Rh7BG180900

Belongs to the AAA ATPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0002427
Physical Location & Seq
Forward (+)
14342275 .. 14342457
183 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG180900.1

Sequence Viewer

Length: 183 bp
ATGAACGCTCTCGAGTACTTCAAGACGCACCTCAAGTACGGGAACCCTAAGATCAAGGAGGCCATTACCCAGAAATTCACCGAGTACTTGTGTCGCGCTGTTTTGGATGACGGCAGTCCCGGCCCGGCCTCCAACGGTGATGCGGCGGTGGCTAGCAGGCCGAAGACCAAGCCCAAGGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0000902 GO:0000904 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005768 GO:0005770 GO:0005771 GO:0005911 GO:0006629 GO:0006810 GO:0006900 GO:0006914 GO:0006996 GO:0007032 GO:0007033 GO:0007034 GO:0008104 GO:0008144 GO:0008150 GO:0008152 GO:0008202 GO:0009056 GO:0009506 GO:0009653 GO:0009888 GO:0009987 GO:0010008 GO:0010026 GO:0010090 GO:0010091 GO:0010256 GO:0012505 GO:0016020 GO:0016043 GO:0016050 GO:0016125 GO:0016192 GO:0016197 GO:0016236 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0022607 GO:0030054 GO:0030154 GO:0030554 GO:0031090 GO:0031410 GO:0031982 GO:0032502 GO:0032507 GO:0032509 GO:0032511 GO:0032553 GO:0032555 GO:0032559 GO:0032989 GO:0032991 GO:0033036 GO:0033365 GO:0034067 GO:0034613 GO:0035639 GO:0036094 GO:0036452 GO:0042592 GO:0042802 GO:0042803 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045053 GO:0045185 GO:0045324 GO:0046907 GO:0046983 GO:0048468 GO:0048856 GO:0048869 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0051235 GO:0051259 GO:0051260 GO:0051641 GO:0051649 GO:0051651 GO:0055044 GO:0055065 GO:0055067 GO:0055075 GO:0055078 GO:0055080 GO:0061024 GO:0061919 GO:0065003 GO:0065007 GO:0065008 GO:0070676 GO:0070727 GO:0071704 GO:0071840 GO:0071985 GO:0090558 GO:0090626 GO:0097159 GO:0097367 GO:0097708 GO:0098588 GO:0098771 GO:0098796 GO:0098805 GO:1901265 GO:1901360 GO:1901363 GO:1901615 GO:1902494 GO:1904949 GO:1990621
KEGG Pathways
Metabolic & Signaling
ko04144 ko04217 map04144 map04217
Pfam Domains
Protein Families
AAA MIT Vps4_C

Protein Analysis

60

Amino Acids

6.58

Weight (kDa)

9.17

Isoelectric Point (pI)

