Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004300.1

Orthogroup ID

OG0002427

Physical Location & Seq

Genomic Coordinates Reverse (-)

12177 .. 12425

Gene Structure 249 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004300.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 249 bp

atgtatagcaatttcaagaaggctattacccagatattcacagagtacttgcgccgggctatggggattcatatcaatttggatgacgacggtcccggcccgacctccaaaggcgatgtggcggtggttaccaatctgaagaccaagccagaggacggcgaaggccgcgacggggaggatccggagcagaccaagctccgagccaggcttaatttgccggtcaagttccctcagttctttactggttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000902 GO:0000904 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005768 GO:0005770 GO:0005771 GO:0005911 GO:0006629 GO:0006810 GO:0006900 GO:0006914 GO:0006996 GO:0007032 GO:0007033 GO:0007034 GO:0008104 GO:0008144 GO:0008150 GO:0008152 GO:0008202 GO:0009056 GO:0009506 GO:0009653 GO:0009888 GO:0009987 GO:0010008 GO:0010026 GO:0010090 GO:0010091 GO:0010256 GO:0012505 GO:0016020 GO:0016043 GO:0016050 GO:0016125 GO:0016192 GO:0016197 GO:0016236 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0022607 GO:0030054 GO:0030154 GO:0030554 GO:0031090 GO:0031410 GO:0031982 GO:0032502 GO:0032507 GO:0032509 GO:0032511 GO:0032553 GO:0032555 GO:0032559 GO:0032989 GO:0032991 GO:0033036 GO:0033365 GO:0034067 GO:0034613 GO:0035639 GO:0036094 GO:0036452 GO:0042592 GO:0042802 GO:0042803 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045053 GO:0045185 GO:0045324 GO:0046907 GO:0046983 GO:0048468 GO:0048856 GO:0048869 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0051235 GO:0051259 GO:0051260 GO:0051641 GO:0051649 GO:0051651 GO:0055044 GO:0055065 GO:0055067 GO:0055075 GO:0055078 GO:0055080 GO:0061024 GO:0061919 GO:0065003 GO:0065007 GO:0065008 GO:0070676 GO:0070727 GO:0071704 GO:0071840 GO:0071985 GO:0090558 GO:0090626 GO:0097159 GO:0097367 GO:0097708 GO:0098588 GO:0098771 GO:0098796 GO:0098805 GO:1901265 GO:1901360 GO:1901363 GO:1901615 GO:1902494 GO:1904949 GO:1990621

KEGG Pathways

Metabolic & Signaling

ko04144 ko04217 map04144 map04217

Pfam Domains

Protein Families

AAA MIT Vps4_C

Protein Analysis

82

Amino Acids

9.18

Weight (kDa)

6.56

Isoelectric Point (pI)

