Rh2CG154700

Belongs to the AAA ATPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0002427
Physical Location & Seq
Forward (+)
13433008 .. 13434053
1046 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG154700.1

Sequence Viewer

Length: 279 bp
ATGGAGATTCGTATCATTTTGGATGACGACGGTCCCAGCCCGGCCTCTAACGGTGATGCTGCGGTGGTTACTAGTCTGAAGACCAAGCTCCGAGCCCGGCTTAATTTGCCGGTCAAGTTCCCTCAGTTCTTTACTGTATCATGTTACACTCTTTCTCAGCCCTCAAGCTTCTTTGTAAAAGCTTTAATGTTTTGCACCATAAGCTGTCTAGTGGGTCCCCAAGTCTCTTGCAACTTTATGTGGGTAAGTTTTCTTCAAATTATTTCATTGTCTGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0000902 GO:0000904 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005768 GO:0005770 GO:0005771 GO:0005911 GO:0006629 GO:0006810 GO:0006900 GO:0006914 GO:0006996 GO:0007032 GO:0007033 GO:0007034 GO:0008104 GO:0008144 GO:0008150 GO:0008152 GO:0008202 GO:0009056 GO:0009506 GO:0009653 GO:0009888 GO:0009987 GO:0010008 GO:0010026 GO:0010090 GO:0010091 GO:0010256 GO:0012505 GO:0016020 GO:0016043 GO:0016050 GO:0016125 GO:0016192 GO:0016197 GO:0016236 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0022607 GO:0030054 GO:0030154 GO:0030554 GO:0031090 GO:0031410 GO:0031982 GO:0032502 GO:0032507 GO:0032509 GO:0032511 GO:0032553 GO:0032555 GO:0032559 GO:0032989 GO:0032991 GO:0033036 GO:0033365 GO:0034067 GO:0034613 GO:0035639 GO:0036094 GO:0036452 GO:0042592 GO:0042802 GO:0042803 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045053 GO:0045185 GO:0045324 GO:0046907 GO:0046983 GO:0048468 GO:0048856 GO:0048869 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0051235 GO:0051259 GO:0051260 GO:0051641 GO:0051649 GO:0051651 GO:0055044 GO:0055065 GO:0055067 GO:0055075 GO:0055078 GO:0055080 GO:0061024 GO:0061919 GO:0065003 GO:0065007 GO:0065008 GO:0070676 GO:0070727 GO:0071704 GO:0071840 GO:0071985 GO:0090558 GO:0090626 GO:0097159 GO:0097367 GO:0097708 GO:0098588 GO:0098771 GO:0098796 GO:0098805 GO:1901265 GO:1901360 GO:1901363 GO:1901615 GO:1902494 GO:1904949 GO:1990621
KEGG Pathways
Metabolic & Signaling
ko04144 ko04217 map04144 map04217
Pfam Domains
Protein Families
AAA MIT Vps4_C

Protein Analysis

92

Amino Acids

10.17

Weight (kDa)

7.64

Isoelectric Point (pI)

