Rh5CG330700

Belongs to the AAA ATPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0002427
Physical Location & Seq
Reverse (-)
37111266 .. 37118065
6800 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG330700.1

Sequence Viewer

Length: 711 bp
ATGGCAATTATTTTGTCCTTTTCCTGGCAATTCTGGGTTCTAATCTGTAACATTCTTTTATCTTTGGCTAGTATTTCCTCTTCAGACCTGGTTTCAAAGTGGATGGGTGAGAGTGAGAAGCTAGTTTCAAACCTTTTCCAAATGGCTCGAGATAGTGCCCCATCCATCATCTTCGTTGATGAAATAGATTCCTTATGTGGGACGCGTGGAGAAGGCAATGAGAGTGAAGCTTCTAGACGAATCAAGACAGAACTTCTTGTGCAGATGCAGGGTGTGGGAACCAATGACCAAAAAGTTCTTGTTCTTGCAGCGACAAATACTCCCTATGCATTAGACCAGGCCATTCGAAGACGTTTTGACAAGCGTATTTACATTCCCCTTCCAGATGCAAAGGCTCGACAGCATATATTCAAAGTCCACTTGGGAGATACTCCTCACAACTTGACAGAAAGTGATTTTGAAAGCTTAGGTTTGAAAACTGAGGGATTTTCGGGTTCAGATATTTCTGTTTGTGTCAAGGATGTTCTTTTTGAACCTGTACGCAAAACACAAGATGCCATGTTCTTTTTCAAGAATTCTGATAATATGTTCATACCTTGTGGACCAAAGCAACCGGGTGCTGTCCAAATCACCATGCAGGAGTTGGCAGCTCAAGGACTAGCTTCACAGGTATGTATTGTTTTTGATTCAGATGGATGTTGCTGTTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0000902 GO:0000904 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005768 GO:0005770 GO:0005771 GO:0005911 GO:0006629 GO:0006810 GO:0006900 GO:0006914 GO:0006996 GO:0007032 GO:0007033 GO:0007034 GO:0008104 GO:0008144 GO:0008150 GO:0008152 GO:0008202 GO:0009056 GO:0009506 GO:0009653 GO:0009888 GO:0009987 GO:0010008 GO:0010026 GO:0010090 GO:0010091 GO:0010256 GO:0012505 GO:0016020 GO:0016043 GO:0016050 GO:0016125 GO:0016192 GO:0016197 GO:0016236 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0022607 GO:0030054 GO:0030154 GO:0030554 GO:0031090 GO:0031410 GO:0031982 GO:0032502 GO:0032507 GO:0032509 GO:0032511 GO:0032553 GO:0032555 GO:0032559 GO:0032989 GO:0032991 GO:0033036 GO:0033365 GO:0034067 GO:0034613 GO:0035639 GO:0036094 GO:0036452 GO:0042592 GO:0042802 GO:0042803 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045053 GO:0045185 GO:0045324 GO:0046907 GO:0046983 GO:0048468 GO:0048856 GO:0048869 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0051235 GO:0051259 GO:0051260 GO:0051641 GO:0051649 GO:0051651 GO:0055044 GO:0055065 GO:0055067 GO:0055075 GO:0055078 GO:0055080 GO:0061024 GO:0061919 GO:0065003 GO:0065007 GO:0065008 GO:0070676 GO:0070727 GO:0071704 GO:0071840 GO:0071985 GO:0090558 GO:0090626 GO:0097159 GO:0097367 GO:0097708 GO:0098588 GO:0098771 GO:0098796 GO:0098805 GO:1901265 GO:1901360 GO:1901363 GO:1901615 GO:1902494 GO:1904949 GO:1990621
KEGG Pathways
Metabolic & Signaling
ko04144 ko04217 map04144 map04217
Pfam Domains
Protein Families
AAA MIT Vps4_C

Protein Analysis

236

Amino Acids

26.2

Weight (kDa)

5.12

Isoelectric Point (pI)

