Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0002427

Physical Location & Seq

Genomic Coordinates Reverse (-)

62162519 .. 62162925

Gene Structure 407 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000035169

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGCTGGAAACTACGCAAGGCCTTTCCTTTGTACATGAACGCTCTCGAGTACTTCAAGATACTCGAGCCGTTTTGGATGATGGCAGGGCCGGACCGGCCTCTAACGGTGATACGGCGGTGGCTAGTAGGCCGAAAACCAAGCCCAAGGACGGCGAAGGCTATGACGGGGAGGATCCGGAAGAGGCCAAGCTTCGGGACAGGCTTAATTCGGCGATTATTAGGGGAAAACCCAATTTCAAGTGGAATGATGTGGCGGATCTTGAGAGCGGTAACCAGGCCTTGCAAGTGGCACTTGTATTGCCGGTCAAGTTCCTTACTGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000902 GO:0000904 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005768 GO:0005770 GO:0005771 GO:0005911 GO:0006629 GO:0006810 GO:0006900 GO:0006914 GO:0006996 GO:0007032 GO:0007033 GO:0007034 GO:0008104 GO:0008144 GO:0008150 GO:0008152 GO:0008202 GO:0009056 GO:0009506 GO:0009653 GO:0009888 GO:0009987 GO:0010008 GO:0010026 GO:0010090 GO:0010091 GO:0010256 GO:0012505 GO:0016020 GO:0016043 GO:0016050 GO:0016125 GO:0016192 GO:0016197 GO:0016236 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0022607 GO:0030054 GO:0030154 GO:0030554 GO:0031090 GO:0031410 GO:0031982 GO:0032502 GO:0032507 GO:0032509 GO:0032511 GO:0032553 GO:0032555 GO:0032559 GO:0032989 GO:0032991 GO:0033036 GO:0033365 GO:0034067 GO:0034613 GO:0035639 GO:0036094 GO:0036452 GO:0042592 GO:0042802 GO:0042803 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045053 GO:0045185 GO:0045324 GO:0046907 GO:0046983 GO:0048468 GO:0048856 GO:0048869 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0051235 GO:0051259 GO:0051260 GO:0051641 GO:0051649 GO:0051651 GO:0055044 GO:0055065 GO:0055067 GO:0055075 GO:0055078 GO:0055080 GO:0061024 GO:0061919 GO:0065003 GO:0065007 GO:0065008 GO:0070676 GO:0070727 GO:0071704 GO:0071840 GO:0071985 GO:0090558 GO:0090626 GO:0097159 GO:0097367 GO:0097708 GO:0098588 GO:0098771 GO:0098796 GO:0098805 GO:1901265 GO:1901360 GO:1901363 GO:1901615 GO:1902494 GO:1904949 GO:1990621

KEGG Pathways

Metabolic & Signaling

ko04144 ko04217 map04144 map04217

Pfam Domains

Protein Families

AAA MIT Vps4_C

Protein Analysis

108

Amino Acids

11.62

Weight (kDa)

5.37

Isoelectric Point (pI)