54.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 62
AcuI CTGAAG 1 cut(s) 98
AgsI TTSAA 1 cut(s) 257
AhlI ACTAGT 1 cut(s) 71
AluBI AGCT 4 cut(s) 88, 168, 182, 204
AluI AGCT 4 cut(s) 88, 168, 182, 204
Alw26I GTCTC 1 cut(s) 229
AoxI GGCC 1 cut(s) 42
ApeKI GCWGC 1 cut(s) 59
AspS9I GGNCC 2 cut(s) 32, 215
AsuC2I CCSGG 2 cut(s) 41, 97
AsuHPI GGTGA 1 cut(s) 65
AvaII GGWCC 2 cut(s) 32, 215
BanII GRGCYC 1 cut(s) 97
BarI GAAGNNNNNNTAC 2 cut(s) 237, 269
BbsI GAAGAC 1 cut(s) 86
BbvI GCAGC 1 cut(s) 46
BcnI CCSGG 2 cut(s) 41, 97
BcoDI GTCTC 1 cut(s) 229
BcuI ACTAGT 1 cut(s) 71
BfaI CTAG 2 cut(s) 72, 209
BisI GCNGC 1 cut(s) 60
BlsI GCNGC 1 cut(s) 61
Bme1390I CCNGG 2 cut(s) 41, 97
Bme18I GGWCC 2 cut(s) 32, 215
BmgT120I GGNCC 2 cut(s) 32, 215
BmiI GGNNCC 3 cut(s) 34, 216, 217
BmrFI CCNGG 2 cut(s) 41, 97
BmsI GCATC 1 cut(s) 46
BoxI GACNNNNGTC 1 cut(s) 30
BpiI GAAGAC 1 cut(s) 86
BpuEI CTTGAG 1 cut(s) 148
BpuMI CCSGG 2 cut(s) 41, 97
BsaBI GATNNNNATC 1 cut(s) 11
Bse118I RCCGGY 1 cut(s) 109
Bse8I GATNNNNATC 1 cut(s) 11
BseGI GGATG 1 cut(s) 28
BseJI GATNNNNATC 1 cut(s) 11
BseMII CTCAG 3 cut(s) 137, 170, 264
BseXI GCAGC 1 cut(s) 46
BseYI CCCAGC 1 cut(s) 35
BshFI GGCC 1 cut(s) 44
BsiSI CCGG 3 cut(s) 41, 97, 110
BslFI GGGAC 2 cut(s) 18, 201
BsmAI GTCTC 1 cut(s) 229
BsmFI GGGAC 2 cut(s) 18, 201
BsnI GGCC 1 cut(s) 44
Bsp1286I GDGCHC 1 cut(s) 97
BspACI CCGC 1 cut(s) 62
BspANI GGCC 1 cut(s) 44
BspCNI CTCAG 3 cut(s) 136, 169, 265
BspLI GGNNCC 3 cut(s) 34, 216, 217
BsrFI RCCGGY 1 cut(s) 109
BssAI RCCGGY 1 cut(s) 109
Bst4CI ACNGT 3 cut(s) 32, 53, 136
BstDEI CTNAG 3 cut(s) 123, 156, 273
BstF5I GGATG 1 cut(s) 28
BstMAI GTCTC 1 cut(s) 229
BstMWI GCNNNNNNNGC 2 cut(s) 106, 201
BstPAI GACNNNNGTC 1 cut(s) 30
BstSCI CCNGG 2 cut(s) 39, 95
BstV1I GCAGC 1 cut(s) 46
BstV2I GAAGAC 1 cut(s) 86
BsuRI GGCC 1 cut(s) 44
BtsCI GGATG 1 cut(s) 28
Cfr10I RCCGGY 1 cut(s) 109
Cfr13I GGNCC 2 cut(s) 32, 215
CviAII CATG 1 cut(s) 141
CviJI RGCY 9 cut(s) 39, 44, 88, 95, 100, 160, 168, 182, 204
CviKI_1 RGCY 9 cut(s) 39, 44, 88, 95, 100, 160, 168, 182, 204
DdeI CTNAG 3 cut(s) 123, 156, 273
Eco24I GRGCYC 1 cut(s) 97
Eco47I GGWCC 2 cut(s) 32, 215
Eco57I CTGAAG 1 cut(s) 98
EcoO109I RGGNCCY 1 cut(s) 215
