Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0002427

Physical Location & Seq

Genomic Coordinates Forward (+)

12847547 .. 12847792

Gene Structure 246 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00091250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 246 bp

ATGTATAGCAATTTCAAGAAAGCTATTTCCCGGATATTCACCGAGTACTTGTACAGCGCTGTGGAGATTTGTATCGTTTTAGATGACGGCGGGCCCAGCTTGGCCTTCAACGGTGATGCGGCGGTGGCTACTAGTCGAAGACCAACCCTAAGGATGGCAAAGGCGGCGATGGGGATGATCCGGAGCAGGCCAAGCTCGAGCGGGCTTAATTTTCCGGTCAAGTTCCCTCGGTTCTTTAGTGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000902 GO:0000904 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005768 GO:0005770 GO:0005771 GO:0005911 GO:0006629 GO:0006810 GO:0006900 GO:0006914 GO:0006996 GO:0007032 GO:0007033 GO:0007034 GO:0008104 GO:0008144 GO:0008150 GO:0008152 GO:0008202 GO:0009056 GO:0009506 GO:0009653 GO:0009888 GO:0009987 GO:0010008 GO:0010026 GO:0010090 GO:0010091 GO:0010256 GO:0012505 GO:0016020 GO:0016043 GO:0016050 GO:0016125 GO:0016192 GO:0016197 GO:0016236 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0022607 GO:0030054 GO:0030154 GO:0030554 GO:0031090 GO:0031410 GO:0031982 GO:0032502 GO:0032507 GO:0032509 GO:0032511 GO:0032553 GO:0032555 GO:0032559 GO:0032989 GO:0032991 GO:0033036 GO:0033365 GO:0034067 GO:0034613 GO:0035639 GO:0036094 GO:0036452 GO:0042592 GO:0042802 GO:0042803 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045053 GO:0045185 GO:0045324 GO:0046907 GO:0046983 GO:0048468 GO:0048856 GO:0048869 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0051235 GO:0051259 GO:0051260 GO:0051641 GO:0051649 GO:0051651 GO:0055044 GO:0055065 GO:0055067 GO:0055075 GO:0055078 GO:0055080 GO:0061024 GO:0061919 GO:0065003 GO:0065007 GO:0065008 GO:0070676 GO:0070727 GO:0071704 GO:0071840 GO:0071985 GO:0090558 GO:0090626 GO:0097159 GO:0097367 GO:0097708 GO:0098588 GO:0098771 GO:0098796 GO:0098805 GO:1901265 GO:1901360 GO:1901363 GO:1901615 GO:1902494 GO:1904949 GO:1990621

KEGG Pathways

Metabolic & Signaling

ko04144 ko04217 map04144 map04217

Pfam Domains

Protein Families

AAA MIT Vps4_C

Protein Analysis

81

Amino Acids

8.89

Weight (kDa)

10.12

Isoelectric Point (pI)

