Rh5CG292800

Belongs to the AAA ATPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0002427
Physical Location & Seq
Forward (+)
32231301 .. 32260019
28719 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG292800.1

Sequence Viewer

Length: 648 bp
ATGATCACAGCTCCGGGGCGACGCCTAGAGATGTATAGCAATTTCAAGAAGGCTATTACCCAGATATTCACCGAGTACTTGCGCTGGGCTATGGAGATTCGTATCGTTTTGGATGACGACGGGCCCGGCCCGGCCTCCAACGGCGATGTGGCGGTGGTTACCAGTTTGAAGACCAAGCCCGAGGACGGCGAAGGCTGCGACGGGGAGGATCCGGAGCAGACCAAGCTCCGAGCCGGGGTTAATTTGCCGGTTGGAGCTATTGTTGGACTTGATCAATATGTCAACTACAAAATTCAGCTGAGGATACAACAGAGGATTAAAAGCGCAGAGCTCAGGATGTTAACCGAGGAGCAAGAAAATGAACTTCCGAACTTTACACCATTCATTCCATTGATGTCTCCCTTGGTTCGTCATGTCAACCCTAGCTTGGTGTTTGTCTCAGAAACCCTTGCAGGACCAAGACTGATGAAGGACCTGCGAGTTGAAATGGGTTTCTCTGGCTGTATTTGCTTTCCCAAAAGGGAGGGCTCACGAGGTTTGGCTTTATTCTGGTCTTCAGAGTTGAAGGTGAATCTTCGTACCTACTCCGCACATCATATTGATGCTGAGATAGGGATTCTGGTGTCGTTGGAGTTTAGCGATTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0000902 GO:0000904 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005768 GO:0005770 GO:0005771 GO:0005911 GO:0006629 GO:0006810 GO:0006900 GO:0006914 GO:0006996 GO:0007032 GO:0007033 GO:0007034 GO:0008104 GO:0008144 GO:0008150 GO:0008152 GO:0008202 GO:0009056 GO:0009506 GO:0009653 GO:0009888 GO:0009987 GO:0010008 GO:0010026 GO:0010090 GO:0010091 GO:0010256 GO:0012505 GO:0016020 GO:0016043 GO:0016050 GO:0016125 GO:0016192 GO:0016197 GO:0016236 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0022607 GO:0030054 GO:0030154 GO:0030554 GO:0031090 GO:0031410 GO:0031982 GO:0032502 GO:0032507 GO:0032509 GO:0032511 GO:0032553 GO:0032555 GO:0032559 GO:0032989 GO:0032991 GO:0033036 GO:0033365 GO:0034067 GO:0034613 GO:0035639 GO:0036094 GO:0036452 GO:0042592 GO:0042802 GO:0042803 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045053 GO:0045185 GO:0045324 GO:0046907 GO:0046983 GO:0048468 GO:0048856 GO:0048869 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0051235 GO:0051259 GO:0051260 GO:0051641 GO:0051649 GO:0051651 GO:0055044 GO:0055065 GO:0055067 GO:0055075 GO:0055078 GO:0055080 GO:0061024 GO:0061919 GO:0065003 GO:0065007 GO:0065008 GO:0070676 GO:0070727 GO:0071704 GO:0071840 GO:0071985 GO:0090558 GO:0090626 GO:0097159 GO:0097367 GO:0097708 GO:0098588 GO:0098771 GO:0098796 GO:0098805 GO:1901265 GO:1901360 GO:1901363 GO:1901615 GO:1902494 GO:1904949 GO:1990621
KEGG Pathways
Metabolic & Signaling
ko04144 ko04217 map04144 map04217
Pfam Domains
Protein Families
AAA MIT Vps4_C

Protein Analysis

215

Amino Acids

24.08

Weight (kDa)

5.34

Isoelectric Point (pI)

