Rmu_sc0001857.1_g000012

Belongs to the AAA ATPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001857.1
OG0002427
Physical Location & Seq
Forward (+)
55032 .. 55232
201 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001857.1_g000012.1.cds

Sequence Viewer

Length: 201 bp
atgtatagcaatttcaagaaggctattacccagatattcaccgagtacttgcgccgggctatggagattcgtatcgttttggatgacgacgggcccgacccggcctccaacggggatgcggcggtggttaccagtctgaagaccaagcccaaggacggcgaaggcgactatggggaggatccggagcagaccaagctctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0000902 GO:0000904 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005768 GO:0005770 GO:0005771 GO:0005911 GO:0006629 GO:0006810 GO:0006900 GO:0006914 GO:0006996 GO:0007032 GO:0007033 GO:0007034 GO:0008104 GO:0008144 GO:0008150 GO:0008152 GO:0008202 GO:0009056 GO:0009506 GO:0009653 GO:0009888 GO:0009987 GO:0010008 GO:0010026 GO:0010090 GO:0010091 GO:0010256 GO:0012505 GO:0016020 GO:0016043 GO:0016050 GO:0016125 GO:0016192 GO:0016197 GO:0016236 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0022607 GO:0030054 GO:0030154 GO:0030554 GO:0031090 GO:0031410 GO:0031982 GO:0032502 GO:0032507 GO:0032509 GO:0032511 GO:0032553 GO:0032555 GO:0032559 GO:0032989 GO:0032991 GO:0033036 GO:0033365 GO:0034067 GO:0034613 GO:0035639 GO:0036094 GO:0036452 GO:0042592 GO:0042802 GO:0042803 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045053 GO:0045185 GO:0045324 GO:0046907 GO:0046983 GO:0048468 GO:0048856 GO:0048869 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0051235 GO:0051259 GO:0051260 GO:0051641 GO:0051649 GO:0051651 GO:0055044 GO:0055065 GO:0055067 GO:0055075 GO:0055078 GO:0055080 GO:0061024 GO:0061919 GO:0065003 GO:0065007 GO:0065008 GO:0070676 GO:0070727 GO:0071704 GO:0071840 GO:0071985 GO:0090558 GO:0090626 GO:0097159 GO:0097367 GO:0097708 GO:0098588 GO:0098771 GO:0098796 GO:0098805 GO:1901265 GO:1901360 GO:1901363 GO:1901615 GO:1902494 GO:1904949 GO:1990621
KEGG Pathways
Metabolic & Signaling
ko04144 ko04217 map04144 map04217
Pfam Domains
Protein Families
AAA MIT Vps4_C

Protein Analysis

66

Amino Acids

7.35

Weight (kDa)

4.59

Isoelectric Point (pI)

