Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002427

Physical Location & Seq

Genomic Coordinates Forward (+)

13200291 .. 13201334

Gene Structure 1044 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ47625

Sequence Viewer

CDS Protein Promoter (2k)

Length: 144 bp

ATGGAGATTCGTATCATTTTGGATGACGACGGTCCCAGCCCGGCCTCTAACGGTGATGCTGCGGTGGTTACTAGTCTGAAGACCAAGCTCCGAGCCCGGCTTAATTTGCCGGTCAAGTTCCCTCAGTTCTTTACTGAGTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000902 GO:0000904 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005768 GO:0005770 GO:0005771 GO:0005911 GO:0006629 GO:0006810 GO:0006900 GO:0006914 GO:0006996 GO:0007032 GO:0007033 GO:0007034 GO:0008104 GO:0008144 GO:0008150 GO:0008152 GO:0008202 GO:0009056 GO:0009506 GO:0009653 GO:0009888 GO:0009987 GO:0010008 GO:0010026 GO:0010090 GO:0010091 GO:0010256 GO:0012505 GO:0016020 GO:0016043 GO:0016050 GO:0016125 GO:0016192 GO:0016197 GO:0016236 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0022607 GO:0030054 GO:0030154 GO:0030554 GO:0031090 GO:0031410 GO:0031982 GO:0032502 GO:0032507 GO:0032509 GO:0032511 GO:0032553 GO:0032555 GO:0032559 GO:0032989 GO:0032991 GO:0033036 GO:0033365 GO:0034067 GO:0034613 GO:0035639 GO:0036094 GO:0036452 GO:0042592 GO:0042802 GO:0042803 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045053 GO:0045185 GO:0045324 GO:0046907 GO:0046983 GO:0048468 GO:0048856 GO:0048869 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0051235 GO:0051259 GO:0051260 GO:0051641 GO:0051649 GO:0051651 GO:0055044 GO:0055065 GO:0055067 GO:0055075 GO:0055078 GO:0055080 GO:0061024 GO:0061919 GO:0065003 GO:0065007 GO:0065008 GO:0070676 GO:0070727 GO:0071704 GO:0071840 GO:0071985 GO:0090558 GO:0090626 GO:0097159 GO:0097367 GO:0097708 GO:0098588 GO:0098771 GO:0098796 GO:0098805 GO:1901265 GO:1901360 GO:1901363 GO:1901615 GO:1902494 GO:1904949 GO:1990621

KEGG Pathways

Metabolic & Signaling

ko04144 ko04217 map04144 map04217

Pfam Domains

Protein Families

AAA MIT Vps4_C

Protein Analysis

47

Amino Acids

5.18

Weight (kDa)

6.02

Isoelectric Point (pI)

