Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0002427

Physical Location & Seq

Genomic Coordinates Reverse (-)

74295640 .. 74297213

Gene Structure 1574 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000021343

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGAAGTGGAACCCTAAGATCAAGGAGGCTATTACCCAGAAATTCATCGAGTACTTGCGTCGTGCTGTGGAGATTCGCGCCGTTTCGGATGATGGCAAGGCCGGACCAGCCTCCAACGGTGATGCGGCGGTGGCTAGTAGGCCTAAAACCAAGCCCAAGGACGGCGAAGGCTATGATGGGGAGGATCCCGAGCAGGCCAAGCTCCGGGACAGGCTTAATTCGGTGATTATTAGGGGAAAACCCAATTTCAAGTGGAATGATGTGGCGGGTCTCGAGAGCGGTAACCAGGCCTTGCAAGTGGCACTTGTATTGCCCGTCAAGTTCCTTACTTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000902 GO:0000904 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005768 GO:0005770 GO:0005771 GO:0005911 GO:0006629 GO:0006810 GO:0006900 GO:0006914 GO:0006996 GO:0007032 GO:0007033 GO:0007034 GO:0008104 GO:0008144 GO:0008150 GO:0008152 GO:0008202 GO:0009056 GO:0009506 GO:0009653 GO:0009888 GO:0009987 GO:0010008 GO:0010026 GO:0010090 GO:0010091 GO:0010256 GO:0012505 GO:0016020 GO:0016043 GO:0016050 GO:0016125 GO:0016192 GO:0016197 GO:0016236 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0022607 GO:0030054 GO:0030154 GO:0030554 GO:0031090 GO:0031410 GO:0031982 GO:0032502 GO:0032507 GO:0032509 GO:0032511 GO:0032553 GO:0032555 GO:0032559 GO:0032989 GO:0032991 GO:0033036 GO:0033365 GO:0034067 GO:0034613 GO:0035639 GO:0036094 GO:0036452 GO:0042592 GO:0042802 GO:0042803 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045053 GO:0045185 GO:0045324 GO:0046907 GO:0046983 GO:0048468 GO:0048856 GO:0048869 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0051235 GO:0051259 GO:0051260 GO:0051641 GO:0051649 GO:0051651 GO:0055044 GO:0055065 GO:0055067 GO:0055075 GO:0055078 GO:0055080 GO:0061024 GO:0061919 GO:0065003 GO:0065007 GO:0065008 GO:0070676 GO:0070727 GO:0071704 GO:0071840 GO:0071985 GO:0090558 GO:0090626 GO:0097159 GO:0097367 GO:0097708 GO:0098588 GO:0098771 GO:0098796 GO:0098805 GO:1901265 GO:1901360 GO:1901363 GO:1901615 GO:1902494 GO:1904949 GO:1990621

KEGG Pathways

Metabolic & Signaling

ko04144 ko04217 map04144 map04217

Pfam Domains

Protein Families

AAA MIT Vps4_C

Protein Analysis

112

Amino Acids

12.21

Weight (kDa)

9.3

Isoelectric Point (pI)