43.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 483
AccIII TCCGGA 1 cut(s) 211
AciI CCGC 2 cut(s) 152, 588
AclWI GGATC 2 cut(s) 203, 216
AcsI RAATTY 1 cut(s) 291
AcuI CTGAAG 1 cut(s) 540
AcyI GRCGYC 1 cut(s) 22
AfaI GTAC 2 cut(s) 77, 580
AfiI CCNNNNNNNGG 3 cut(s) 185, 235, 427
AgsI TTSAA 4 cut(s) 46, 169, 485, 565
AluBI AGCT 6 cut(s) 11, 226, 257, 298, 331, 426
AluI AGCT 6 cut(s) 11, 226, 257, 298, 331, 426
Alw21I GWGCWC 1 cut(s) 333
Alw26I GTCTC 2 cut(s) 402, 442
AlwI GGATC 2 cut(s) 203, 216
Ama87I CYCGRG 1 cut(s) 179
Aor13HI TCCGGA 1 cut(s) 211
AoxI GGCC 3 cut(s) 122, 127, 132
ApaI GGGCCC 1 cut(s) 126
ApeKI GCWGC 1 cut(s) 195
ApoI RAATTY 1 cut(s) 291
AspLEI GCGC 2 cut(s) 84, 326
AspS9I GGNCC 5 cut(s) 122, 123, 128, 455, 472
AsuC2I CCSGG 4 cut(s) 15, 126, 131, 235
AsuHPI GGTGA 2 cut(s) 61, 580
AvaI CYCGRG 1 cut(s) 179
AvaII GGWCC 2 cut(s) 455, 472
BaeGI GKGCMC 1 cut(s) 126
BamHI GGATCC 1 cut(s) 208
BanII GRGCYC 3 cut(s) 126, 333, 530
BauI CACGAG 1 cut(s) 531
BbsI GAAGAC 2 cut(s) 176, 546
Bbv12I GWGCWC 1 cut(s) 333
BbvCI CCTCAGC 1 cut(s) 299
BbvI GCAGC 1 cut(s) 182
BceAI ACGGC 2 cut(s) 157, 202
BciVI GTATCC 1 cut(s) 297
BclI TGATCA 2 cut(s) 3, 271
BcnI CCSGG 4 cut(s) 15, 126, 131, 235
BcoDI GTCTC 2 cut(s) 402, 442
BfaI CTAG 2 cut(s) 26, 423
BfuAI ACCTGC 1 cut(s) 483
BfuI GTATCC 1 cut(s) 297
BisI GCNGC 1 cut(s) 196
BlsI GCNGC 1 cut(s) 197
BmcAI AGTACT 1 cut(s) 77
Bme1390I CCNGG 4 cut(s) 15, 126, 131, 235
Bme18I GGWCC 2 cut(s) 455, 472
BmeT110I CYCGRG 1 cut(s) 179
BmgT120I GGNCC 5 cut(s) 122, 123, 128, 455, 472
BmiI GGNNCC 2 cut(s) 124, 210
BmrFI CCNGG 4 cut(s) 15, 126, 131, 235
BmsI GCATC 1 cut(s) 592
BpiI GAAGAC 2 cut(s) 176, 546
Bpu10I CCTNAGC 2 cut(s) 299, 332
BpuMI CCSGG 4 cut(s) 15, 126, 131, 235
BsaBI GATNNNNATC 1 cut(s) 101
BsaHI GRCGYC 1 cut(s) 22
BsaJI CCNNGG 5 cut(s) 14, 180, 234, 345, 402
BsaWI WCCGGW 1 cut(s) 211
BsaXI ACNNNNNCTCC 2 cut(s) 246, 276
Bsc4I CCNNNNNNNGG 3 cut(s) 185, 235, 427
Bse118I RCCGGY 1 cut(s) 247
Bse1I ACTGG 1 cut(s) 162
Bse8I GATNNNNATC 1 cut(s) 101
