Rh2BG234400

Belongs to the AAA ATPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0002427
Physical Location & Seq
Forward (+)
23317467 .. 23325922
8456 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG234400.1

Sequence Viewer

Length: 249 bp
ATGTATAGCAATTTCAAGAAGGTTATTACCCAGATATTCACAGAGTACTTGCGTAGGGCTATGGAGATTCGTATCGTTTTGGATGACGACGGTCCCAGCCCGGCCTCCAACGGCGATGCAGCGGTGGTTACCAGTCTGAAGACCAATCCCGAGGACGGCAAAGGCAGCGACGGGGAGGATCCGGAGCAGACCAAGCTCCGAGCCGGGCTTAATTTGCCGGTCAAGTTCCCTCAGTTCTTTACTGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0000902 GO:0000904 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005768 GO:0005770 GO:0005771 GO:0005911 GO:0006629 GO:0006810 GO:0006900 GO:0006914 GO:0006996 GO:0007032 GO:0007033 GO:0007034 GO:0008104 GO:0008144 GO:0008150 GO:0008152 GO:0008202 GO:0009056 GO:0009506 GO:0009653 GO:0009888 GO:0009987 GO:0010008 GO:0010026 GO:0010090 GO:0010091 GO:0010256 GO:0012505 GO:0016020 GO:0016043 GO:0016050 GO:0016125 GO:0016192 GO:0016197 GO:0016236 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0022607 GO:0030054 GO:0030154 GO:0030554 GO:0031090 GO:0031410 GO:0031982 GO:0032502 GO:0032507 GO:0032509 GO:0032511 GO:0032553 GO:0032555 GO:0032559 GO:0032989 GO:0032991 GO:0033036 GO:0033365 GO:0034067 GO:0034613 GO:0035639 GO:0036094 GO:0036452 GO:0042592 GO:0042802 GO:0042803 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045053 GO:0045185 GO:0045324 GO:0046907 GO:0046983 GO:0048468 GO:0048856 GO:0048869 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0051235 GO:0051259 GO:0051260 GO:0051641 GO:0051649 GO:0051651 GO:0055044 GO:0055065 GO:0055067 GO:0055075 GO:0055078 GO:0055080 GO:0061024 GO:0061919 GO:0065003 GO:0065007 GO:0065008 GO:0070676 GO:0070727 GO:0071704 GO:0071840 GO:0071985 GO:0090558 GO:0090626 GO:0097159 GO:0097367 GO:0097708 GO:0098588 GO:0098771 GO:0098796 GO:0098805 GO:1901265 GO:1901360 GO:1901363 GO:1901615 GO:1902494 GO:1904949 GO:1990621
KEGG Pathways
Metabolic & Signaling
ko04144 ko04217 map04144 map04217
Pfam Domains
Protein Families
AAA MIT Vps4_C

Protein Analysis

82

Amino Acids

9.04

Weight (kDa)

4.95

Isoelectric Point (pI)