54.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002427)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08270 AT1G08270 AT2G27600
fragaria_vesca	FvH4_3g24610 FvH4_3g24610 FvH4_3g24610 FvH4_3g24610
malus_domestica	MD03G1141900.v1.1 MD11G1161300.v1.1
prunus_persica	Prupe.6G127200_v2.0.a1
pyrus_communis	pycom03g09670 pycom11g13390
rosa_chinensis	RchiOBHm_Chr2g0101721 RchiOBHm_Chr5g0044161 RchiOBHm_Chr6g0255971 RchiOBHm_Chr6g0260081 RchiOBHm_Chr7g0184771
rosa_laevigata	RLG00000009143 RLG00000014364 RLG00000021343 RLG00000035169 RLG00000036978
rosa_multiflora	Rmu_sc0000363.1_g000012 Rmu_sc0001648.1_g000029 Rmu_sc0001857.1_g000012 Rmu_sc0004300.1_g000002 Rmu_sc0009830.1_g000003
rosa_roxburghii	Rroxscaffold_2G00091250 Rroxscaffold_3G00264580 Rroxscaffold_7G00197410
rosa_rugosa	Rorug03G0333400
rosa_samantha	Rh2BG234400 Rh2CG154700 Rh5AG295900 Rh5BG309400 Rh5CG292800 Rh5CG330700 Rh6AG305600 Rh7BG180900
rosa_wichuraiana	Rw5G027360 Rw5G027430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	201
AccIII	TCCGGA	1 cut(s)	180
AciI	CCGC	5 cut(s)	90, 119, 122, 164, 201
AclWI	GGATC	1 cut(s)	172
AfaI	GTAC	2 cut(s)	47, 53
AfeI	AGCGCT	1 cut(s)	58
AfiI	CCNNNNNNNGG	1 cut(s)	154
AgsI	TTSAA	2 cut(s)	16, 109
AhlI	ACTAGT	1 cut(s)	131
AluBI	AGCT	3 cut(s)	23, 99, 195
AluI	AGCT	3 cut(s)	23, 99, 195
AlwI	GGATC	1 cut(s)	172
Ama87I	CYCGRG	1 cut(s)	196
Aor13HI	TCCGGA	1 cut(s)	180
Aor51HI	AGCGCT	1 cut(s)	58
AoxI	GGCC	3 cut(s)	92, 102, 188
ApaI	GGGCCC	1 cut(s)	96
AspLEI	GCGC	1 cut(s)	59
AspS9I	GGNCC	2 cut(s)	92, 93
AsuC2I	CCSGG	1 cut(s)	31
AsuHPI	GGTGA	2 cut(s)	31, 125
AvaI	CYCGRG	1 cut(s)	196
AxyI	CCTNAGG	1 cut(s)	149
BaeGI	GKGCMC	1 cut(s)	96
BanII	GRGCYC	1 cut(s)	96
BbsI	GAAGAC	1 cut(s)	145
BccI	CCATC	2 cut(s)	148, 163
BceAI	ACGGC	1 cut(s)	103
BcnI	CCSGG	1 cut(s)	31
BcuI	ACTAGT	1 cut(s)	131
BfaI	CTAG	1 cut(s)	132
BfoI	RGCGCY	1 cut(s)	60
BisI	GCNGC	2 cut(s)	120, 165
BlsI	GCNGC	2 cut(s)	121, 166
BmcAI	AGTACT	1 cut(s)	47
Bme1390I	CCNGG	1 cut(s)	31
BmeT110I	CYCGRG	1 cut(s)	196
BmgT120I	GGNCC	2 cut(s)	92, 93
BmiI	GGNNCC	1 cut(s)	94
BmrFI	CCNGG	1 cut(s)	31
BmsI	GCATC	1 cut(s)	106
BpiI	GAAGAC	1 cut(s)	145