23.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 181
AciI CCGC 2 cut(s) 119, 122
AclWI GGATC 2 cut(s) 173, 186
AcuI CTGAAG 1 cut(s) 158
AfaI GTAC 1 cut(s) 47
AfiI CCNNNNNNNGG 3 cut(s) 61, 111, 155
AgsI TTSAA 1 cut(s) 16
AluBI AGCT 1 cut(s) 196
AluI AGCT 1 cut(s) 196
AlwI GGATC 2 cut(s) 173, 186
Aor13HI TCCGGA 1 cut(s) 181
AoxI GGCC 2 cut(s) 92, 102
ApaI GGGCCC 1 cut(s) 96
AspLEI GCGC 1 cut(s) 54
AspS9I GGNCC 2 cut(s) 92, 93
AsuC2I CCSGG 2 cut(s) 56, 101
AsuHPI GGTGA 1 cut(s) 31
BaeGI GKGCMC 1 cut(s) 96
BamHI GGATCC 1 cut(s) 178
BanII GRGCYC 1 cut(s) 96
BbsI GAAGAC 1 cut(s) 146
BceAI ACGGC 1 cut(s) 172
BcnI CCSGG 2 cut(s) 56, 101
BisI GCNGC 1 cut(s) 120
BlsI GCNGC 1 cut(s) 121
BmcAI AGTACT 1 cut(s) 47
Bme1390I CCNGG 2 cut(s) 56, 101
BmgT120I GGNCC 2 cut(s) 92, 93
BmiI GGNNCC 2 cut(s) 94, 180
BmrFI CCNGG 2 cut(s) 56, 101
BmsI GCATC 1 cut(s) 106
BpiI GAAGAC 1 cut(s) 146
BpuMI CCSGG 2 cut(s) 56, 101
BsaBI GATNNNNATC 1 cut(s) 71
BsaJI CCNNGG 1 cut(s) 150
BsaWI WCCGGW 1 cut(s) 181
BsaXI ACNNNNNCTCC 2 cut(s) 89, 119
Bsc4I CCNNNNNNNGG 3 cut(s) 61, 111, 155
Bse1I ACTGG 1 cut(s) 132
Bse8I GATNNNNATC 1 cut(s) 71
BseAI TCCGGA 1 cut(s) 181
BseDI CCNNGG 1 cut(s) 150
BseGI GGATG 2 cut(s) 88, 121
BseJI GATNNNNATC 1 cut(s) 71
BseLI CCNNNNNNNGG 3 cut(s) 61, 111, 155
BseNI ACTGG 1 cut(s) 132
BseSI GKGCMC 1 cut(s) 96
BshFI GGCC 2 cut(s) 94, 104
BsiSI CCGG 3 cut(s) 55, 101, 182
BslI CCNNNNNNNGG 3 cut(s) 61, 111, 155
BsnI GGCC 2 cut(s) 94, 104
Bsp120I GGGCCC 1 cut(s) 92
Bsp1286I GDGCHC 1 cut(s) 96
Bsp13I TCCGGA 1 cut(s) 181
Bsp143I GATC 1 cut(s) 178
BspACI CCGC 2 cut(s) 119, 122
BspANI GGCC 2 cut(s) 94, 104
BspEI TCCGGA 1 cut(s) 181
BspLI GGNNCC 2 cut(s) 94, 180
BspPI GGATC 2 cut(s) 173, 186
BsrI ACTGG 1 cut(s) 132
BssECI CCNNGG 1 cut(s) 150
BssMI GATC 1 cut(s) 178
BssT1I CCWWGG 1 cut(s) 150
BstEII GGTNACC 1 cut(s) 127
BstF5I GGATG 2 cut(s) 88, 121
BstHHI GCGC 1 cut(s) 54
BstKTI GATC 1 cut(s) 181
BstMBI GATC 1 cut(s) 178
BstMWI GCNNNNNNNGC 1 cut(s) 193
BstPI GGTNACC 1 cut(s) 127
BstSCI CCNGG 2 cut(s) 54, 99
BstSLI GKGCMC 1 cut(s) 96
BstV2I GAAGAC 1 cut(s) 146
BstX2I RGATCY 1 cut(s) 178
BstYI RGATCY 1 cut(s) 178
BsuRI GGCC 2 cut(s) 94, 104
BtsCI GGATG 2 cut(s) 88, 121
CfoI GCGC 1 cut(s) 54
Cfr13I GGNCC 2 cut(s) 92, 93
Csp6I GTAC 1 cut(s) 46