30.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002427)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08270 AT1G08270 AT2G27600
fragaria_vesca	FvH4_3g24610 FvH4_3g24610 FvH4_3g24610 FvH4_3g24610
malus_domestica	MD03G1141900.v1.1 MD11G1161300.v1.1
prunus_persica	Prupe.6G127200_v2.0.a1
pyrus_communis	pycom03g09670 pycom11g13390
rosa_chinensis	RchiOBHm_Chr2g0101721 RchiOBHm_Chr5g0044161 RchiOBHm_Chr6g0255971 RchiOBHm_Chr6g0260081 RchiOBHm_Chr7g0184771
rosa_laevigata	RLG00000009143 RLG00000014364 RLG00000021343 RLG00000035169 RLG00000036978
rosa_multiflora	Rmu_sc0000363.1_g000012 Rmu_sc0001648.1_g000029 Rmu_sc0001857.1_g000012 Rmu_sc0004300.1_g000002 Rmu_sc0009830.1_g000003
rosa_roxburghii	Rroxscaffold_2G00091250 Rroxscaffold_3G00264580 Rroxscaffold_7G00197410
rosa_rugosa	Rorug03G0333400
rosa_samantha	Rh2BG234400 Rh2CG154700 Rh5AG295900 Rh5BG309400 Rh5CG292800 Rh5CG330700 Rh6AG305600 Rh7BG180900
rosa_wichuraiana	Rw5G027360 Rw5G027430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	279
AccII	CGCG	1 cut(s)	78
AciI	CCGC	4 cut(s)	125, 128, 266, 279
AclWI	GGATC	2 cut(s)	179, 192
AcsI	RAATTY	1 cut(s)	41
AfaI	GTAC	1 cut(s)	53
AfiI	CCNNNNNNNGG	2 cut(s)	161, 204
AgsI	TTSAA	1 cut(s)	250
AjnI	CCWGG	1 cut(s)	285
AluBI	AGCT	1 cut(s)	202
AluI	AGCT	1 cut(s)	202
Alw26I	GTCTC	1 cut(s)	275
AlwI	GGATC	2 cut(s)	179, 192
Ama87I	CYCGRG	2 cut(s)	188, 272
AoxI	GGCC	4 cut(s)	99, 140, 195, 288
ApoI	RAATTY	1 cut(s)	41
AspLEI	GCGC	1 cut(s)	80
AspS9I	GGNCC	1 cut(s)	104
AsuC2I	CCSGG	1 cut(s)	206
AsuHPI	GGTGA	2 cut(s)	131, 235
AvaI	CYCGRG	2 cut(s)	188, 272
AvaII	GGWCC	1 cut(s)	104
BamHI	GGATCC	1 cut(s)	184
BccI	CCATC	2 cut(s)	86, 170
BceAI	ACGGC	2 cut(s)	65, 178
BciT130I	CCWGG	1 cut(s)	287
BcnI	CCSGG	1 cut(s)	206
BcoDI	GTCTC	1 cut(s)	275
BfaI	CTAG	1 cut(s)	135
BisI	GCNGC	1 cut(s)	126
BlsI	GCNGC	1 cut(s)	127
BmcAI	AGTACT	1 cut(s)	53
Bme1390I	CCNGG	2 cut(s)	206, 287
Bme18I	GGWCC	1 cut(s)	104
BmeT110I	CYCGRG	2 cut(s)	188, 272
BmgT120I	GGNCC	1 cut(s)	104
BmiI	GGNNCC	2 cut(s)	11, 186
BmrFI	CCNGG	2 cut(s)	206, 287
BmsI	GCATC	1 cut(s)	112
BpuMI	CCSGG	1 cut(s)	206
BsaI	GGTCTC	1 cut(s)	275
BsaJI	CCNNGG	1 cut(s)	156
Bsc4I	CCNNNNNNNGG	2 cut(s)	161, 204
BseBI	CCWGG	1 cut(s)	287
BseDI	CCNNGG	1 cut(s)	156