58.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002427)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08270 AT1G08270 AT2G27600
fragaria_vesca	FvH4_3g24610 FvH4_3g24610 FvH4_3g24610 FvH4_3g24610
malus_domestica	MD03G1141900.v1.1 MD11G1161300.v1.1
prunus_persica	Prupe.6G127200_v2.0.a1
pyrus_communis	pycom03g09670 pycom11g13390
rosa_chinensis	RchiOBHm_Chr2g0101721 RchiOBHm_Chr5g0044161 RchiOBHm_Chr6g0255971 RchiOBHm_Chr6g0260081 RchiOBHm_Chr7g0184771
rosa_laevigata	RLG00000009143 RLG00000014364 RLG00000021343 RLG00000035169 RLG00000036978
rosa_multiflora	Rmu_sc0000363.1_g000012 Rmu_sc0001648.1_g000029 Rmu_sc0001857.1_g000012 Rmu_sc0004300.1_g000002 Rmu_sc0009830.1_g000003
rosa_roxburghii	Rroxscaffold_2G00091250 Rroxscaffold_3G00264580 Rroxscaffold_7G00197410
rosa_rugosa	Rorug03G0333400
rosa_samantha	Rh2BG234400 Rh2CG154700 Rh5AG295900 Rh5BG309400 Rh5CG292800 Rh5CG330700 Rh6AG305600 Rh7BG180900
rosa_wichuraiana	Rw5G027360 Rw5G027430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	62
AcuI	CTGAAG	1 cut(s)	98
AhlI	ACTAGT	1 cut(s)	71
AluBI	AGCT	1 cut(s)	88
AluI	AGCT	1 cut(s)	88
AoxI	GGCC	1 cut(s)	42
ApeKI	GCWGC	1 cut(s)	59
AspS9I	GGNCC	1 cut(s)	32
AsuC2I	CCSGG	2 cut(s)	41, 97
AsuHPI	GGTGA	1 cut(s)	65
AvaII	GGWCC	1 cut(s)	32
BanII	GRGCYC	1 cut(s)	97
BbsI	GAAGAC	1 cut(s)	86
BbvI	GCAGC	1 cut(s)	46
BcnI	CCSGG	2 cut(s)	41, 97
BcuI	ACTAGT	1 cut(s)	71
BfaI	CTAG	2 cut(s)	72, 142
BisI	GCNGC	1 cut(s)	60
BlsI	GCNGC	1 cut(s)	61
Bme1390I	CCNGG	2 cut(s)	41, 97
Bme18I	GGWCC	1 cut(s)	32
BmgT120I	GGNCC	1 cut(s)	32
BmiI	GGNNCC	1 cut(s)	34
BmrFI	CCNGG	2 cut(s)	41, 97
BmsI	GCATC	1 cut(s)	46
BoxI	GACNNNNGTC	1 cut(s)	30
BpiI	GAAGAC	1 cut(s)	86
BpuMI	CCSGG	2 cut(s)	41, 97
BsaBI	GATNNNNATC	1 cut(s)	11
Bse118I	RCCGGY	1 cut(s)	109
Bse8I	GATNNNNATC	1 cut(s)	11
BseGI	GGATG	1 cut(s)	28
BseJI	GATNNNNATC	1 cut(s)	11
BseMII	CTCAG	2 cut(s)	126, 137
BseXI	GCAGC	1 cut(s)	46
BseYI	CCCAGC	1 cut(s)	35
BshFI	GGCC	1 cut(s)	44
BsiSI	CCGG	3 cut(s)	41, 97, 110
BslFI	GGGAC	1 cut(s)	18
BsmFI	GGGAC	1 cut(s)	18
BsnI	GGCC	1 cut(s)	44
Bsp1286I	GDGCHC	1 cut(s)	97
BspACI	CCGC	1 cut(s)	62
BspANI	GGCC	1 cut(s)	44
BspCNI	CTCAG	2 cut(s)	127, 136
BspLI	GGNNCC	1 cut(s)	34
BsrFI	RCCGGY	1 cut(s)	109
BssAI	RCCGGY	1 cut(s)	109
Bst4CI	ACNGT	2 cut(s)	32, 53
BstDEI	CTNAG	2 cut(s)	123, 135
BstF5I	GGATG	1 cut(s)	28
BstMWI	GCNNNNNNNGC	1 cut(s)	106
BstPAI	GACNNNNGTC	1 cut(s)	30
BstSCI	CCNGG	2 cut(s)	39, 95
BstV1I	GCAGC	1 cut(s)	46
BstV2I	GAAGAC	1 cut(s)	86
BsuRI	GGCC	1 cut(s)	44
BtsCI	GGATG	1 cut(s)	28
Cfr10I	RCCGGY	1 cut(s)	109
Cfr13I	GGNCC	1 cut(s)	32
CviJI	RGCY	5 cut(s)	39, 44, 88, 95, 100
CviKI_1	RGCY	5 cut(s)	39, 44, 88, 95, 100
DdeI	CTNAG	2 cut(s)	123, 135
Eco24I	GRGCYC	1 cut(s)	97
Eco47I	GGWCC	1 cut(s)	32
Eco57I	CTGAAG	1 cut(s)	98
EcoT38I	GRGCYC	1 cut(s)	97
FaqI	GGGAC	1 cut(s)	18
Fnu4HI	GCNGC	1 cut(s)	60
FokI	GGATG	1 cut(s)	35
FriOI	GRGCYC	1 cut(s)	97
Fsp4HI	GCNGC	1 cut(s)	60
FspBI	CTAG	2 cut(s)	72, 142
GluI	GCNGC	1 cut(s)	60
GsaI	CCCAGC	1 cut(s)	39
HaeIII	GGCC	1 cut(s)	44
HapII	CCGG	3 cut(s)	41, 97, 110
HinfI	GANTC	1 cut(s)	7
HpaII	CCGG	3 cut(s)	41, 97, 110
HphI	GGTGA	1 cut(s)	65
Hpy188I	TCNGA	2 cut(s)	78, 92
Hpy99I	CGWCG	1 cut(s)	32
HpyCH4III	ACNGT	2 cut(s)	32, 53
HpyF10VI	GCNNNNNNNGC	1 cut(s)	106
HpyF3I	CTNAG	2 cut(s)	123, 135
LmnI	GCTCC	1 cut(s)	93
LpnPI	CCDG	4 cut(s)	49, 54, 110, 123
Lsp1109I	GCAGC	1 cut(s)	46
LweI	GCATC	1 cut(s)	46
MaeI	CTAG	2 cut(s)	72, 142
MaeIII	GTNAC	1 cut(s)	67
MboII	GAAGA	1 cut(s)	91
MhlI	GDGCHC	1 cut(s)	97
MluCI	AATT	1 cut(s)	103
MnlI	CCTC	2 cut(s)	55, 132
MseI	TTAA	1 cut(s)	102
MspI	CCGG	3 cut(s)	41, 97, 110
MspR9I	CCNGG	2 cut(s)	41, 97
MwoI	GCNNNNNNNGC	1 cut(s)	106
NciI	CCSGG	2 cut(s)	41, 97
NlaIV	GGNNCC	1 cut(s)	34
PfeI	GAWTC	1 cut(s)	7
PkrI	GCNGC	1 cut(s)	61
PshAI	GACNNNNGTC	1 cut(s)	30
PspFI	CCCAGC	1 cut(s)	35
PspN4I	GGNNCC	1 cut(s)	34
PspPI	GGNCC	1 cut(s)	32
SaqAI	TTAA	1 cut(s)	102
SatI	GCNGC	1 cut(s)	60
Sau96I	GGNCC	1 cut(s)	32
ScrFI	CCNGG	2 cut(s)	41, 97
SduI	GDGCHC	1 cut(s)	97
SetI	ASST	1 cut(s)	90
SfaNI	GCATC	1 cut(s)	46
SinI	GGWCC	1 cut(s)	32
SpeI	ACTAGT	1 cut(s)	71
Sse9I	AATT	1 cut(s)	103
SsiI	CCGC	1 cut(s)	62
SspMI	CTAG	2 cut(s)	72, 142
StyD4I	CCNGG	2 cut(s)	39, 95
TaaI	ACNGT	2 cut(s)	32, 53
TasI	AATT	1 cut(s)	103
TfiI	GAWTC	1 cut(s)	7
Tru1I	TTAA	1 cut(s)	102
Tru9I	TTAA	1 cut(s)	102
TseI	GCWGC	1 cut(s)	59
VpaK11BI	GGWCC	1 cut(s)	32
XspI	CTAG	2 cut(s)	72, 142

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.