EcoT38I GRGCYC 1 cut(s) 97
FaeI CATG 1 cut(s) 144
FaiI YATR 3 cut(s) 142, 200, 239
FaqI GGGAC 2 cut(s) 18, 201
FatI CATG 1 cut(s) 140
Fnu4HI GCNGC 1 cut(s) 60
FokI GGATG 1 cut(s) 35
FriOI GRGCYC 1 cut(s) 97
Fsp4HI GCNGC 1 cut(s) 60
FspBI CTAG 2 cut(s) 72, 209
GluI GCNGC 1 cut(s) 60
GsaI CCCAGC 1 cut(s) 39
HaeIII GGCC 1 cut(s) 44
HapII CCGG 3 cut(s) 41, 97, 110
Hin1II CATG 1 cut(s) 144
HindIII AAGCTT 2 cut(s) 166, 180
HinfI GANTC 1 cut(s) 7
HpaII CCGG 3 cut(s) 41, 97, 110
HphI GGTGA 1 cut(s) 65
Hpy188I TCNGA 3 cut(s) 78, 92, 274
Hpy99I CGWCG 1 cut(s) 32
HpyCH4III ACNGT 3 cut(s) 32, 53, 136
HpyCH4V TGCA 2 cut(s) 195, 231
HpyF10VI GCNNNNNNNGC 2 cut(s) 106, 201
HpyF3I CTNAG 3 cut(s) 123, 156, 273
Hsp92II CATG 1 cut(s) 144
KflI GGGWCCC 1 cut(s) 215
LmnI GCTCC 1 cut(s) 93
LpnPI CCDG 4 cut(s) 49, 54, 110, 123
Lsp1109I GCAGC 1 cut(s) 46
LweI GCATC 1 cut(s) 46
MaeI CTAG 2 cut(s) 72, 209
MaeIII GTNAC 2 cut(s) 67, 143
MboII GAAGA 2 cut(s) 91, 245
MhlI GDGCHC 1 cut(s) 97
MluCI AATT 2 cut(s) 103, 258
MnlI CCTC 3 cut(s) 55, 132, 172
MseI TTAA 2 cut(s) 102, 185
MspI CCGG 3 cut(s) 41, 97, 110
MspR9I CCNGG 2 cut(s) 41, 97
MwoI GCNNNNNNNGC 2 cut(s) 106, 201
NciI CCSGG 2 cut(s) 41, 97
NlaIII CATG 1 cut(s) 144
NlaIV GGNNCC 3 cut(s) 34, 216, 217
PfeI GAWTC 1 cut(s) 7
PkrI GCNGC 1 cut(s) 61
PpuMI RGGWCCY 1 cut(s) 215
PshAI GACNNNNGTC 1 cut(s) 30
Psp5II RGGWCCY 1 cut(s) 215
PspFI CCCAGC 1 cut(s) 35
PspN4I GGNNCC 3 cut(s) 34, 216, 217
PspPI GGNCC 2 cut(s) 32, 215
PspPPI RGGWCCY 1 cut(s) 215
SaqAI TTAA 2 cut(s) 102, 185
SatI GCNGC 1 cut(s) 60
Sau96I GGNCC 2 cut(s) 32, 215
ScrFI CCNGG 2 cut(s) 41, 97
SduI GDGCHC 1 cut(s) 97
SetI ASST 4 cut(s) 90, 170, 184, 206
SfaNI GCATC 1 cut(s) 46
SinI GGWCC 2 cut(s) 32, 215
SmlI CTYRAG 1 cut(s) 163
SmoI CTYRAG 1 cut(s) 163
SpeI ACTAGT 1 cut(s) 71
Sse9I AATT 2 cut(s) 103, 258
SsiI CCGC 1 cut(s) 62
SspMI CTAG 2 cut(s) 72, 209
StyD4I CCNGG 2 cut(s) 39, 95
TaaI ACNGT 3 cut(s) 32, 53, 136
TasI AATT 2 cut(s) 103, 258
TfiI GAWTC 1 cut(s) 7
Tru1I TTAA 2 cut(s) 102, 185
Tru9I TTAA 2 cut(s) 102, 185
TseI GCWGC 1 cut(s) 59
TspDTI ATGAA 1 cut(s) 255
VpaK11BI GGWCC 2 cut(s) 32, 215
XspI CTAG 2 cut(s) 72, 209
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.