37.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002427)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08270 AT1G08270 AT2G27600
fragaria_vesca	FvH4_3g24610 FvH4_3g24610 FvH4_3g24610 FvH4_3g24610
malus_domestica	MD03G1141900.v1.1 MD11G1161300.v1.1
prunus_persica	Prupe.6G127200_v2.0.a1
pyrus_communis	pycom03g09670 pycom11g13390
rosa_chinensis	RchiOBHm_Chr2g0101721 RchiOBHm_Chr5g0044161 RchiOBHm_Chr6g0255971 RchiOBHm_Chr6g0260081 RchiOBHm_Chr7g0184771
rosa_laevigata	RLG00000009143 RLG00000014364 RLG00000021343 RLG00000035169 RLG00000036978
rosa_multiflora	Rmu_sc0000363.1_g000012 Rmu_sc0001648.1_g000029 Rmu_sc0001857.1_g000012 Rmu_sc0004300.1_g000002 Rmu_sc0009830.1_g000003
rosa_roxburghii	Rroxscaffold_2G00091250 Rroxscaffold_3G00264580 Rroxscaffold_7G00197410
rosa_rugosa	Rorug03G0333400
rosa_samantha	Rh2BG234400 Rh2CG154700 Rh5AG295900 Rh5BG309400 Rh5CG292800 Rh5CG330700 Rh6AG305600 Rh7BG180900
rosa_wichuraiana	Rw5G027360 Rw5G027430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	168
AccIII	TCCGGA	1 cut(s)	181
AciI	CCGC	2 cut(s)	122, 166
AclWI	GGATC	2 cut(s)	173, 186
AcuI	CTGAAG	1 cut(s)	158
AfaI	GTAC	1 cut(s)	47
AfiI	CCNNNNNNNGG	3 cut(s)	61, 155, 172
AgsI	TTSAA	1 cut(s)	16
AjnI	CCWGG	1 cut(s)	203
AluBI	AGCT	1 cut(s)	196
AluI	AGCT	1 cut(s)	196
AlwI	GGATC	2 cut(s)	173, 186
Aor13HI	TCCGGA	1 cut(s)	181
AoxI	GGCC	2 cut(s)	97, 163
AspLEI	GCGC	1 cut(s)	54
AspS9I	GGNCC	2 cut(s)	92, 98
AsuC2I	CCSGG	2 cut(s)	56, 96
AvaII	GGWCC	1 cut(s)	92
BamHI	GGATCC	1 cut(s)	178
BbsI	GAAGAC	1 cut(s)	146
BceAI	ACGGC	1 cut(s)	172
BciT130I	CCWGG	1 cut(s)	205
BcnI	CCSGG	2 cut(s)	56, 96
BisI	GCNGC	1 cut(s)	166
BlsI	GCNGC	1 cut(s)	167
BmcAI	AGTACT	1 cut(s)	47
Bme1390I	CCNGG	3 cut(s)	56, 96, 205
Bme18I	GGWCC	1 cut(s)	92
BmgT120I	GGNCC	2 cut(s)	92, 98
BmiI	GGNNCC	2 cut(s)	94, 180
BmrFI	CCNGG	3 cut(s)	56, 96, 205
BoxI	GACNNNNGTC	1 cut(s)	90
BpiI	GAAGAC	1 cut(s)	146
BpuMI	CCSGG	2 cut(s)	56, 96
BsaBI	GATNNNNATC	1 cut(s)	71
BsaWI	WCCGGW	1 cut(s)	181
Bsc4I	CCNNNNNNNGG	3 cut(s)	61, 155, 172
Bse118I	RCCGGY	1 cut(s)	217
Bse1I	ACTGG	1 cut(s)	247
Bse8I	GATNNNNATC	1 cut(s)	71
BseAI	TCCGGA	1 cut(s)	181
BseBI	CCWGG	1 cut(s)	205
BseGI	GGATG	1 cut(s)	88
BseJI	GATNNNNATC	1 cut(s)	71
BseLI	CCNNNNNNNGG	3 cut(s)	61, 155, 172
BseMII	CTCAG	1 cut(s)	245
BseNI	ACTGG	1 cut(s)	247
Bsh1236I	CGCG	1 cut(s)	168
BshFI	GGCC	2 cut(s)	99, 165
BsiSI	CCGG	4 cut(s)	55, 96, 182, 218
BslFI	GGGAC	1 cut(s)	78
BslI	CCNNNNNNNGG	3 cut(s)	61, 155, 172
BsmFI	GGGAC	1 cut(s)	78
BsnI	GGCC	2 cut(s)	99, 165
Bsp13I	TCCGGA	1 cut(s)	181
Bsp143I	GATC	1 cut(s)	178
BspACI	CCGC	2 cut(s)	122, 166
BspANI	GGCC	2 cut(s)	99, 165
BspCNI	CTCAG	1 cut(s)	244
BspEI	TCCGGA	1 cut(s)	181
BspFNI	CGCG	1 cut(s)	168
BspLI	GGNNCC	2 cut(s)	94, 180
BspPI	GGATC	2 cut(s)	173, 186
BsrFI	RCCGGY	1 cut(s)	217
BsrI	ACTGG	1 cut(s)	247
BssAI	RCCGGY	1 cut(s)	217
BssMI	GATC	1 cut(s)	178
Bst2UI	CCWGG	1 cut(s)	205
Bst4CI	ACNGT	1 cut(s)	92
BstDEI	CTNAG	1 cut(s)	231
BstEII	GGTNACC	1 cut(s)	127
BstF5I	GGATG	1 cut(s)	88
BstFNI	CGCG	1 cut(s)	168
BstHHI	GCGC	1 cut(s)	54
