Rorug03G0333400

Belongs to the AAA ATPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0002427
Physical Location & Seq
Forward (+)
39040584 .. 39041392
809 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0333400.1

Sequence Viewer

Length: 594 bp
ATGGAACCACAACAACAGCAACCAACAGAGGAGGGAGGAAACACCCAAGCAGCTGGAAGTAGTGCCAACATGGATTTCTGGCGAAGCCGTACCAGGTGGATTCCTACTCCAGAACAAATAAGAATCCTCAAGGATCTTTACTATGTCAAGGGATTTAAGTGCCCAACTACAGAGCAGATTCACGAGATCTGTCTCCAGCTGAACCAGTATGGGTATGTTGAGGGTAAGAACATTTACTTTTGGTTCCAGAACGTCAGGGCTCGAGAGAAGCAGATGAATAGGTGTAATCAGGCTGCTCCAGTGCCCATGAGAACTAGTTCTCTTGCTGGTGGATCCATTGACATCAATTTTGGGTCCACTAGTTCTACTGATGATGGAGGACAAACATCCCTGCAACAACGAGGAGGAGATCACCAGGAGGTTCAAACTCTTCCTCTGTTCCCCGTGCACGGCGAGGACGTCTTTGGTAACCTGAAGGCTACTTCCGAGGAAGGTAGCGCTTTTGGTTACTATTCTGGTGGCTCAGGCGGTTACCACAGTGGCTCAAACGTTTCTCTTGAGCTCAGCCTCAACCCATCCGGAGCTGCTGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0000902 GO:0000904 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005768 GO:0005770 GO:0005771 GO:0005911 GO:0006629 GO:0006810 GO:0006900 GO:0006914 GO:0006996 GO:0007032 GO:0007033 GO:0007034 GO:0008104 GO:0008144 GO:0008150 GO:0008152 GO:0008202 GO:0009056 GO:0009506 GO:0009653 GO:0009888 GO:0009987 GO:0010008 GO:0010026 GO:0010090 GO:0010091 GO:0010256 GO:0012505 GO:0016020 GO:0016043 GO:0016050 GO:0016125 GO:0016192 GO:0016197 GO:0016236 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0022607 GO:0030054 GO:0030154 GO:0030554 GO:0031090 GO:0031410 GO:0031982 GO:0032502 GO:0032507 GO:0032509 GO:0032511 GO:0032553 GO:0032555 GO:0032559 GO:0032989 GO:0032991 GO:0033036 GO:0033365 GO:0034067 GO:0034613 GO:0035639 GO:0036094 GO:0036452 GO:0042592 GO:0042802 GO:0042803 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045053 GO:0045185 GO:0045324 GO:0046907 GO:0046983 GO:0048468 GO:0048856 GO:0048869 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0051235 GO:0051259 GO:0051260 GO:0051641 GO:0051649 GO:0051651 GO:0055044 GO:0055065 GO:0055067 GO:0055075 GO:0055078 GO:0055080 GO:0061024 GO:0061919 GO:0065003 GO:0065007 GO:0065008 GO:0070676 GO:0070727 GO:0071704 GO:0071840 GO:0071985 GO:0090558 GO:0090626 GO:0097159 GO:0097367 GO:0097708 GO:0098588 GO:0098771 GO:0098796 GO:0098805 GO:1901265 GO:1901360 GO:1901363 GO:1901615 GO:1902494 GO:1904949 GO:1990621
KEGG Pathways
Metabolic & Signaling
ko04144 ko04217 map04144 map04217
Pfam Domains
Protein Families
AAA MIT Vps4_C

Protein Analysis

197

Amino Acids

21.64

Weight (kDa)

5.21

Isoelectric Point (pI)