27.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002427)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08270 AT1G08270 AT2G27600
fragaria_vesca	FvH4_3g24610 FvH4_3g24610 FvH4_3g24610 FvH4_3g24610
malus_domestica	MD03G1141900.v1.1 MD11G1161300.v1.1
prunus_persica	Prupe.6G127200_v2.0.a1
pyrus_communis	pycom03g09670 pycom11g13390
rosa_chinensis	RchiOBHm_Chr2g0101721 RchiOBHm_Chr5g0044161 RchiOBHm_Chr6g0255971 RchiOBHm_Chr6g0260081 RchiOBHm_Chr7g0184771
rosa_laevigata	RLG00000009143 RLG00000014364 RLG00000021343 RLG00000035169 RLG00000036978
rosa_multiflora	Rmu_sc0000363.1_g000012 Rmu_sc0001648.1_g000029 Rmu_sc0001857.1_g000012 Rmu_sc0004300.1_g000002 Rmu_sc0009830.1_g000003
rosa_roxburghii	Rroxscaffold_2G00091250 Rroxscaffold_3G00264580 Rroxscaffold_7G00197410
rosa_rugosa	Rorug03G0333400
rosa_samantha	Rh2BG234400 Rh2CG154700 Rh5AG295900 Rh5BG309400 Rh5CG292800 Rh5CG330700 Rh6AG305600 Rh7BG180900
rosa_wichuraiana	Rw5G027360 Rw5G027430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	267
AccIII	TCCGGA	1 cut(s)	175
AciI	CCGC	3 cut(s)	116, 254, 267
AclWI	GGATC	3 cut(s)	167, 180, 264
AfaI	GTAC	2 cut(s)	33, 51
AfiI	CCNNNNNNNGG	2 cut(s)	149, 192
AgsI	TTSAA	2 cut(s)	56, 238
AjnI	CCWGG	1 cut(s)	273
AluBI	AGCT	1 cut(s)	190
AluI	AGCT	1 cut(s)	190
AlwI	GGATC	3 cut(s)	167, 180, 264
Ama87I	CYCGRG	2 cut(s)	45, 63
Aor13HI	TCCGGA	1 cut(s)	175
AoxI	GGCC	6 cut(s)	19, 87, 96, 128, 183, 276
AspS9I	GGNCC	2 cut(s)	87, 92
AsuHPI	GGTGA	1 cut(s)	119
AvaI	CYCGRG	2 cut(s)	45, 63
AvaII	GGWCC	1 cut(s)	92
BaeI	ACNNNNGTAYC	2 cut(s)	102, 135
BamHI	GGATCC	1 cut(s)	172
BccI	CCATC	1 cut(s)	74
BceAI	ACGGC	3 cut(s)	53, 129, 166
BciT130I	CCWGG	1 cut(s)	275
BfaI	CTAG	1 cut(s)	123
BglI	GCCNNNNNGGC	1 cut(s)	95
BmcAI	AGTACT	1 cut(s)	51
Bme1390I	CCNGG	1 cut(s)	275
Bme18I	GGWCC	1 cut(s)	92
BmeT110I	CYCGRG	2 cut(s)	45, 63
BmgT120I	GGNCC	2 cut(s)	87, 92
BmiI	GGNNCC	1 cut(s)	174
BmrFI	CCNGG	1 cut(s)	275
BpuEI	CTTGAG	1 cut(s)	281
BsaJI	CCNNGG	1 cut(s)	144
BsaWI	WCCGGW	1 cut(s)	175
Bsc4I	CCNNNNNNNGG	2 cut(s)	149, 192
Bse118I	RCCGGY	2 cut(s)	94, 301
Bse1I	ACTGG	1 cut(s)	322
BseAI	TCCGGA	1 cut(s)	175
BseBI	CCWGG	1 cut(s)	275