BseGI	GGATG	1 cut(s)	94
BseLI	CCNNNNNNNGG	2 cut(s)	161, 204
Bsh1236I	CGCG	1 cut(s)	78
BshFI	GGCC	4 cut(s)	101, 142, 197, 290
BsiHKCI	CYCGRG	2 cut(s)	188, 272
BsiSI	CCGG	2 cut(s)	102, 205
BslFI	GGGAC	1 cut(s)	221
BslI	CCNNNNNNNGG	2 cut(s)	161, 204
BsmAI	GTCTC	1 cut(s)	275
BsmFI	GGGAC	1 cut(s)	221
BsnI	GGCC	4 cut(s)	101, 142, 197, 290
Bso31I	GGTCTC	1 cut(s)	275
BsoBI	CYCGRG	2 cut(s)	188, 272
Bsp143I	GATC	2 cut(s)	18, 184
BspACI	CCGC	4 cut(s)	125, 128, 266, 279
BspANI	GGCC	4 cut(s)	101, 142, 197, 290
BspFNI	CGCG	1 cut(s)	78
BspLI	GGNNCC	2 cut(s)	11, 186
BspPI	GGATC	2 cut(s)	179, 192
BspTNI	GGTCTC	1 cut(s)	275
BsrBI	CCGCTC	1 cut(s)	279
BssECI	CCNNGG	1 cut(s)	156
BssMI	GATC	2 cut(s)	18, 184
BssT1I	CCWWGG	1 cut(s)	156
Bst2UI	CCWGG	1 cut(s)	287
Bst4CI	ACNGT	1 cut(s)	119
BstC8I	GCNNGC	1 cut(s)	195
BstDEI	CTNAG	1 cut(s)	15
BstEII	GGTNACC	1 cut(s)	281
BstF5I	GGATG	1 cut(s)	94
BstFNI	CGCG	1 cut(s)	78
BstHHI	GCGC	1 cut(s)	80
BstKTI	GATC	2 cut(s)	21, 187
BstMAI	GTCTC	1 cut(s)	275
BstMBI	GATC	2 cut(s)	18, 184
BstMWI	GCNNNNNNNGC	3 cut(s)	107, 131, 199
BstNI	CCWGG	1 cut(s)	287
BstPI	GGTNACC	1 cut(s)	281
BstSCI	CCNGG	2 cut(s)	204, 285
BstUI	CGCG	1 cut(s)	78
BstX2I	RGATCY	1 cut(s)	184
BstYI	RGATCY	1 cut(s)	184
BsuRI	GGCC	4 cut(s)	101, 142, 197, 290
BtsCI	GGATG	1 cut(s)	94
Cac8I	GCNNGC	1 cut(s)	195
CfoI	GCGC	1 cut(s)	80
Cfr13I	GGNCC	1 cut(s)	104
CseI	GACGC	1 cut(s)	47
Csp6I	GTAC	1 cut(s)	52
CviQI	GTAC	1 cut(s)	52
DdeI	CTNAG	1 cut(s)	15
DpnI	GATC	2 cut(s)	20, 186
DpnII	GATC	2 cut(s)	18, 184
Eco130I	CCWWGG	1 cut(s)	156
Eco147I	AGGCCT	2 cut(s)	142, 290
Eco31I	GGTCTC	1 cut(s)	275
Eco47I	GGWCC	1 cut(s)	104
Eco88I	CYCGRG	2 cut(s)	188, 272
Eco91I	GGTNACC	1 cut(s)	281
EcoO65I	GGTNACC	1 cut(s)	281
EcoRII	CCWGG	1 cut(s)	285
EcoT14I	CCWWGG	1 cut(s)	156
ErhI	CCWWGG	1 cut(s)	156
FaiI	YATR	1 cut(s)	174
FalI	AAGNNNNNCTT	2 cut(s)	288, 320
FaqI	GGGAC	1 cut(s)	221
FauI	CCCGC	1 cut(s)	259
Fnu4HI	GCNGC	1 cut(s)	126
FokI	GGATG	1 cut(s)	101
Fsp4HI	GCNGC	1 cut(s)	126
FspBI	CTAG	1 cut(s)	135
GlaI	GCGC	1 cut(s)	79
GluI	GCNGC	1 cut(s)	126
HaeIII	GGCC	4 cut(s)	101, 142, 197, 290
HapII	CCGG	2 cut(s)	102, 205
HgaI	GACGC	1 cut(s)	47
HhaI	GCGC	1 cut(s)	80
Hin6I	GCGC	1 cut(s)	78
HinP1I	GCGC	1 cut(s)	78
HinfI	GANTC	1 cut(s)	73