49.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 30 - 91 3.7e-09 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 462
AccIII TCCGGA 1 cut(s) 578
AciI CCGC 1 cut(s) 528
AclI AACGTT 1 cut(s) 549
AclWI GGATC 3 cut(s) 141, 327, 340
AcuI CTGAAG 1 cut(s) 494
AcyI GRCGYC 1 cut(s) 459
AfaI GTAC 1 cut(s) 91
AfeI AGCGCT 1 cut(s) 499
AfiI CCNNNNNNNGG 1 cut(s) 449
AgsI TTSAA 1 cut(s) 425
AhlI ACTAGT 2 cut(s) 314, 359
AjnI CCWGG 2 cut(s) 92, 414
AjuI GAANNNNNNNTTGG 2 cut(s) 59, 91
AluBI AGCT 4 cut(s) 53, 199, 562, 584
AluI AGCT 4 cut(s) 53, 199, 562, 584
Alw21I GWGCWC 2 cut(s) 450, 564
Alw26I GTCTC 1 cut(s) 197
Alw44I GTGCAC 1 cut(s) 446
AlwI GGATC 3 cut(s) 141, 327, 340
Ama87I CYCGRG 1 cut(s) 261
Aor13HI TCCGGA 1 cut(s) 578
Aor51HI AGCGCT 1 cut(s) 499
ApaLI GTGCAC 1 cut(s) 446
ApeKI GCWGC 3 cut(s) 50, 293, 584
ArsI GACNNNNNNTTYG 2 cut(s) 332, 364
Asp700I GAANNNNTTC 1 cut(s) 316
AspLEI GCGC 1 cut(s) 500
AspS9I GGNCC 1 cut(s) 354
AsuHPI GGTGA 1 cut(s) 404
AvaI CYCGRG 1 cut(s) 261
AvaII GGWCC 1 cut(s) 354
BaeGI GKGCMC 3 cut(s) 164, 306, 450
BamHI GGATCC 1 cut(s) 332
BanII GRGCYC 2 cut(s) 262, 564
BauI CACGAG 1 cut(s) 182
Bbv12I GWGCWC 2 cut(s) 450, 564
BbvI GCAGC 3 cut(s) 62, 280, 571
BccI CCATC 2 cut(s) 368, 583
BceAI ACGGC 2 cut(s) 72, 466
BciT130I CCWGG 2 cut(s) 94, 416
BcoDI GTCTC 1 cut(s) 197
BcuI ACTAGT 2 cut(s) 314, 359
BfaI CTAG 3 cut(s) 315, 360, 592
BfmI CTRYAG 1 cut(s) 168
BfoI RGCGCY 1 cut(s) 501
BglII AGATCT 1 cut(s) 186
BisI GCNGC 3 cut(s) 51, 294, 585
BlpI GCTNAGC 1 cut(s) 563
BlsI GCNGC 3 cut(s) 52, 295, 586
Bme1390I CCNGG 2 cut(s) 94, 416
Bme18I GGWCC 1 cut(s) 354
BmeT110I CYCGRG 1 cut(s) 261
BmgT120I GGNCC 1 cut(s) 354
BmiI GGNNCC 4 cut(s) 6, 245, 334, 355
BmrFI CCNGG 2 cut(s) 94, 416
BpmI CTGGAG 3 cut(s) 93, 179, 282
Bpu10I CCTNAGC 1 cut(s) 523
Bpu1102I GCTNAGC 1 cut(s) 563
BpuEI CTTGAG 2 cut(s) 113, 578
BsaHI GRCGYC 1 cut(s) 459
BsaJI CCNNGG 1 cut(s) 486
BsaWI WCCGGW 1 cut(s) 578
Bsc4I CCNNNNNNNGG 1 cut(s) 449
Bse1I ACTGG 2 cut(s) 205, 299
BseAI TCCGGA 1 cut(s) 578
BseBI CCWGG 2 cut(s) 94, 416
BseDI CCNNGG 1 cut(s) 486
BseGI GGATG 2 cut(s) 386, 575
BseLI CCNNNNNNNGG 1 cut(s) 449
BseMII CTCAG 2 cut(s) 537, 577
BseNI ACTGG 2 cut(s) 205, 299
BseRI GAGGAG 3 cut(s) 44, 417, 420
BseSI GKGCMC 3 cut(s) 164, 306, 450
BseXI GCAGC 3 cut(s) 62, 280, 571
BsiHKAI GWGCWC 2 cut(s) 450, 564
BsiHKCI CYCGRG 1 cut(s) 261
BsiSI CCGG 1 cut(s) 579
BslI CCNNNNNNNGG 1 cut(s) 449
BsmAI GTCTC 1 cut(s) 197
BsoBI CYCGRG 1 cut(s) 261
Bsp1286I GDGCHC 5 cut(s) 164, 262, 306, 450, 564
Bsp13I TCCGGA 1 cut(s) 578
Bsp143I GATC 4 cut(s) 133, 186, 332, 409