BseAI TCCGGA 1 cut(s) 211
BseDI CCNNGG 5 cut(s) 14, 180, 234, 345, 402
BseGI GGATG 2 cut(s) 118, 342
BseJI GATNNNNATC 1 cut(s) 101
BseLI CCNNNNNNNGG 3 cut(s) 185, 235, 427
BseMII CTCAG 4 cut(s) 290, 346, 453, 597
BseNI ACTGG 1 cut(s) 162
BseRI GAGGAG 1 cut(s) 362
BseSI GKGCMC 1 cut(s) 126
BseXI GCAGC 1 cut(s) 182
BseYI CCCAGC 1 cut(s) 84
BshFI GGCC 3 cut(s) 124, 129, 134
BsiHKAI GWGCWC 1 cut(s) 333
BsiHKCI CYCGRG 1 cut(s) 179
BsiSI CCGG 6 cut(s) 14, 126, 131, 212, 234, 248
BslI CCNNNNNNNGG 3 cut(s) 185, 235, 427
BsmAI GTCTC 2 cut(s) 402, 442
BsnI GGCC 3 cut(s) 124, 129, 134
BsoBI CYCGRG 1 cut(s) 179
Bsp120I GGGCCC 1 cut(s) 122
Bsp1286I GDGCHC 3 cut(s) 126, 333, 530
Bsp13I TCCGGA 1 cut(s) 211
Bsp143I GATC 3 cut(s) 3, 208, 271
BspACI CCGC 2 cut(s) 152, 588
BspANI GGCC 3 cut(s) 124, 129, 134
BspCNI CTCAG 4 cut(s) 291, 345, 452, 598
BspEI TCCGGA 1 cut(s) 211
BspLI GGNNCC 2 cut(s) 124, 210
BspMI ACCTGC 1 cut(s) 483
BspPI GGATC 2 cut(s) 203, 216
BsrFI RCCGGY 1 cut(s) 247
BsrI ACTGG 1 cut(s) 162
BssAI RCCGGY 1 cut(s) 247
BssECI CCNNGG 5 cut(s) 14, 180, 234, 345, 402
BssMI GATC 3 cut(s) 3, 208, 271
BssNI GRCGYC 1 cut(s) 22
BssSI CACGAG 1 cut(s) 531
BssT1I CCWWGG 1 cut(s) 402
Bst2BI CACGAG 1 cut(s) 531
BstACI GRCGYC 1 cut(s) 22
BstDEI CTNAG 4 cut(s) 299, 332, 439, 606
BstEII GGTNACC 1 cut(s) 157
BstF5I GGATG 2 cut(s) 118, 342
BstHHI GCGC 2 cut(s) 84, 326
BstKTI GATC 3 cut(s) 6, 211, 274
BstMAI GTCTC 2 cut(s) 402, 442
BstMBI GATC 3 cut(s) 3, 208, 271
BstMWI GCNNNNNNNGC 3 cut(s) 195, 223, 507
BstPI GGTNACC 1 cut(s) 157
BstSCI CCNGG 4 cut(s) 13, 124, 129, 233
BstSLI GKGCMC 1 cut(s) 126
BstV1I GCAGC 1 cut(s) 182
BstV2I GAAGAC 2 cut(s) 176, 546
BstX2I RGATCY 1 cut(s) 208
BstYI RGATCY 1 cut(s) 208
BsuI GTATCC 1 cut(s) 297
BsuRI GGCC 3 cut(s) 124, 129, 134
BtgZI GCGATG 1 cut(s) 159
BtsCI GGATG 2 cut(s) 118, 342
BveI ACCTGC 1 cut(s) 483
CfoI GCGC 2 cut(s) 84, 326
Cfr10I RCCGGY 1 cut(s) 247
Cfr13I GGNCC 5 cut(s) 122, 123, 128, 455, 472
CseI GACGC 1 cut(s) 30
Csp6I GTAC 2 cut(s) 76, 579
CviAII CATG 1 cut(s) 413