39.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA PF00004 20 - 127 1.9e-29 ATPase family associated with various cellular activities (AAA)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 205
AcsI RAATTY 1 cut(s) 574
AcuI CTGAAG 1 cut(s) 66
AfaI GTAC 1 cut(s) 540
AfiI CCNNNNNNNGG 2 cut(s) 24, 198
AflIII ACRYGT 1 cut(s) 203
AgsI TTSAA 7 cut(s) 96, 129, 412, 461, 475, 533, 571
AjnI CCWGG 3 cut(s) 23, 87, 336
AluBI AGCT 5 cut(s) 121, 230, 465, 650, 662
AluI AGCT 5 cut(s) 121, 230, 465, 650, 662
Ama87I CYCGRG 1 cut(s) 147
AoxI GGCC 1 cut(s) 339
ApeKI GCWGC 2 cut(s) 308, 647
ApoI RAATTY 1 cut(s) 574
AspS9I GGNCC 1 cut(s) 602
AsuC2I CCSGG 1 cut(s) 615
AsuHPI GGTGA 2 cut(s) 119, 622
AsuII TTCGAA 1 cut(s) 346
AvaI CYCGRG 1 cut(s) 147
AvaII GGWCC 1 cut(s) 602
BaeGI GKGCMC 1 cut(s) 160
BarI GAAGNNNNNNTAC 2 cut(s) 64, 96
BbsI GAAGAC 1 cut(s) 355
BbvI GCAGC 2 cut(s) 320, 659
BccI CCATC 4 cut(s) 97, 169, 173, 686
BciT130I CCWGG 3 cut(s) 25, 89, 338
BcnI CCSGG 1 cut(s) 615
BfaI CTAG 4 cut(s) 69, 122, 234, 659
BisI GCNGC 2 cut(s) 309, 648
BlsI GCNGC 2 cut(s) 310, 649
Bme1390I CCNGG 4 cut(s) 25, 89, 338, 615
Bme18I GGWCC 1 cut(s) 602
BmeT110I CYCGRG 1 cut(s) 147
BmgT120I GGNCC 1 cut(s) 602
BmiI GGNNCC 1 cut(s) 280
BmrFI CCNGG 4 cut(s) 25, 89, 338, 615
BmsI GCATC 3 cut(s) 255, 376, 544
BpiI GAAGAC 1 cut(s) 355
Bpu10I CCTNAGC 1 cut(s) 466
Bpu14I TTCGAA 1 cut(s) 346
BpuEI CTTGAG 1 cut(s) 636
BpuMI CCSGG 1 cut(s) 615
BsaXI ACNNNNNCTCC 2 cut(s) 304, 334
Bsc4I CCNNNNNNNGG 2 cut(s) 24, 198
Bse3DI GCAATG 1 cut(s) 223
BseBI CCWGG 3 cut(s) 25, 89, 338
BseGI GGATG 4 cut(s) 108, 161, 526, 701
BseLI CCNNNNNNNGG 2 cut(s) 24, 198
BseMI GCAATG 1 cut(s) 223
BseMII CTCAG 1 cut(s) 471
BseRI GAGGAG 1 cut(s) 423
BseSI GKGCMC 1 cut(s) 160
BseXI GCAGC 2 cut(s) 320, 659
BsgI GTGCAG 1 cut(s) 281
Bsh1236I CGCG 1 cut(s) 205
BshFI GGCC 1 cut(s) 341
BsiHKCI CYCGRG 1 cut(s) 147
BsiSI CCGG 1 cut(s) 614
BslFI GGGAC 1 cut(s) 214
BslI CCNNNNNNNGG 2 cut(s) 24, 198
BsmFI GGGAC 1 cut(s) 214
BsnI GGCC 1 cut(s) 341
BsoBI CYCGRG 1 cut(s) 147
Bsp119I TTCGAA 1 cut(s) 346
Bsp1286I GDGCHC 1 cut(s) 160
BspANI GGCC 1 cut(s) 341
BspCNI CTCAG 1 cut(s) 472
BspFNI CGCG 1 cut(s) 205
BspLI GGNNCC 1 cut(s) 280
BspT104I TTCGAA 1 cut(s) 346
BsrDI GCAATG 1 cut(s) 223
Bst2UI CCWGG 3 cut(s) 25, 89, 338
Bst6I CTCTTC 1 cut(s) 85
BstBI TTCGAA 1 cut(s) 346
BstDEI CTNAG 2 cut(s) 466, 480
BstF5I GGATG 4 cut(s) 108, 161, 526, 701
BstFNI CGCG 1 cut(s) 205
BstNI CCWGG 3 cut(s) 25, 89, 338
BstSCI CCNGG 4 cut(s) 23, 87, 336, 613
BstSLI GKGCMC 1 cut(s) 160
BstUI CGCG 1 cut(s) 205
BstV1I GCAGC 2 cut(s) 320, 659
BstV2I GAAGAC 1 cut(s) 355
BsuRI GGCC 1 cut(s) 341
BtsCI GGATG 4 cut(s) 108, 161, 526, 701
Cfr13I GGNCC 1 cut(s) 602
CseI GACGC 1 cut(s) 211
CsiI ACCWGGT 1 cut(s) 87
Csp6I GTAC 1 cut(s) 539
CviAII CATG 2 cut(s) 559, 634
CviJI RGCY 9 cut(s) 68, 121, 146, 230, 341, 395, 465, 650, 662
CviKI_1 RGCY 9 cut(s) 68, 121, 146, 230, 341, 395, 465, 650, 662
CviQI GTAC 1 cut(s) 539
