Rmu_sc0000363.1_g000012

Belongs to the AAA ATPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000363.1
OG0002427
Physical Location & Seq
Forward (+)
61061 .. 61288
228 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000363.1_g000012.1.cds

Sequence Viewer

Length: 228 bp
atgcacctcaagtacgagaaccctaagatcaaggaggctattacccagaaattcaccgagtacatgcgtcgcgctgtggagatttgctcccttttggatgatggcagggccggcccggcctccaaaggtgatgcagaggtggctagtagaccgaaaaccaagcccaaggacggcgaaggcgatgacagggaggatcaggagcaggccaagctccgggacggggcttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0000902 GO:0000904 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005768 GO:0005770 GO:0005771 GO:0005911 GO:0006629 GO:0006810 GO:0006900 GO:0006914 GO:0006996 GO:0007032 GO:0007033 GO:0007034 GO:0008104 GO:0008144 GO:0008150 GO:0008152 GO:0008202 GO:0009056 GO:0009506 GO:0009653 GO:0009888 GO:0009987 GO:0010008 GO:0010026 GO:0010090 GO:0010091 GO:0010256 GO:0012505 GO:0016020 GO:0016043 GO:0016050 GO:0016125 GO:0016192 GO:0016197 GO:0016236 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0022607 GO:0030054 GO:0030154 GO:0030554 GO:0031090 GO:0031410 GO:0031982 GO:0032502 GO:0032507 GO:0032509 GO:0032511 GO:0032553 GO:0032555 GO:0032559 GO:0032989 GO:0032991 GO:0033036 GO:0033365 GO:0034067 GO:0034613 GO:0035639 GO:0036094 GO:0036452 GO:0042592 GO:0042802 GO:0042803 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045053 GO:0045185 GO:0045324 GO:0046907 GO:0046983 GO:0048468 GO:0048856 GO:0048869 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0051235 GO:0051259 GO:0051260 GO:0051641 GO:0051649 GO:0051651 GO:0055044 GO:0055065 GO:0055067 GO:0055075 GO:0055078 GO:0055080 GO:0061024 GO:0061919 GO:0065003 GO:0065007 GO:0065008 GO:0070676 GO:0070727 GO:0071704 GO:0071840 GO:0071985 GO:0090558 GO:0090626 GO:0097159 GO:0097367 GO:0097708 GO:0098588 GO:0098771 GO:0098796 GO:0098805 GO:1901265 GO:1901360 GO:1901363 GO:1901615 GO:1902494 GO:1904949 GO:1990621
KEGG Pathways
Metabolic & Signaling
ko04144 ko04217 map04144 map04217
Pfam Domains
Protein Families
AAA MIT Vps4_C

Protein Analysis

75

Amino Acids

8.39

Weight (kDa)

5.82

Isoelectric Point (pI)