CviJI RGCY 6 cut(s) 23, 59, 94, 104, 148, 196
CviKI_1 RGCY 6 cut(s) 23, 59, 94, 104, 148, 196
CviQI GTAC 1 cut(s) 46
DpnI GATC 1 cut(s) 180
DpnII GATC 1 cut(s) 178
Eco130I CCWWGG 1 cut(s) 150
Eco24I GRGCYC 1 cut(s) 96
Eco57I CTGAAG 1 cut(s) 158
Eco91I GGTNACC 1 cut(s) 127
EcoO65I GGTNACC 1 cut(s) 127
EcoT14I CCWWGG 1 cut(s) 150
EcoT38I GRGCYC 1 cut(s) 96
ErhI CCWWGG 1 cut(s) 150
FaiI YATR 3 cut(s) 6, 62, 171
Fnu4HI GCNGC 1 cut(s) 120
FokI GGATG 2 cut(s) 95, 128
FriOI GRGCYC 1 cut(s) 96
Fsp4HI GCNGC 1 cut(s) 120
GlaI GCGC 1 cut(s) 53
GluI GCNGC 1 cut(s) 120
HaeIII GGCC 2 cut(s) 94, 104
HapII CCGG 3 cut(s) 55, 101, 182
HhaI GCGC 1 cut(s) 54
Hin6I GCGC 1 cut(s) 52
HinP1I GCGC 1 cut(s) 52
HinfI GANTC 1 cut(s) 67
HpaII CCGG 3 cut(s) 55, 101, 182
HphI GGTGA 1 cut(s) 31
Hpy188I TCNGA 2 cut(s) 138, 200
Hpy188III TCNNGA 2 cut(s) 16, 182
Hpy99I CGWCG 1 cut(s) 92
HpyAV CCTTC 2 cut(s) 13, 155
HpyF10VI GCNNNNNNNGC 1 cut(s) 193
HspAI GCGC 1 cut(s) 52
Kpn2I TCCGGA 1 cut(s) 181
Kzo9I GATC 1 cut(s) 178
LmnI GCTCC 1 cut(s) 184
LpnPI CCDG 5 cut(s) 44, 68, 114, 145, 195
LweI GCATC 1 cut(s) 106
MaeIII GTNAC 1 cut(s) 127
MalI GATC 1 cut(s) 180
MboI GATC 1 cut(s) 178
MboII GAAGA 1 cut(s) 151
MflI RGATCY 1 cut(s) 178
MhlI GDGCHC 1 cut(s) 96
MluCI AATT 1 cut(s) 10
MmeI TCCRAC 1 cut(s) 132
MnlI CCTC 2 cut(s) 115, 169
MroI TCCGGA 1 cut(s) 181
MspI CCGG 3 cut(s) 55, 101, 182
MspR9I CCNGG 2 cut(s) 56, 101
MwoI GCNNNNNNNGC 1 cut(s) 193
NciI CCSGG 2 cut(s) 56, 101
NdeII GATC 1 cut(s) 178
NlaIV GGNNCC 2 cut(s) 94, 180
PcsI WCGNNNNNNNCGW 2 cut(s) 93, 162
PfeI GAWTC 1 cut(s) 67
PkrI GCNGC 1 cut(s) 121
PspEI GGTNACC 1 cut(s) 127
PspN4I GGNNCC 2 cut(s) 94, 180
PspOMI GGGCCC 1 cut(s) 92
PspPI GGNCC 2 cut(s) 92, 93
PsuI RGATCY 1 cut(s) 178
RsaI GTAC 1 cut(s) 47
RsaNI GTAC 1 cut(s) 46
SatI GCNGC 1 cut(s) 120
Sau3AI GATC 1 cut(s) 178
Sau96I GGNCC 2 cut(s) 92, 93
ScaI AGTACT 1 cut(s) 47
ScrFI CCNGG 2 cut(s) 56, 101
SduI GDGCHC 1 cut(s) 96
SetI ASST 1 cut(s) 198
SfaNI GCATC 1 cut(s) 106
Sse9I AATT 1 cut(s) 10
SsiI CCGC 2 cut(s) 119, 122
StyD4I CCNGG 2 cut(s) 54, 99
StyI CCWWGG 1 cut(s) 150
TasI AATT 1 cut(s) 10
TatI WGTACW 1 cut(s) 45
TauI GCSGC 1 cut(s) 122
TfiI GAWTC 1 cut(s) 67
ZrmI AGTACT 1 cut(s) 47
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.