CviQI GTAC 2 cut(s) 76, 579
DdeI CTNAG 4 cut(s) 299, 332, 439, 606
DpnI GATC 3 cut(s) 5, 210, 273
DpnII GATC 3 cut(s) 3, 208, 271
Ecl136II GAGCTC 1 cut(s) 331
Eco130I CCWWGG 1 cut(s) 402
Eco24I GRGCYC 3 cut(s) 126, 333, 530
Eco47I GGWCC 2 cut(s) 455, 472
Eco53kI GAGCTC 1 cut(s) 331
Eco57I CTGAAG 1 cut(s) 540
Eco88I CYCGRG 1 cut(s) 179
Eco91I GGTNACC 1 cut(s) 157
EcoICRI GAGCTC 1 cut(s) 331
EcoO109I RGGNCCY 1 cut(s) 472
EcoO65I GGTNACC 1 cut(s) 157
EcoT14I CCWWGG 1 cut(s) 402
EcoT38I GRGCYC 3 cut(s) 126, 333, 530
ErhI CCWWGG 1 cut(s) 402
FaeI CATG 1 cut(s) 416
FaiI YATR 6 cut(s) 36, 92, 279, 414, 597, 646
FatI CATG 1 cut(s) 412
FbaI TGATCA 2 cut(s) 3, 271
Fnu4HI GCNGC 1 cut(s) 196
FokI GGATG 2 cut(s) 125, 349
FriOI GRGCYC 3 cut(s) 126, 333, 530
Fsp4HI GCNGC 1 cut(s) 196
FspBI CTAG 2 cut(s) 26, 423
GlaI GCGC 2 cut(s) 83, 325
GluI GCNGC 1 cut(s) 196
GsaI CCCAGC 1 cut(s) 88
HaeIII GGCC 3 cut(s) 124, 129, 134
HapII CCGG 6 cut(s) 14, 126, 131, 212, 234, 248
HgaI GACGC 1 cut(s) 30
HhaI GCGC 2 cut(s) 84, 326
Hin1I GRCGYC 1 cut(s) 22
Hin1II CATG 1 cut(s) 416
Hin6I GCGC 2 cut(s) 82, 324
HinP1I GCGC 2 cut(s) 82, 324
HincII GTYRAC 3 cut(s) 283, 342, 418
HindII GTYRAC 3 cut(s) 283, 342, 418
HinfI GANTC 3 cut(s) 97, 571, 616
HpaI GTTAAC 1 cut(s) 342
HpaII CCGG 6 cut(s) 14, 126, 131, 212, 234, 248
HphI GGTGA 2 cut(s) 61, 580
Hpy166II GTNNAC 3 cut(s) 283, 342, 418
Hpy188I TCNGA 4 cut(s) 230, 369, 442, 559
Hpy188III TCNNGA 4 cut(s) 46, 212, 334, 531
Hpy8I GTNNAC 3 cut(s) 283, 342, 418
Hpy99I CGWCG 3 cut(s) 24, 122, 203
HpyAV CCTTC 4 cut(s) 43, 185, 463, 559
HpyCH4V TGCA 1 cut(s) 452
HpyF10VI GCNNNNNNNGC 3 cut(s) 195, 223, 507
HpyF3I CTNAG 4 cut(s) 299, 332, 439, 606
Hsp92I GRCGYC 1 cut(s) 22
Hsp92II CATG 1 cut(s) 416
HspAI GCGC 2 cut(s) 82, 324
Kpn2I TCCGGA 1 cut(s) 211
Ksp22I TGATCA 2 cut(s) 3, 271
KspAI GTTAAC 1 cut(s) 342
Kzo9I GATC 3 cut(s) 3, 208, 271
LmnI GCTCC 5 cut(s) 16, 214, 231, 254, 349
Lsp1109I GCAGC 1 cut(s) 182
LweI GCATC 1 cut(s) 592
MaeI CTAG 2 cut(s) 26, 423
MaeIII GTNAC 1 cut(s) 157
MalI GATC 3 cut(s) 5, 210, 273
