut(s) 348
TseI GCWGC 2 cut(s) 815, 1154
TspDTI ATGAA 5 cut(s) 69, 113, 702, 1087, 1281
VpaK11BI GGWCC 4 cut(s) 509, 1109, 1129, 1252
XapI RAATTY 3 cut(s) 173, 1081, 1283
XbaI TCTAGA 1 cut(s) 740
XcmI CCANNNNNNNNNTGG 1 cut(s) 1147
XhoI CTCGAG 3 cut(s) 107, 404, 654
XspI CTAG 4 cut(s) 629, 741, 1166, 1224
ZrmI AGTACT 2 cut(s) 113, 185
Zsp2I ATGCAT 1 cut(s) 838
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.