40.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 148
AccII CGCG 1 cut(s) 72
AclWI GGATC 1 cut(s) 201
AcsI RAATTY 1 cut(s) 50
AfaI GTAC 2 cut(s) 14, 62
AfiI CCNNNNNNNGG 3 cut(s) 170, 213, 220
AluBI AGCT 1 cut(s) 211
AluI AGCT 1 cut(s) 211
AlwI GGATC 1 cut(s) 201
AoxI GGCC 4 cut(s) 108, 112, 117, 204
ApoI RAATTY 1 cut(s) 50
AspLEI GCGC 1 cut(s) 74
AspS9I GGNCC 2 cut(s) 108, 113
AsuC2I CCSGG 2 cut(s) 116, 215
AsuHPI GGTGA 2 cut(s) 46, 140
BccI CCATC 1 cut(s) 95
BceAI ACGGC 1 cut(s) 187
BcnI CCSGG 2 cut(s) 116, 215
BfaI CTAG 1 cut(s) 144
BglI GCCNNNNNGGC 1 cut(s) 116
Bme1390I CCNGG 2 cut(s) 116, 215
BmgT120I GGNCC 2 cut(s) 108, 113
BmrFI CCNGG 2 cut(s) 116, 215
BmsI GCATC 1 cut(s) 121
BplI GAGNNNNNCTC 2 cut(s) 71, 103
BpuMI CCSGG 2 cut(s) 116, 215
BsaJI CCNNGG 1 cut(s) 165
Bsc4I CCNNNNNNNGG 3 cut(s) 170, 213, 220
Bse118I RCCGGY 1 cut(s) 110
BseDI CCNNGG 1 cut(s) 165
BseGI GGATG 1 cut(s) 103
BseLI CCNNNNNNNGG 3 cut(s) 170, 213, 220
Bsh1236I CGCG 1 cut(s) 72
BshFI GGCC 4 cut(s) 110, 114, 119, 206
BsiSI CCGG 3 cut(s) 111, 116, 214
BslI CCNNNNNNNGG 3 cut(s) 170, 213, 220
BsnI GGCC 4 cut(s) 110, 114, 119, 206
Bsp143I GATC 2 cut(s) 27, 193
BspANI GGCC 4 cut(s) 110, 114, 119, 206
BspFNI CGCG 1 cut(s) 72
BspPI GGATC 1 cut(s) 201
BsrFI RCCGGY 1 cut(s) 110
BssAI RCCGGY 1 cut(s) 110
BssECI CCNNGG 1 cut(s) 165
BssMI GATC 2 cut(s) 27, 193
BssT1I CCWWGG 1 cut(s) 165
BstC8I GCNNGC 2 cut(s) 112, 204
BstDEI CTNAG 1 cut(s) 24
BstF5I GGATG 1 cut(s) 103
BstFNI CGCG 1 cut(s) 72
BstHHI GCGC 1 cut(s) 74
BstKTI GATC 2 cut(s) 30, 196
BstMBI GATC 2 cut(s) 27, 193
BstMWI GCNNNNNNNGC 4 cut(s) 111, 116, 140, 208
BstNSI RCATGY 1 cut(s) 67
BstSCI CCNGG 2 cut(s) 114, 213
BstUI CGCG 1 cut(s) 72
BsuRI GGCC 4 cut(s) 110, 114, 119, 206
BtgZI GCGATG 1 cut(s) 195
BtsCI GGATG 1 cut(s) 103
Cac8I GCNNGC 2 cut(s) 112, 204
CfoI GCGC 1 cut(s) 74
Cfr10I RCCGGY 1 cut(s) 110
Cfr13I GGNCC 2 cut(s) 108, 113
CseI GACGC 1 cut(s) 56
Csp6I GTAC 2 cut(s) 13, 61
CviAII CATG 1 cut(s) 64
CviJI RGCY 9 cut(s) 38, 110, 114, 119, 143, 163, 206, 211, 224
CviKI_1 RGCY 9 cut(s) 38, 110, 114, 119, 143, 163, 206, 211, 224
CviQI GTAC 2 cut(s) 13, 61
DdeI CTNAG 1 cut(s) 24
DpnI GATC 2 cut(s) 29, 195
DpnII GATC 2 cut(s) 27, 193
Eco130I CCWWGG 1 cut(s) 165
EcoT14I CCWWGG 1 cut(s) 165
ErhI CCWWGG 1 cut(s) 165
FaeI CATG 1 cut(s) 67
FaiI YATR 1 cut(s) 65
FatI CATG 1 cut(s) 63
FblI GTMKAC 1 cut(s) 148
FokI GGATG 1 cut(s) 110
FseI GGCCGGCC 1 cut(s) 114
FspBI CTAG 1 cut(s) 144
GlaI GCGC 1 cut(s) 73
HaeIII GGCC 4 cut(s) 110, 114, 119, 206
HapII CCGG 3 cut(s) 111, 116, 214
HgaI GACGC 1 cut(s) 56
HhaI GCGC 1 cut(s) 74
Hin1II CATG 1 cut(s) 67
Hin6I GCGC 1 cut(s) 72
HinP1I GCGC 1 cut(s) 72
HpaII CCGG 3 cut(s) 111, 116, 214
HphI GGTGA 2 cut(s) 46, 140
Hpy166II GTNNAC 1 cut(s) 149
Hpy188III TCNNGA 1 cut(s) 197
Hpy8I GTNNAC 1 cut(s) 149
Hpy99I CGWCG 1 cut(s) 72
HpyAV CCTTC 1 cut(s) 170
HpyCH4V TGCA 2 cut(s) 4, 134
HpyF10VI GCNNNNNNNGC 4 cut(s) 111, 116, 140, 208
HpyF3I CTNAG 1 cut(s) 24
Hsp92II CATG 1 cut(s) 67
HspAI GCGC 1 cut(s) 72
KroI GCCGGC 1 cut(s) 110
KroNI GCCGGC 1 cut(s) 112
Kzo9I GATC 2 cut(s) 27, 193
LmnI GCTCC 3 cut(s) 92, 199, 216
LpnPI CCDG 7 cut(s) 59, 91, 124, 129, 172, 182, 188
LweI GCATC 1 cut(s) 121
MaeI CTAG 1 cut(s) 144
MalI GATC 2 cut(s) 29, 195
MboI GATC 2 cut(s) 27, 193
MluCI AATT 1 cut(s) 50
MnlI CCTC 5 cut(s) 17, 28, 130, 130, 184
MroNI GCCGGC 1 cut(s) 110
MseI TTAA 1 cut(s) 226
MspI CCGG 3 cut(s) 111, 116, 214
MspR9I CCNGG 2 cut(s) 116, 215
MvnI CGCG 1 cut(s) 72
MwoI GCNNNNNNNGC 4 cut(s) 111, 116, 140, 208
NaeI GCCGGC 1 cut(s) 112
NciI CCSGG 2 cut(s) 116, 215
NdeII GATC 2 cut(s) 27, 193
NgoMIV GCCGGC 1 cut(s) 110
NlaIII CATG 1 cut(s) 67
NspI RCATGY 1 cut(s) 67
PcsI WCGNNNNNNNCGW 1 cut(s) 177
PdiI GCCGGC 1 cut(s) 112
PfoI TCCNGGA 1 cut(s) 213
PspPI GGNCC 2 cut(s) 108, 113
RigI GGCCGGCC 1 cut(s) 114
RsaI GTAC 2 cut(s) 14, 62
RsaNI GTAC 2 cut(s) 13, 61
SaqAI TTAA 1 cut(s) 226
Sau3AI GATC 2 cut(s) 27, 193
Sau96I GGNCC 2 cut(s) 108, 113
ScrFI CCNGG 2 cut(s) 116, 215
SetI ASST 4 cut(s) 9, 130, 141, 213
SfaNI GCATC 1 cut(s) 121
SfiI GGCCNNNNNGGCC 1 cut(s) 116
SmlI CTYRAG 1 cut(s) 8
SmoI CTYRAG 1 cut(s) 8
Sse9I AATT 1 cut(s) 50
SspMI CTAG 1 cut(s) 144
StyD4I CCNGG 2 cut(s) 114, 213
StyI CCWWGG 1 cut(s) 165
TaqII GACCGA 1 cut(s) 166
TasI AATT 1 cut(s) 50
TatI WGTACW 1 cut(s) 60
Tru1I TTAA 1 cut(s) 226
Tru9I TTAA 1 cut(s) 226
XapI RAATTY 1 cut(s) 50
XceI RCATGY 1 cut(s) 67
XmiI GTMKAC 1 cut(s) 148
XspI CTAG 1 cut(s) 144
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.