Bsp1720I GCTNAGC 1 cut(s) 563
BspACI CCGC 1 cut(s) 528
BspCNI CTCAG 2 cut(s) 536, 576
BspEI TCCGGA 1 cut(s) 578
BspLI GGNNCC 4 cut(s) 6, 245, 334, 355
BspPI GGATC 3 cut(s) 141, 327, 340
BsrI ACTGG 2 cut(s) 205, 299
BssECI CCNNGG 1 cut(s) 486
BssMI GATC 4 cut(s) 133, 186, 332, 409
BssNI GRCGYC 1 cut(s) 459
BssSI CACGAG 1 cut(s) 182
Bst2BI CACGAG 1 cut(s) 182
Bst2UI CCWGG 2 cut(s) 94, 416
Bst4CI ACNGT 1 cut(s) 539
Bst6I CTCTTC 1 cut(s) 435
BstACI GRCGYC 1 cut(s) 459
BstDEI CTNAG 2 cut(s) 523, 563
BstEII GGTNACC 2 cut(s) 467, 530
BstF5I GGATG 2 cut(s) 386, 575
BstH2I RGCGCY 1 cut(s) 501
BstHHI GCGC 1 cut(s) 500
BstKTI GATC 4 cut(s) 136, 189, 335, 412
BstMAI GTCTC 1 cut(s) 197
BstMBI GATC 4 cut(s) 133, 186, 332, 409
BstNI CCWGG 2 cut(s) 94, 416
BstPI GGTNACC 2 cut(s) 467, 530
BstSCI CCNGG 2 cut(s) 92, 414
BstSFI CTRYAG 1 cut(s) 168
BstSLI GKGCMC 3 cut(s) 164, 306, 450
BstV1I GCAGC 3 cut(s) 62, 280, 571
BstX2I RGATCY 3 cut(s) 133, 186, 332
BstXI CCANNNNNNTGG 1 cut(s) 53
BstYI RGATCY 3 cut(s) 133, 186, 332
BtsCI GGATG 2 cut(s) 386, 575
BtsIMutI CAGTG 2 cut(s) 306, 544
CfoI GCGC 1 cut(s) 500
Cfr13I GGNCC 1 cut(s) 354
CsiI ACCWGGT 1 cut(s) 92
Csp6I GTAC 1 cut(s) 90
CviAII CATG 2 cut(s) 70, 307
CviQI GTAC 1 cut(s) 90
DdeI CTNAG 2 cut(s) 523, 563
DpnI GATC 4 cut(s) 135, 188, 334, 411
DpnII GATC 4 cut(s) 133, 186, 332, 409
Eam1104I CTCTTC 1 cut(s) 435
EarI CTCTTC 1 cut(s) 435
Ecl136II GAGCTC 1 cut(s) 562
Eco24I GRGCYC 2 cut(s) 262, 564
Eco47I GGWCC 1 cut(s) 354
Eco47III AGCGCT 1 cut(s) 499
Eco53kI GAGCTC 1 cut(s) 562
Eco57I CTGAAG 1 cut(s) 494
Eco88I CYCGRG 1 cut(s) 261
Eco91I GGTNACC 2 cut(s) 467, 530
EcoICRI GAGCTC 1 cut(s) 562
EcoO65I GGTNACC 2 cut(s) 467, 530
EcoRII CCWGG 2 cut(s) 92, 414
EcoT38I GRGCYC 2 cut(s) 262, 564
FaeI CATG 2 cut(s) 73, 310
FaiI YATR 5 cut(s) 71, 144, 210, 216, 308
FatI CATG 2 cut(s) 69, 306
Fnu4HI GCNGC 3 cut(s) 51, 294, 585
FokI GGATG 2 cut(s) 373, 562
FriOI GRGCYC 2 cut(s) 262, 564
Fsp4HI GCNGC 3 cut(s) 51, 294, 585
FspBI CTAG 3 cut(s) 315, 360, 592
GlaI GCGC 1 cut(s) 499
GluI GCNGC 3 cut(s) 51, 294, 585
GsuI CTGGAG 3 cut(s) 93, 179, 282
HaeII RGCGCY 1 cut(s) 501
HapII CCGG 1 cut(s) 579
HhaI GCGC 1 cut(s) 500
Hin1I GRCGYC 1 cut(s) 459
Hin1II CATG 2 cut(s) 73, 310
Hin6I GCGC 1 cut(s) 498
HinP1I GCGC 1 cut(s) 498
HinfI GANTC 3 cut(s) 100, 123, 178
HpaII CCGG 1 cut(s) 579
HphI GGTGA 1 cut(s) 404
Hpy166II GTNNAC 2 cut(s) 357, 448
Hpy188I TCNGA 1 cut(s) 487
Hpy188III TCNNGA 6 cut(s) 110, 182, 247, 263, 557, 579
Hpy8I GTNNAC 2 cut(s) 357, 448
HpyAV CCTTC 2 cut(s) 469, 485
HpyCH4III ACNGT 1 cut(s) 539