BseDI	CCNNGG	1 cut(s)	144
BseGI	GGATG	1 cut(s)	82
BseLI	CCNNNNNNNGG	2 cut(s)	149, 192
BseNI	ACTGG	1 cut(s)	322
BshFI	GGCC	6 cut(s)	21, 89, 98, 130, 185, 278
BsiHKCI	CYCGRG	2 cut(s)	45, 63
BsiSI	CCGG	4 cut(s)	90, 95, 176, 302
BslFI	GGGAC	1 cut(s)	209
BslI	CCNNNNNNNGG	2 cut(s)	149, 192
BsmFI	GGGAC	1 cut(s)	209
BsnI	GGCC	6 cut(s)	21, 89, 98, 130, 185, 278
BsoBI	CYCGRG	2 cut(s)	45, 63
Bsp13I	TCCGGA	1 cut(s)	175
Bsp1407I	TGTACA	1 cut(s)	31
Bsp143I	GATC	2 cut(s)	172, 256
BspACI	CCGC	3 cut(s)	116, 254, 267
BspANI	GGCC	6 cut(s)	21, 89, 98, 130, 185, 278
BspEI	TCCGGA	1 cut(s)	175
BspLI	GGNNCC	1 cut(s)	174
BspPI	GGATC	3 cut(s)	167, 180, 264
BsrBI	CCGCTC	1 cut(s)	267
BsrFI	RCCGGY	2 cut(s)	94, 301
BsrGI	TGTACA	1 cut(s)	31
BsrI	ACTGG	1 cut(s)	322
BssAI	RCCGGY	2 cut(s)	94, 301
BssECI	CCNNGG	1 cut(s)	144
BssMI	GATC	2 cut(s)	172, 256
BssT1I	CCWWGG	1 cut(s)	144
Bst2UI	CCWGG	1 cut(s)	275
Bst4CI	ACNGT	1 cut(s)	107
Bst6I	CTCTTC	1 cut(s)	174
BstAUI	TGTACA	1 cut(s)	31
BstEII	GGTNACC	1 cut(s)	269
BstF5I	GGATG	1 cut(s)	82
BstKTI	GATC	2 cut(s)	175, 259
BstMBI	GATC	2 cut(s)	172, 256
BstMWI	GCNNNNNNNGC	1 cut(s)	95
BstNI	CCWGG	1 cut(s)	275
BstPI	GGTNACC	1 cut(s)	269
BstSCI	CCNGG	1 cut(s)	273
BstX2I	RGATCY	2 cut(s)	172, 256
BstYI	RGATCY	2 cut(s)	172, 256
BsuRI	GGCC	6 cut(s)	21, 89, 98, 130, 185, 278
BtsCI	GGATG	1 cut(s)	82
Cfr10I	RCCGGY	2 cut(s)	94, 301
Cfr13I	GGNCC	2 cut(s)	87, 92
CpoI	CGGWCCG	1 cut(s)	92
Csp6I	GTAC	2 cut(s)	32, 50
CspI	CGGWCCG	1 cut(s)	92
CviAII	CATG	1 cut(s)	35
CviQI	GTAC	2 cut(s)	32, 50
DpnI	GATC	2 cut(s)	174, 258
DpnII	GATC	2 cut(s)	172, 256
Eam1104I	CTCTTC	1 cut(s)	174
EarI	CTCTTC	1 cut(s)	174
EciI	GGCGGA	1 cut(s)	269
Eco130I	CCWWGG	1 cut(s)	144
Eco147I	AGGCCT	2 cut(s)	21, 278
Eco47I	GGWCC	1 cut(s)	92
Eco88I	CYCGRG	2 cut(s)	45, 63
Eco91I	GGTNACC	1 cut(s)	269
EcoO65I	GGTNACC	1 cut(s)	269
EcoRII	CCWGG	1 cut(s)	273
EcoT14I	CCWWGG	1 cut(s)	144
ErhI	CCWWGG	1 cut(s)	144
FaeI	CATG	1 cut(s)	38
FaiI	YATR	2 cut(s)	36, 162
FalI	AAGNNNNNCTT	2 cut(s)	276, 308
FaqI	GGGAC	1 cut(s)	209
FatI	CATG	1 cut(s)	34
FokI	GGATG	1 cut(s)	89
FspBI	CTAG	1 cut(s)	123
HaeIII	GGCC	6 cut(s)	21, 89, 98, 130, 185, 278
HapII	CCGG	4 cut(s)	90, 95, 176, 302