40.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 181
AciI CCGC 1 cut(s) 122
AclWI GGATC 2 cut(s) 173, 186
AcuI CTGAAG 1 cut(s) 158
AfaI GTAC 1 cut(s) 47
AfiI CCNNNNNNNGG 1 cut(s) 155
AgsI TTSAA 1 cut(s) 16
AluBI AGCT 1 cut(s) 196
AluI AGCT 1 cut(s) 196
AlwI GGATC 2 cut(s) 173, 186
Ama87I CYCGRG 1 cut(s) 149
Aor13HI TCCGGA 1 cut(s) 181
AoxI GGCC 1 cut(s) 102
ApeKI GCWGC 2 cut(s) 119, 165
AspS9I GGNCC 1 cut(s) 92
AsuC2I CCSGG 2 cut(s) 101, 205
AvaI CYCGRG 1 cut(s) 149
AvaII GGWCC 1 cut(s) 92
BamHI GGATCC 1 cut(s) 178
BbsI GAAGAC 1 cut(s) 146
BbvI GCAGC 2 cut(s) 131, 177
BceAI ACGGC 2 cut(s) 127, 172
BcnI CCSGG 2 cut(s) 101, 205
BisI GCNGC 2 cut(s) 120, 166
BlsI GCNGC 2 cut(s) 121, 167
BmcAI AGTACT 1 cut(s) 47
Bme1390I CCNGG 2 cut(s) 101, 205
Bme18I GGWCC 1 cut(s) 92
BmeT110I CYCGRG 1 cut(s) 149
BmgT120I GGNCC 1 cut(s) 92
BmiI GGNNCC 2 cut(s) 94, 180
BmrFI CCNGG 2 cut(s) 101, 205
BmsI GCATC 1 cut(s) 106
BoxI GACNNNNGTC 1 cut(s) 90
BpiI GAAGAC 1 cut(s) 146
BpuMI CCSGG 2 cut(s) 101, 205
BsaBI GATNNNNATC 1 cut(s) 71
BsaJI CCNNGG 1 cut(s) 150
BsaWI WCCGGW 1 cut(s) 181
Bsc4I CCNNNNNNNGG 1 cut(s) 155
Bse118I RCCGGY 1 cut(s) 217
Bse1I ACTGG 2 cut(s) 132, 247
Bse8I GATNNNNATC 1 cut(s) 71
BseAI TCCGGA 1 cut(s) 181
BseDI CCNNGG 1 cut(s) 150
BseGI GGATG 1 cut(s) 88
BseJI GATNNNNATC 1 cut(s) 71
BseLI CCNNNNNNNGG 1 cut(s) 155
BseMII CTCAG 1 cut(s) 245
BseNI ACTGG 2 cut(s) 132, 247
BseXI GCAGC 2 cut(s) 131, 177
BseYI CCCAGC 1 cut(s) 95
BshFI GGCC 1 cut(s) 104
BsiHKCI CYCGRG 1 cut(s) 149
BsiSI CCGG 4 cut(s) 101, 182, 204, 218
BslFI GGGAC 1 cut(s) 78
BslI CCNNNNNNNGG 1 cut(s) 155
BsmFI GGGAC 1 cut(s) 78
BsnI GGCC 1 cut(s) 104
BsoBI CYCGRG 1 cut(s) 149
Bsp13I TCCGGA 1 cut(s) 181
Bsp143I GATC 1 cut(s) 178
BspACI CCGC 1 cut(s) 122
BspANI GGCC 1 cut(s) 104
BspCNI CTCAG 1 cut(s) 244
BspEI TCCGGA 1 cut(s) 181
BspLI GGNNCC 2 cut(s) 94, 180
BspPI GGATC 2 cut(s) 173, 186
BsrFI RCCGGY 1 cut(s) 217
BsrI ACTGG 2 cut(s) 132, 247
BssAI RCCGGY 1 cut(s) 217
BssECI CCNNGG 1 cut(s) 150
BssMI GATC 1 cut(s) 178
Bst4CI ACNGT 1 cut(s) 92
BstDEI CTNAG 1 cut(s) 231
BstEII GGTNACC 1 cut(s) 127
BstF5I GGATG 1 cut(s) 88
BstKTI GATC 1 cut(s) 181
BstMBI GATC 1 cut(s) 178
BstMWI GCNNNNNNNGC 3 cut(s) 165, 193, 214
BstPAI GACNNNNGTC 1 cut(s) 90
BstPI GGTNACC 1 cut(s) 127
BstSCI CCNGG 2 cut(s) 99, 203
BstV1I GCAGC 2 cut(s) 131, 177
BstV2I GAAGAC 1 cut(s) 146
BstX2I RGATCY 1 cut(s) 178
BstYI RGATCY 1 cut(s) 178
BsuRI GGCC 1 cut(s) 104
BtgZI GCGATG 1 cut(s) 129
BtsCI GGATG 1 cut(s) 88