HpaII	CCGG	2 cut(s)	102, 205
HphI	GGTGA	2 cut(s)	131, 235
Hpy188I	TCNGA	1 cut(s)	88
Hpy188III	TCNNGA	3 cut(s)	188, 272, 274
Hpy99I	CGWCG	1 cut(s)	63
HpyAV	CCTTC	1 cut(s)	161
HpyCH4III	ACNGT	1 cut(s)	119
HpyCH4V	TGCA	1 cut(s)	295
HpyF10VI	GCNNNNNNNGC	3 cut(s)	107, 131, 199
HpyF3I	CTNAG	1 cut(s)	15
HspAI	GCGC	1 cut(s)	78
Kzo9I	GATC	2 cut(s)	18, 184
LmnI	GCTCC	1 cut(s)	207
LpnPI	CCDG	8 cut(s)	50, 115, 120, 179, 196, 218, 272, 299
LweI	GCATC	1 cut(s)	112
MaeI	CTAG	1 cut(s)	135
MaeIII	GTNAC	1 cut(s)	281
MalI	GATC	2 cut(s)	20, 186
MbiI	CCGCTC	1 cut(s)	279
MboI	GATC	2 cut(s)	18, 184
MflI	RGATCY	1 cut(s)	184
MluCI	AATT	3 cut(s)	41, 217, 244
MmeI	TCCRAC	1 cut(s)	138
MnlI	CCTC	3 cut(s)	19, 121, 175
MseI	TTAA	1 cut(s)	216
MspI	CCGG	2 cut(s)	102, 205
MspR9I	CCNGG	2 cut(s)	206, 287
MvaI	CCWGG	1 cut(s)	287
MvnI	CGCG	1 cut(s)	78
MwoI	GCNNNNNNNGC	3 cut(s)	107, 131, 199
NciI	CCSGG	1 cut(s)	206
NdeII	GATC	2 cut(s)	18, 184
NlaIV	GGNNCC	2 cut(s)	11, 186
PaeR7I	CTCGAG	1 cut(s)	272
PceI	AGGCCT	2 cut(s)	142, 290
PfeI	GAWTC	1 cut(s)	73
PfoI	TCCNGGA	1 cut(s)	204
PkrI	GCNGC	1 cut(s)	127
Psp6I	CCWGG	1 cut(s)	285
PspEI	GGTNACC	1 cut(s)	281
PspGI	CCWGG	1 cut(s)	285
PspN4I	GGNNCC	2 cut(s)	11, 186
PspPI	GGNCC	1 cut(s)	104
PsuI	RGATCY	1 cut(s)	184
RsaI	GTAC	1 cut(s)	53
RsaNI	GTAC	1 cut(s)	52
SaqAI	TTAA	1 cut(s)	216
SatI	GCNGC	1 cut(s)	126
Sau3AI	GATC	2 cut(s)	18, 184
Sau96I	GGNCC	1 cut(s)	104
ScaI	AGTACT	1 cut(s)	53
ScrFI	CCNGG	2 cut(s)	206, 287
SetI	ASST	1 cut(s)	204
SfaNI	GCATC	1 cut(s)	112
Sfr274I	CTCGAG	1 cut(s)	272
SinI	GGWCC	1 cut(s)	104
SlaI	CTCGAG	1 cut(s)	272
SmlI	CTYRAG	1 cut(s)	272
SmoI	CTYRAG	1 cut(s)	272
Sse9I	AATT	3 cut(s)	41, 217, 244
SseBI	AGGCCT	2 cut(s)	142, 290
SsiI	CCGC	4 cut(s)	125, 128, 266, 279
SspMI	CTAG	1 cut(s)	135
StuI	AGGCCT	2 cut(s)	142, 290
StyD4I	CCNGG	2 cut(s)	204, 285
StyI	CCWWGG	1 cut(s)	156
TaaI	ACNGT	1 cut(s)	119
TaqI	TCGA	2 cut(s)	48, 273
TasI	AATT	3 cut(s)	41, 217, 244
TatI	WGTACW	1 cut(s)	51
TauI	GCSGC	1 cut(s)	128
TfiI	GAWTC	1 cut(s)	73
Tru1I	TTAA	1 cut(s)	216
Tru9I	TTAA	1 cut(s)	216
TspDTI	ATGAA	2 cut(s)	17, 34
VpaK11BI	GGWCC	1 cut(s)	104
XapI	RAATTY	1 cut(s)	41
XhoI	CTCGAG	1 cut(s)	272
XspI	CTAG	1 cut(s)	135
ZrmI	AGTACT	1 cut(s)	53

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.