DdeI CTNAG 2 cut(s) 466, 480
Eam1104I CTCTTC 1 cut(s) 85
EarI CTCTTC 1 cut(s) 85
Eco47I GGWCC 1 cut(s) 602
Eco57I CTGAAG 1 cut(s) 66
Eco88I CYCGRG 1 cut(s) 147
EcoRI GAATTC 1 cut(s) 574
EcoRII CCWGG 3 cut(s) 23, 87, 336
EcoT22I ATGCAT 1 cut(s) 331
FaeI CATG 2 cut(s) 562, 637
FaiI YATR 9 cut(s) 196, 327, 405, 407, 560, 587, 593, 635, 673
FaqI GGGAC 1 cut(s) 214
FatI CATG 2 cut(s) 558, 633
Fnu4HI GCNGC 2 cut(s) 309, 648
FokI GGATG 3 cut(s) 115, 148, 533
Fsp4HI GCNGC 2 cut(s) 309, 648
FspBI CTAG 4 cut(s) 69, 122, 234, 659
GluI GCNGC 2 cut(s) 309, 648
HaeIII GGCC 1 cut(s) 341
HapII CCGG 1 cut(s) 614
HgaI GACGC 1 cut(s) 211
Hin1II CATG 2 cut(s) 562, 637
HindIII AAGCTT 2 cut(s) 228, 463
HinfI GANTC 3 cut(s) 188, 240, 686
HpaII CCGG 1 cut(s) 614
HphI GGTGA 2 cut(s) 119, 622
Hpy166II GTNNAC 2 cut(s) 418, 602
Hpy188I TCNGA 4 cut(s) 85, 499, 580, 691
Hpy188III TCNNGA 5 cut(s) 149, 234, 244, 383, 571
Hpy8I GTNNAC 2 cut(s) 418, 602
HpyAV CCTTC 2 cut(s) 206, 389
HpyCH4IV ACGT 1 cut(s) 352
HpyCH4V TGCA 6 cut(s) 262, 268, 308, 329, 389, 637
HpyF3I CTNAG 2 cut(s) 466, 480
HpySE526I ACGT 1 cut(s) 352
Hsp92II CATG 2 cut(s) 562, 637
Lsp1109I GCAGC 2 cut(s) 320, 659
LweI GCATC 3 cut(s) 255, 376, 544
MabI ACCWGGT 1 cut(s) 87
MaeI CTAG 4 cut(s) 69, 122, 234, 659
MaeII ACGT 1 cut(s) 352
MaeIII GTNAC 1 cut(s) 47
MboII GAAGA 3 cut(s) 72, 163, 360
MhlI GDGCHC 1 cut(s) 160
MluCI AATT 3 cut(s) 6, 29, 574
MluI ACGCGT 1 cut(s) 203
MnlI CCTC 3 cut(s) 88, 444, 475
Mph1103I ATGCAT 1 cut(s) 331
MslI CAYNNNNRTG 1 cut(s) 670
MspI CCGG 1 cut(s) 614
MspR9I CCNGG 4 cut(s) 25, 89, 338, 615
MvaI CCWGG 3 cut(s) 25, 89, 338
MvnI CGCG 1 cut(s) 205
NciI CCSGG 1 cut(s) 615
NlaIII CATG 2 cut(s) 562, 637
NlaIV GGNNCC 1 cut(s) 280
NsiI ATGCAT 1 cut(s) 331
NspV TTCGAA 1 cut(s) 346
PaeR7I CTCGAG 1 cut(s) 147
PfeI GAWTC 3 cut(s) 188, 240, 686
PkrI GCNGC 2 cut(s) 310, 649
Psp6I CCWGG 3 cut(s) 23, 87, 336
PspGI CCWGG 3 cut(s) 23, 87, 336
PspN4I GGNNCC 1 cut(s) 280
PspPI GGNCC 1 cut(s) 602
RsaI GTAC 1 cut(s) 540
RsaNI GTAC 1 cut(s) 539
RseI CAYNNNNRTG 1 cut(s) 670
SatI GCNGC 2 cut(s) 309, 648
Sau96I GGNCC 1 cut(s) 602
ScrFI CCNGG 4 cut(s) 25, 89, 338, 615
SduI GDGCHC 1 cut(s) 160
SexAI ACCWGGT 1 cut(s) 87
SfaNI GCATC 3 cut(s) 255, 376, 544
Sfr274I CTCGAG 1 cut(s) 147
SfuI TTCGAA 1 cut(s) 346
SinI GGWCC 1 cut(s) 602
SlaI CTCGAG 1 cut(s) 147
SmiMI CAYNNNNRTG 1 cut(s) 670
SmlI CTYRAG 2 cut(s) 147, 651
SmoI CTYRAG 2 cut(s) 147, 651
Sse9I AATT 3 cut(s) 6, 29, 574
SspMI CTAG 4 cut(s) 69, 122, 234, 659
StyD4I CCNGG 4 cut(s) 23, 87, 336, 613
TaiI ACGT 1 cut(s) 355
TaqI TCGA 3 cut(s) 148, 346, 397
TasI AATT 3 cut(s) 6, 29, 574
TfiI GAWTC 3 cut(s) 188, 240, 686
TseI GCWGC 2 cut(s) 308, 647
TspDTI ATGAA 2 cut(s) 195, 580
VpaK11BI GGWCC 1 cut(s) 602
XapI RAATTY 1 cut(s) 574
XbaI TCTAGA 1 cut(s) 233
XcmI CCANNNNNNNNNTGG 1 cut(s) 640
XhoI CTCGAG 1 cut(s) 147
XspI CTAG 4 cut(s) 69, 122, 234, 659
Zsp2I ATGCAT 1 cut(s) 331
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.