14.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 96
AciI CCGC 2 cut(s) 143, 146
AcsI RAATTY 1 cut(s) 74
AfaI GTAC 3 cut(s) 17, 38, 86
AgsI TTSAA 1 cut(s) 22
Ama87I CYCGRG 1 cut(s) 11
AoxI GGCC 4 cut(s) 60, 121, 126, 158
ApoI RAATTY 1 cut(s) 74
AspLEI GCGC 1 cut(s) 98
AspS9I GGNCC 1 cut(s) 122
AsuC2I CCSGG 2 cut(s) 120, 125
AsuHPI GGTGA 2 cut(s) 70, 149
AsuNHI GCTAGC 1 cut(s) 152
AvaI CYCGRG 1 cut(s) 11
BbsI GAAGAC 1 cut(s) 170
BceAI ACGGC 1 cut(s) 127
BcnI CCSGG 2 cut(s) 120, 125
BfaI CTAG 1 cut(s) 153
BisI GCNGC 1 cut(s) 144
BlsI GCNGC 1 cut(s) 145
BmcAI AGTACT 2 cut(s) 17, 86
Bme1390I CCNGG 2 cut(s) 120, 125
BmeT110I CYCGRG 1 cut(s) 11
BmgT120I GGNCC 1 cut(s) 122
BmiI GGNNCC 1 cut(s) 44
BmrFI CCNGG 2 cut(s) 120, 125
BmsI GCATC 1 cut(s) 130
BmtI GCTAGC 1 cut(s) 156
BoxI GACNNNNGTC 1 cut(s) 114
BpiI GAAGAC 1 cut(s) 170
BpuEI CTTGAG 1 cut(s) 17
BpuMI CCSGG 2 cut(s) 120, 125
BsaJI CCNNGG 1 cut(s) 174
BseDI CCNNGG 1 cut(s) 174
BseGI GGATG 1 cut(s) 112
Bsh1236I CGCG 1 cut(s) 96
BshFI GGCC 4 cut(s) 62, 123, 128, 160
BsiHKCI CYCGRG 1 cut(s) 11
BsiSI CCGG 2 cut(s) 120, 125
BslFI GGGAC 1 cut(s) 102
BsmFI GGGAC 1 cut(s) 102
BsnI GGCC 4 cut(s) 62, 123, 128, 160
BsoBI CYCGRG 1 cut(s) 11
Bsp143I GATC 1 cut(s) 51
BspACI CCGC 2 cut(s) 143, 146
BspANI GGCC 4 cut(s) 62, 123, 128, 160
BspFNI CGCG 1 cut(s) 96
BspLI GGNNCC 1 cut(s) 44
BspOI GCTAGC 1 cut(s) 156
BssECI CCNNGG 1 cut(s) 174
BssMI GATC 1 cut(s) 51
BssT1I CCWWGG 1 cut(s) 174
Bst4CI ACNGT 1 cut(s) 137
BstC8I GCNNGC 2 cut(s) 154, 158
BstDEI CTNAG 1 cut(s) 48
BstF5I GGATG 1 cut(s) 112
BstFNI CGCG 1 cut(s) 96
BstHHI GCGC 1 cut(s) 98
BstKTI GATC 1 cut(s) 54
BstMBI GATC 1 cut(s) 51
BstMWI GCNNNNNNNGC 2 cut(s) 120, 149
BstPAI GACNNNNGTC 1 cut(s) 114
BstSCI CCNGG 2 cut(s) 118, 123
BstUI CGCG 1 cut(s) 96
BstV2I GAAGAC 1 cut(s) 170
BsuRI GGCC 4 cut(s) 62, 123, 128, 160
BtsCI GGATG 1 cut(s) 112
Cac8I GCNNGC 2 cut(s) 154, 158
CfoI GCGC 1 cut(s) 98
Cfr13I GGNCC 1 cut(s) 122
CseI GACGC 1 cut(s) 34
Csp6I GTAC 3 cut(s) 16, 37, 85
CviJI RGCY 6 cut(s) 62, 123, 128, 152, 160, 172
CviKI_1 RGCY 6 cut(s) 62, 123, 128, 152, 160, 172
CviQI GTAC 3 cut(s) 16, 37, 85
DdeI CTNAG 1 cut(s) 48
DpnI GATC 1 cut(s) 53
DpnII GATC 1 cut(s) 51
Eco130I CCWWGG 1 cut(s) 174
Eco88I CYCGRG 1 cut(s) 11
EcoT14I CCWWGG 1 cut(s) 174
ErhI CCWWGG 1 cut(s) 174
FaqI GGGAC 1 cut(s) 102
Fnu4HI GCNGC 1 cut(s) 144
FokI GGATG 1 cut(s) 119
Fsp4HI GCNGC 1 cut(s) 144
FspBI CTAG 1 cut(s) 153
GlaI GCGC 1 cut(s) 97
GluI GCNGC 1 cut(s) 144
HaeIII GGCC 4 cut(s) 62, 123, 128, 160
HapII CCGG 2 cut(s) 120, 125
HgaI GACGC 1 cut(s) 34
HhaI GCGC 1 cut(s) 98
Hin6I GCGC 1 cut(s) 96
HinP1I GCGC 1 cut(s) 96
HpaII CCGG 2 cut(s) 120, 125
HphI GGTGA 2 cut(s) 70, 149
Hpy188III TCNNGA 2 cut(s) 11, 22
HpyCH4III ACNGT 1 cut(s) 137
HpyF10VI GCNNNNNNNGC 2 cut(s) 120, 149
HpyF3I CTNAG 1 cut(s) 48
HspAI GCGC 1 cut(s) 96
Kzo9I GATC 1 cut(s) 51
LpnPI CCDG 4 cut(s) 83, 133, 138, 142
LweI GCATC 1 cut(s) 130
MaeI CTAG 1 cut(s) 153
MalI GATC 1 cut(s) 53
MboI GATC 1 cut(s) 51
MboII GAAGA 1 cut(s) 175
MluCI AATT 1 cut(s) 74
MmeI TCCRAC 1 cut(s) 156
MnlI CCTC 3 cut(s) 41, 52, 139
MspI CCGG 2 cut(s) 120, 125
MspR9I CCNGG 2 cut(s) 120, 125
MvnI CGCG 1 cut(s) 96
MwoI GCNNNNNNNGC 2 cut(s) 120, 149
NciI CCSGG 2 cut(s) 120, 125
NdeII GATC 1 cut(s) 51
NheI GCTAGC 1 cut(s) 152
NlaIV GGNNCC 1 cut(s) 44
PaeR7I CTCGAG 1 cut(s) 11
PkrI GCNGC 1 cut(s) 145
PshAI GACNNNNGTC 1 cut(s) 114
PspN4I GGNNCC 1 cut(s) 44
PspPI GGNCC 1 cut(s) 122
RsaI GTAC 3 cut(s) 17, 38, 86
RsaNI GTAC 3 cut(s) 16, 37, 85
SatI GCNGC 1 cut(s) 144
Sau3AI GATC 1 cut(s) 51
Sau96I GGNCC 1 cut(s) 122
ScaI AGTACT 2 cut(s) 17, 86
ScrFI CCNGG 2 cut(s) 120, 125
SetI ASST 1 cut(s) 33
SfaNI GCATC 1 cut(s) 130
Sfr274I CTCGAG 1 cut(s) 11
SlaI CTCGAG 1 cut(s) 11
SmlI CTYRAG 2 cut(s) 11, 32
SmoI CTYRAG 2 cut(s) 11, 32
Sse9I AATT 1 cut(s) 74
SsiI CCGC 2 cut(s) 143, 146
SspMI CTAG 1 cut(s) 153
StyD4I CCNGG 2 cut(s) 118, 123
StyI CCWWGG 1 cut(s) 174
TaaI ACNGT 1 cut(s) 137
TaqI TCGA 1 cut(s) 12
TasI AATT 1 cut(s) 74
TatI WGTACW 2 cut(s) 15, 84
TauI GCSGC 1 cut(s) 146
TspDTI ATGAA 1 cut(s) 17
XapI RAATTY 1 cut(s) 74
XhoI CTCGAG 1 cut(s) 11
XspI CTAG 1 cut(s) 153
ZrmI AGTACT 2 cut(s) 17, 86
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.