Cfr10I RCCGGY 1 cut(s) 217
Cfr13I GGNCC 1 cut(s) 92
Csp6I GTAC 1 cut(s) 46
CviJI RGCY 6 cut(s) 59, 99, 104, 196, 203, 208
CviKI_1 RGCY 6 cut(s) 59, 99, 104, 196, 203, 208
CviQI GTAC 1 cut(s) 46
DdeI CTNAG 1 cut(s) 231
DpnI GATC 1 cut(s) 180
DpnII GATC 1 cut(s) 178
Eco47I GGWCC 1 cut(s) 92
Eco57I CTGAAG 1 cut(s) 158
Eco88I CYCGRG 1 cut(s) 149
Eco91I GGTNACC 1 cut(s) 127
EcoO65I GGTNACC 1 cut(s) 127
FaiI YATR 2 cut(s) 6, 62
FaqI GGGAC 1 cut(s) 78
Fnu4HI GCNGC 2 cut(s) 120, 166
FokI GGATG 1 cut(s) 95
Fsp4HI GCNGC 2 cut(s) 120, 166
GluI GCNGC 2 cut(s) 120, 166
GsaI CCCAGC 1 cut(s) 99
HaeIII GGCC 1 cut(s) 104
HapII CCGG 4 cut(s) 101, 182, 204, 218
HinfI GANTC 1 cut(s) 67
HpaII CCGG 4 cut(s) 101, 182, 204, 218
Hpy188I TCNGA 2 cut(s) 138, 200
Hpy188III TCNNGA 3 cut(s) 16, 149, 182
Hpy99I CGWCG 2 cut(s) 92, 173
HpyAV CCTTC 1 cut(s) 13
HpyCH4III ACNGT 1 cut(s) 92
HpyCH4V TGCA 1 cut(s) 119
HpyF10VI GCNNNNNNNGC 3 cut(s) 165, 193, 214
HpyF3I CTNAG 1 cut(s) 231
Kpn2I TCCGGA 1 cut(s) 181
Kzo9I GATC 1 cut(s) 178
LmnI GCTCC 2 cut(s) 184, 201
LpnPI CCDG 8 cut(s) 44, 109, 114, 145, 195, 217, 228, 231
Lsp1109I GCAGC 2 cut(s) 131, 177
LweI GCATC 1 cut(s) 106
MaeIII GTNAC 1 cut(s) 127
MalI GATC 1 cut(s) 180
MboI GATC 1 cut(s) 178
MboII GAAGA 1 cut(s) 151
MflI RGATCY 1 cut(s) 178
MluCI AATT 2 cut(s) 10, 211
MmeI TCCRAC 1 cut(s) 132
MnlI CCTC 4 cut(s) 115, 145, 169, 240
MroI TCCGGA 1 cut(s) 181
MseI TTAA 1 cut(s) 210
MspA1I CMGCKG 1 cut(s) 122
MspI CCGG 4 cut(s) 101, 182, 204, 218
MspR9I CCNGG 2 cut(s) 101, 205
MwoI GCNNNNNNNGC 3 cut(s) 165, 193, 214
NciI CCSGG 2 cut(s) 101, 205
NdeII GATC 1 cut(s) 178
NlaIV GGNNCC 2 cut(s) 94, 180
PfeI GAWTC 1 cut(s) 67
PkrI GCNGC 2 cut(s) 121, 167
PshAI GACNNNNGTC 1 cut(s) 90
PspEI GGTNACC 1 cut(s) 127
PspFI CCCAGC 1 cut(s) 95
PspN4I GGNNCC 2 cut(s) 94, 180
PspPI GGNCC 1 cut(s) 92
PsuI RGATCY 1 cut(s) 178
RsaI GTAC 1 cut(s) 47
RsaNI GTAC 1 cut(s) 46
SaqAI TTAA 1 cut(s) 210
SatI GCNGC 2 cut(s) 120, 166
Sau3AI GATC 1 cut(s) 178
Sau96I GGNCC 1 cut(s) 92
ScaI AGTACT 1 cut(s) 47
ScrFI CCNGG 2 cut(s) 101, 205
SetI ASST 2 cut(s) 24, 198
SfaNI GCATC 1 cut(s) 106
SinI GGWCC 1 cut(s) 92
Sse9I AATT 2 cut(s) 10, 211
SsiI CCGC 1 cut(s) 122
StyD4I CCNGG 2 cut(s) 99, 203
TaaI ACNGT 1 cut(s) 92
TasI AATT 2 cut(s) 10, 211
TatI WGTACW 1 cut(s) 45
TfiI GAWTC 1 cut(s) 67
Tru1I TTAA 1 cut(s) 210
Tru9I TTAA 1 cut(s) 210
TseI GCWGC 2 cut(s) 119, 165
VpaK11BI GGWCC 1 cut(s) 92
ZrmI AGTACT 1 cut(s) 47
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.