Hin1II	CATG	1 cut(s)	38
HindIII	AAGCTT	1 cut(s)	188
HpaII	CCGG	4 cut(s)	90, 95, 176, 302
HphI	GGTGA	1 cut(s)	119
Hpy188III	TCNNGA	5 cut(s)	45, 56, 176, 194, 260
HpyAV	CCTTC	1 cut(s)	149
HpyCH4III	ACNGT	1 cut(s)	107
HpyCH4V	TGCA	1 cut(s)	283
HpyF10VI	GCNNNNNNNGC	1 cut(s)	95
Hsp92II	CATG	1 cut(s)	38
Kpn2I	TCCGGA	1 cut(s)	175
Kzo9I	GATC	2 cut(s)	172, 256
LpnPI	CCDG	9 cut(s)	70, 103, 108, 184, 189, 260, 287, 303, 315
MaeI	CTAG	1 cut(s)	123
MaeIII	GTNAC	1 cut(s)	269
MalI	GATC	2 cut(s)	174, 258
MbiI	CCGCTC	1 cut(s)	267
MboI	GATC	2 cut(s)	172, 256
MboII	GAAGA	1 cut(s)	191
MflI	RGATCY	2 cut(s)	172, 256
MluCI	AATT	2 cut(s)	205, 232
MnlI	CCTC	3 cut(s)	109, 163, 175
MroI	TCCGGA	1 cut(s)	175
MseI	TTAA	1 cut(s)	204
MspI	CCGG	4 cut(s)	90, 95, 176, 302
MspR9I	CCNGG	1 cut(s)	275
MvaI	CCWGG	1 cut(s)	275
MwoI	GCNNNNNNNGC	1 cut(s)	95
NdeII	GATC	2 cut(s)	172, 256
NlaIII	CATG	1 cut(s)	38
NlaIV	GGNNCC	1 cut(s)	174
PaeR7I	CTCGAG	2 cut(s)	45, 63
PceI	AGGCCT	2 cut(s)	21, 278
Psp6I	CCWGG	1 cut(s)	273
PspEI	GGTNACC	1 cut(s)	269
PspGI	CCWGG	1 cut(s)	273
PspN4I	GGNNCC	1 cut(s)	174
PspPI	GGNCC	2 cut(s)	87, 92
PspXI	VCTCGAGB	1 cut(s)	63
PsuI	RGATCY	2 cut(s)	172, 256
RsaI	GTAC	2 cut(s)	33, 51
RsaNI	GTAC	2 cut(s)	32, 50
Rsr2I	CGGWCCG	1 cut(s)	92
RsrII	CGGWCCG	1 cut(s)	92
SaqAI	TTAA	1 cut(s)	204
Sau3AI	GATC	2 cut(s)	172, 256
Sau96I	GGNCC	2 cut(s)	87, 92
ScaI	AGTACT	1 cut(s)	51
ScrFI	CCNGG	1 cut(s)	275
SetI	ASST	1 cut(s)	192
SfiI	GGCCNNNNNGGCC	1 cut(s)	95
Sfr274I	CTCGAG	2 cut(s)	45, 63
SinI	GGWCC	1 cut(s)	92
SlaI	CTCGAG	2 cut(s)	45, 63
SmlI	CTYRAG	3 cut(s)	45, 63, 260
SmoI	CTYRAG	3 cut(s)	45, 63, 260
Sse9I	AATT	2 cut(s)	205, 232
SseBI	AGGCCT	2 cut(s)	21, 278
SsiI	CCGC	3 cut(s)	116, 254, 267
SspMI	CTAG	1 cut(s)	123
StuI	AGGCCT	2 cut(s)	21, 278
StyD4I	CCNGG	1 cut(s)	273
StyI	CCWWGG	1 cut(s)	144
TaaI	ACNGT	1 cut(s)	107
TaqI	TCGA	2 cut(s)	46, 64
TasI	AATT	2 cut(s)	205, 232
TatI	WGTACW	2 cut(s)	31, 49
Tru1I	TTAA	1 cut(s)	204
Tru9I	TTAA	1 cut(s)	204
TspDTI	ATGAA	1 cut(s)	51
VpaK11BI	GGWCC	1 cut(s)	92
XhoI	CTCGAG	2 cut(s)	45, 63
XspI	CTAG	1 cut(s)	123
ZrmI	AGTACT	1 cut(s)	51

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.