HpyCH4IV ACGT 3 cut(s) 252, 459, 549
HpyCH4V TGCA 2 cut(s) 394, 448
HpyF3I CTNAG 2 cut(s) 523, 563
HpySE526I ACGT 3 cut(s) 252, 459, 549
Hsp92I GRCGYC 1 cut(s) 459
Hsp92II CATG 2 cut(s) 73, 310
HspAI GCGC 1 cut(s) 498
Kpn2I TCCGGA 1 cut(s) 578
Kzo9I GATC 4 cut(s) 133, 186, 332, 409
LmnI GCTCC 2 cut(s) 301, 581
Lsp1109I GCAGC 3 cut(s) 62, 280, 571
MabI ACCWGGT 1 cut(s) 92
MaeI CTAG 3 cut(s) 315, 360, 592
MaeII ACGT 3 cut(s) 252, 459, 549
MaeIII GTNAC 3 cut(s) 467, 506, 530
MalI GATC 4 cut(s) 135, 188, 334, 411
MboI GATC 4 cut(s) 133, 186, 332, 409
MboII GAAGA 1 cut(s) 422
MflI RGATCY 3 cut(s) 133, 186, 332
MhlI GDGCHC 5 cut(s) 164, 262, 306, 450, 564
MluCI AATT 1 cut(s) 346
MroI TCCGGA 1 cut(s) 578
MroXI GAANNNNTTC 1 cut(s) 316
MseI TTAA 1 cut(s) 156
MspA1I CMGCKG 2 cut(s) 53, 199
MspI CCGG 1 cut(s) 579
MspR9I CCNGG 2 cut(s) 94, 416
MvaI CCWGG 2 cut(s) 94, 416
NdeII GATC 4 cut(s) 133, 186, 332, 409
NlaIII CATG 2 cut(s) 73, 310
NlaIV GGNNCC 4 cut(s) 6, 245, 334, 355
PaeR7I CTCGAG 1 cut(s) 261
PcsI WCGNNNNNNNCGW 1 cut(s) 456
PdmI GAANNNNTTC 1 cut(s) 316
PfeI GAWTC 3 cut(s) 100, 123, 178
PkrI GCNGC 3 cut(s) 52, 295, 586
Psp124BI GAGCTC 1 cut(s) 564
Psp1406I AACGTT 1 cut(s) 549
Psp6I CCWGG 2 cut(s) 92, 414
PspEI GGTNACC 2 cut(s) 467, 530
PspGI CCWGG 2 cut(s) 92, 414
PspN4I GGNNCC 4 cut(s) 6, 245, 334, 355
PspPI GGNCC 1 cut(s) 354
PsuI RGATCY 3 cut(s) 133, 186, 332
PvuII CAGCTG 2 cut(s) 53, 199
RsaI GTAC 1 cut(s) 91
RsaNI GTAC 1 cut(s) 90
SacI GAGCTC 1 cut(s) 564
SaqAI TTAA 1 cut(s) 156
SatI GCNGC 3 cut(s) 51, 294, 585
Sau3AI GATC 4 cut(s) 133, 186, 332, 409
Sau96I GGNCC 1 cut(s) 354
ScrFI CCNGG 2 cut(s) 94, 416
SduI GDGCHC 5 cut(s) 164, 262, 306, 450, 564
SexAI ACCWGGT 1 cut(s) 92
SfcI CTRYAG 1 cut(s) 168
Sfr274I CTCGAG 1 cut(s) 261
SinI GGWCC 1 cut(s) 354
SlaI CTCGAG 1 cut(s) 261
SmlI CTYRAG 3 cut(s) 128, 261, 557
SmoI CTYRAG 3 cut(s) 128, 261, 557
SpeI ACTAGT 2 cut(s) 314, 359
Sse9I AATT 1 cut(s) 346
SsiI CCGC 1 cut(s) 528
SspMI CTAG 3 cut(s) 315, 360, 592
SstI GAGCTC 1 cut(s) 564
StyD4I CCNGG 2 cut(s) 92, 414
TaaI ACNGT 1 cut(s) 539
TaiI ACGT 3 cut(s) 255, 462, 552
TaqI TCGA 1 cut(s) 262
TasI AATT 1 cut(s) 346
TfiI GAWTC 3 cut(s) 100, 123, 178
Tru1I TTAA 1 cut(s) 156
Tru9I TTAA 1 cut(s) 156
TscAI CASTG 2 cut(s) 306, 544
TseI GCWGC 3 cut(s) 50, 293, 584
TspDTI ATGAA 1 cut(s) 290
TspRI CASTG 2 cut(s) 306, 544
VneI GTGCAC 1 cut(s) 446
VpaK11BI GGWCC 1 cut(s) 354
XhoI CTCGAG 1 cut(s) 261
XmnI GAANNNNTTC 1 cut(s) 316
XspI CTAG 3 cut(s) 315, 360, 592
ZraI GACGTC 1 cut(s) 460
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.