BpuMI	CCSGG	1 cut(s)	31
BsaBI	GATNNNNATC	1 cut(s)	71
BsaJI	CCNNGG	1 cut(s)	227
BsaWI	WCCGGW	2 cut(s)	180, 214
Bsc4I	CCNNNNNNNGG	1 cut(s)	154
Bse21I	CCTNAGG	1 cut(s)	149
Bse8I	GATNNNNATC	1 cut(s)	71
BseAI	TCCGGA	1 cut(s)	180
BseDI	CCNNGG	1 cut(s)	227
BseGI	GGATG	2 cut(s)	159, 180
BseJI	GATNNNNATC	1 cut(s)	71
BseLI	CCNNNNNNNGG	1 cut(s)	154
BseSI	GKGCMC	1 cut(s)	96
BseYI	CCCAGC	1 cut(s)	95
BshFI	GGCC	3 cut(s)	94, 104, 190
BsiHKCI	CYCGRG	1 cut(s)	196
BsiSI	CCGG	3 cut(s)	31, 181, 215
BslI	CCNNNNNNNGG	1 cut(s)	154
BsnI	GGCC	3 cut(s)	94, 104, 190
BsoBI	CYCGRG	1 cut(s)	196
Bsp120I	GGGCCC	1 cut(s)	92
Bsp1286I	GDGCHC	1 cut(s)	96
Bsp13I	TCCGGA	1 cut(s)	180
Bsp1407I	TGTACA	1 cut(s)	51
Bsp143I	GATC	1 cut(s)	177
BspACI	CCGC	5 cut(s)	90, 119, 122, 164, 201
BspANI	GGCC	3 cut(s)	94, 104, 190
BspEI	TCCGGA	1 cut(s)	180
BspLI	GGNNCC	1 cut(s)	94
BspPI	GGATC	1 cut(s)	172
BsrBI	CCGCTC	1 cut(s)	201
BsrGI	TGTACA	1 cut(s)	51
BssECI	CCNNGG	1 cut(s)	227
BssMI	GATC	1 cut(s)	177
Bst4CI	ACNGT	1 cut(s)	113
BstAUI	TGTACA	1 cut(s)	51
BstC8I	GCNNGC	3 cut(s)	92, 188, 203
BstDEI	CTNAG	1 cut(s)	149
BstF5I	GGATG	2 cut(s)	159, 180
BstH2I	RGCGCY	1 cut(s)	60
BstHHI	GCGC	1 cut(s)	59
BstKTI	GATC	1 cut(s)	180
BstMBI	GATC	1 cut(s)	177
BstMWI	GCNNNNNNNGC	4 cut(s)	96, 125, 164, 192
BstSCI	CCNGG	1 cut(s)	29
BstSLI	GKGCMC	1 cut(s)	96
BstV2I	GAAGAC	1 cut(s)	145
Bsu36I	CCTNAGG	1 cut(s)	149
BsuRI	GGCC	3 cut(s)	94, 104, 190
BtgZI	GCGATG	1 cut(s)	182
BtsCI	GGATG	2 cut(s)	159, 180
Cac8I	GCNNGC	3 cut(s)	92, 188, 203
CfoI	GCGC	1 cut(s)	59
Cfr13I	GGNCC	2 cut(s)	92, 93
Csp6I	GTAC	2 cut(s)	46, 52
CviJI	RGCY	8 cut(s)	23, 94, 99, 104, 128, 190, 195, 205
CviKI_1	RGCY	8 cut(s)	23, 94, 99, 104, 128, 190, 195, 205
CviQI	GTAC	2 cut(s)	46, 52
DdeI	CTNAG	1 cut(s)	149
DpnI	GATC	1 cut(s)	179
DpnII	GATC	1 cut(s)	177
Eco24I	GRGCYC	1 cut(s)	96
Eco47III	AGCGCT	1 cut(s)	58
Eco81I	CCTNAGG	1 cut(s)	149
Eco88I	CYCGRG	1 cut(s)	196
EcoT38I	GRGCYC	1 cut(s)	96
FaiI	YATR	1 cut(s)	6
FauI	CCCGC	2 cut(s)	83, 194
Fnu4HI	GCNGC	2 cut(s)	120, 165
FokI	GGATG	2 cut(s)	166, 187
FriOI	GRGCYC	1 cut(s)	96
Fsp4HI	GCNGC	2 cut(s)	120, 165
FspBI	CTAG	1 cut(s)	132