BstKTI	GATC	1 cut(s)	181
BstMBI	GATC	1 cut(s)	178
BstMWI	GCNNNNNNNGC	3 cut(s)	165, 193, 214
BstNI	CCWGG	1 cut(s)	205
BstPAI	GACNNNNGTC	1 cut(s)	90
BstPI	GGTNACC	1 cut(s)	127
BstSCI	CCNGG	3 cut(s)	54, 94, 203
BstUI	CGCG	1 cut(s)	168
BstV2I	GAAGAC	1 cut(s)	146
BstX2I	RGATCY	1 cut(s)	178
BstYI	RGATCY	1 cut(s)	178
BsuRI	GGCC	2 cut(s)	99, 165
BtgZI	GCGATG	1 cut(s)	129
BtsCI	GGATG	1 cut(s)	88
CfoI	GCGC	1 cut(s)	54
Cfr10I	RCCGGY	1 cut(s)	217
Cfr13I	GGNCC	2 cut(s)	92, 98
Csp6I	GTAC	1 cut(s)	46
CviJI	RGCY	8 cut(s)	23, 59, 99, 148, 165, 196, 203, 208
CviKI_1	RGCY	8 cut(s)	23, 59, 99, 148, 165, 196, 203, 208
CviQI	GTAC	1 cut(s)	46
DdeI	CTNAG	1 cut(s)	231
DpnI	GATC	1 cut(s)	180
DpnII	GATC	1 cut(s)	178
Eco47I	GGWCC	1 cut(s)	92
Eco57I	CTGAAG	1 cut(s)	158
Eco91I	GGTNACC	1 cut(s)	127
EcoO65I	GGTNACC	1 cut(s)	127
EcoRII	CCWGG	1 cut(s)	203
FaiI	YATR	3 cut(s)	6, 62, 72
FaqI	GGGAC	1 cut(s)	78
Fnu4HI	GCNGC	1 cut(s)	166
FokI	GGATG	1 cut(s)	95
Fsp4HI	GCNGC	1 cut(s)	166
GlaI	GCGC	1 cut(s)	53
GluI	GCNGC	1 cut(s)	166
HaeIII	GGCC	2 cut(s)	99, 165
HapII	CCGG	4 cut(s)	55, 96, 182, 218
HhaI	GCGC	1 cut(s)	54
Hin6I	GCGC	1 cut(s)	52
HinP1I	GCGC	1 cut(s)	52
HinfI	GANTC	1 cut(s)	67
HpaII	CCGG	4 cut(s)	55, 96, 182, 218
Hpy188I	TCNGA	2 cut(s)	138, 200
Hpy188III	TCNNGA	2 cut(s)	16, 182
Hpy99I	CGWCG	2 cut(s)	92, 173
HpyAV	CCTTC	2 cut(s)	13, 155
HpyCH4III	ACNGT	1 cut(s)	92
HpyF10VI	GCNNNNNNNGC	3 cut(s)	165, 193, 214
HpyF3I	CTNAG	1 cut(s)	231
HspAI	GCGC	1 cut(s)	52
Kpn2I	TCCGGA	1 cut(s)	181
Kzo9I	GATC	1 cut(s)	178
LmnI	GCTCC	2 cut(s)	184, 201
LpnPI	CCDG	9 cut(s)	44, 68, 109, 162, 190, 195, 217, 228, 231
MaeIII	GTNAC	1 cut(s)	127
MalI	GATC	1 cut(s)	180
MboI	GATC	1 cut(s)	178
MboII	GAAGA	1 cut(s)	151
MflI	RGATCY	1 cut(s)	178
MluCI	AATT	3 cut(s)	10, 76, 211
MnlI	CCTC	4 cut(s)	115, 145, 169, 240
MroI	TCCGGA	1 cut(s)	181
MseI	TTAA	1 cut(s)	210
MspI	CCGG	4 cut(s)	55, 96, 182, 218
MspR9I	CCNGG	3 cut(s)	56, 96, 205
MvaI	CCWGG	1 cut(s)	205
MvnI	CGCG	1 cut(s)	168
MwoI	GCNNNNNNNGC	3 cut(s)	165, 193, 214
NciI	CCSGG	2 cut(s)	56, 96
NdeII	GATC	1 cut(s)	178
NlaIV	GGNNCC	2 cut(s)	94, 180
PfeI	GAWTC	1 cut(s)	67
PkrI	GCNGC	1 cut(s)	167
PshAI	GACNNNNGTC	1 cut(s)	90
Psp6I	CCWGG	1 cut(s)	203
PspEI	GGTNACC	1 cut(s)	127
PspGI	CCWGG	1 cut(s)	203
PspN4I	GGNNCC	2 cut(s)	94, 180
PspPI	GGNCC	2 cut(s)	92, 98
PsuI	RGATCY	1 cut(s)	178
RsaI	GTAC	1 cut(s)	47
RsaNI	GTAC	1 cut(s)	46
SaqAI	TTAA	1 cut(s)	210
SatI	GCNGC	1 cut(s)	166
Sau3AI	GATC	1 cut(s)	178
Sau96I	GGNCC	2 cut(s)	92, 98
ScaI	AGTACT	1 cut(s)	47
ScrFI	CCNGG	3 cut(s)	56, 96, 205
SetI	ASST	2 cut(s)	107, 198
SinI	GGWCC	1 cut(s)	92
Sse9I	AATT	3 cut(s)	10, 76, 211
SsiI	CCGC	2 cut(s)	122, 166
StyD4I	CCNGG	3 cut(s)	54, 94, 203
TaaI	ACNGT	1 cut(s)	92
TasI	AATT	3 cut(s)	10, 76, 211
TatI	WGTACW	1 cut(s)	45
TauI	GCSGC	1 cut(s)	168
TfiI	GAWTC	1 cut(s)	67
Tru1I	TTAA	1 cut(s)	210
Tru9I	TTAA	1 cut(s)	210
TspDTI	ATGAA	1 cut(s)	59
VpaK11BI	GGWCC	1 cut(s)	92
XcmI	CCANNNNNNNNNTGG	1 cut(s)	115
ZrmI	AGTACT	1 cut(s)	47

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.