MboI GATC 3 cut(s) 3, 208, 271
MboII GAAGA 3 cut(s) 181, 546, 566
MflI RGATCY 1 cut(s) 208
MhlI GDGCHC 3 cut(s) 126, 333, 530
MluCI AATT 3 cut(s) 40, 241, 291
MmeI TCCRAC 4 cut(s) 162, 232, 244, 609
MnlI CCTC 8 cut(s) 145, 175, 199, 294, 306, 340, 517, 527
MroI TCCGGA 1 cut(s) 211
MseI TTAA 3 cut(s) 240, 318, 341
MslI CAYNNNNRTG 1 cut(s) 600
MspA1I CMGCKG 1 cut(s) 298
MspI CCGG 6 cut(s) 14, 126, 131, 212, 234, 248
MspR9I CCNGG 4 cut(s) 15, 126, 131, 235
MwoI GCNNNNNNNGC 3 cut(s) 195, 223, 507
NciI CCSGG 4 cut(s) 15, 126, 131, 235
NdeII GATC 3 cut(s) 3, 208, 271
NlaIII CATG 1 cut(s) 416
NlaIV GGNNCC 2 cut(s) 124, 210
PfeI GAWTC 3 cut(s) 97, 571, 616
PkrI GCNGC 1 cut(s) 197
PpuMI RGGWCCY 1 cut(s) 472
Psp124BI GAGCTC 1 cut(s) 333
Psp5II RGGWCCY 1 cut(s) 472
PspEI GGTNACC 1 cut(s) 157
PspFI CCCAGC 1 cut(s) 84
PspN4I GGNNCC 2 cut(s) 124, 210
PspOMI GGGCCC 1 cut(s) 122
PspPI GGNCC 5 cut(s) 122, 123, 128, 455, 472
PspPPI RGGWCCY 1 cut(s) 472
PsuI RGATCY 1 cut(s) 208
PvuII CAGCTG 1 cut(s) 298
RsaI GTAC 2 cut(s) 77, 580
RsaNI GTAC 2 cut(s) 76, 579
RseI CAYNNNNRTG 1 cut(s) 600
SacI GAGCTC 1 cut(s) 333
SaqAI TTAA 3 cut(s) 240, 318, 341
SatI GCNGC 1 cut(s) 196
Sau3AI GATC 3 cut(s) 3, 208, 271
Sau96I GGNCC 5 cut(s) 122, 123, 128, 455, 472
ScaI AGTACT 1 cut(s) 77
ScrFI CCNGG 4 cut(s) 15, 126, 131, 235
SduI GDGCHC 3 cut(s) 126, 333, 530
SfaNI GCATC 1 cut(s) 592
SinI GGWCC 2 cut(s) 455, 472
SmiMI CAYNNNNRTG 1 cut(s) 600
Sse9I AATT 3 cut(s) 40, 241, 291
SsiI CCGC 2 cut(s) 152, 588
SspMI CTAG 2 cut(s) 26, 423
SstI GAGCTC 1 cut(s) 333
StyD4I CCNGG 4 cut(s) 13, 124, 129, 233
StyI CCWWGG 1 cut(s) 402
TasI AATT 3 cut(s) 40, 241, 291
TatI WGTACW 1 cut(s) 75
TfiI GAWTC 3 cut(s) 97, 571, 616
Tru1I TTAA 3 cut(s) 240, 318, 341
Tru9I TTAA 3 cut(s) 240, 318, 341
TseI GCWGC 1 cut(s) 195
TspDTI ATGAA 3 cut(s) 373, 375, 482
VpaK11BI GGWCC 2 cut(s) 455, 472
XapI RAATTY 1 cut(s) 291
XcmI CCANNNNNNNNNTGG 1 cut(s) 145
XspI CTAG 2 cut(s) 26, 423
ZrmI AGTACT 1 cut(s) 77
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.