GlaI	GCGC	1 cut(s)	58
GluI	GCNGC	2 cut(s)	120, 165
GsaI	CCCAGC	1 cut(s)	99
HaeII	RGCGCY	1 cut(s)	60
HaeIII	GGCC	3 cut(s)	94, 104, 190
HapII	CCGG	3 cut(s)	31, 181, 215
HhaI	GCGC	1 cut(s)	59
Hin6I	GCGC	1 cut(s)	57
HinP1I	GCGC	1 cut(s)	57
HpaII	CCGG	3 cut(s)	31, 181, 215
HphI	GGTGA	2 cut(s)	31, 125
Hpy188III	TCNNGA	2 cut(s)	16, 181
HpyAV	CCTTC	1 cut(s)	115
HpyCH4III	ACNGT	1 cut(s)	113
HpyF10VI	GCNNNNNNNGC	4 cut(s)	96, 125, 164, 192
HpyF3I	CTNAG	1 cut(s)	149
HspAI	GCGC	1 cut(s)	57
Kpn2I	TCCGGA	1 cut(s)	180
Kzo9I	GATC	1 cut(s)	177
LmnI	GCTCC	1 cut(s)	183
LpnPI	CCDG	5 cut(s)	44, 109, 172, 194, 228
LweI	GCATC	1 cut(s)	106
MaeI	CTAG	1 cut(s)	132
MalI	GATC	1 cut(s)	179
MbiI	CCGCTC	1 cut(s)	201
MboI	GATC	1 cut(s)	177
MboII	GAAGA	1 cut(s)	150
MhlI	GDGCHC	1 cut(s)	96
MluCI	AATT	2 cut(s)	10, 208
MnlI	CCTC	1 cut(s)	237
MroI	TCCGGA	1 cut(s)	180
MseI	TTAA	1 cut(s)	207
MspI	CCGG	3 cut(s)	31, 181, 215
MspR9I	CCNGG	1 cut(s)	31
MwoI	GCNNNNNNNGC	4 cut(s)	96, 125, 164, 192
NciI	CCSGG	1 cut(s)	31
NdeII	GATC	1 cut(s)	177
NlaIV	GGNNCC	1 cut(s)	94
PaeR7I	CTCGAG	1 cut(s)	196
PfoI	TCCNGGA	1 cut(s)	29
PkrI	GCNGC	2 cut(s)	121, 166
PspFI	CCCAGC	1 cut(s)	95
PspN4I	GGNNCC	1 cut(s)	94
PspOMI	GGGCCC	1 cut(s)	92
PspPI	GGNCC	2 cut(s)	92, 93
PspXI	VCTCGAGB	1 cut(s)	196
RsaI	GTAC	2 cut(s)	47, 53
RsaNI	GTAC	2 cut(s)	46, 52
SaqAI	TTAA	1 cut(s)	207
SatI	GCNGC	2 cut(s)	120, 165
Sau3AI	GATC	1 cut(s)	177
Sau96I	GGNCC	2 cut(s)	92, 93
ScaI	AGTACT	1 cut(s)	47
ScrFI	CCNGG	1 cut(s)	31
SduI	GDGCHC	1 cut(s)	96
SetI	ASST	3 cut(s)	25, 101, 197
SfaNI	GCATC	1 cut(s)	106
Sfr274I	CTCGAG	1 cut(s)	196
SlaI	CTCGAG	1 cut(s)	196
SmlI	CTYRAG	1 cut(s)	196
SmoI	CTYRAG	1 cut(s)	196
SpeI	ACTAGT	1 cut(s)	131
Sse9I	AATT	2 cut(s)	10, 208
SsiI	CCGC	5 cut(s)	90, 119, 122, 164, 201
SspMI	CTAG	1 cut(s)	132
StyD4I	CCNGG	1 cut(s)	29
TaaI	ACNGT	1 cut(s)	113
TaqI	TCGA	2 cut(s)	136, 197
TasI	AATT	2 cut(s)	10, 208
TatI	WGTACW	2 cut(s)	45, 51
TauI	GCSGC	2 cut(s)	122, 167
Tru1I	TTAA	1 cut(s)	207
Tru9I	TTAA	1 cut(s)	207
XhoI	CTCGAG	1 cut(s)	196
XspI	CTAG	1 cut(s)	132
ZrmI	AGTACT	1 cut(s)	47

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.