Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0002427

Physical Location & Seq

Genomic Coordinates Reverse (-)

52156269 .. 52156675

Gene Structure 407 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000014364

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGCTCGAAACTACGCAAGGGCTTTCCTTTGTATATGAACGCTCTCGAATTCGCGCCATTTCGGATGATGGCAAGGCCGGACCAGCCTCCAACGGTGATGCGGCTGTGGCTAGTAGGCCGAAAACCAAGCCCAAGGACGGCGAAGGCTATGATGGGGAGGATCCCGAGCAGACCAAGCTCCGGGACGGGCTTAATTTGGCGATTATTAGGGGAAAACCCAATTTCAAGTGGAATGATGTGGCGGGTCTCGAGAGCGGTAACCAGGCCTTGCAAGTGGCACTTGTATTGCCCGTCAAGTTCCTTACTTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000902 GO:0000904 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005768 GO:0005770 GO:0005771 GO:0005911 GO:0006629 GO:0006810 GO:0006900 GO:0006914 GO:0006996 GO:0007032 GO:0007033 GO:0007034 GO:0008104 GO:0008144 GO:0008150 GO:0008152 GO:0008202 GO:0009056 GO:0009506 GO:0009653 GO:0009888 GO:0009987 GO:0010008 GO:0010026 GO:0010090 GO:0010091 GO:0010256 GO:0012505 GO:0016020 GO:0016043 GO:0016050 GO:0016125 GO:0016192 GO:0016197 GO:0016236 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0022607 GO:0030054 GO:0030154 GO:0030554 GO:0031090 GO:0031410 GO:0031982 GO:0032502 GO:0032507 GO:0032509 GO:0032511 GO:0032553 GO:0032555 GO:0032559 GO:0032989 GO:0032991 GO:0033036 GO:0033365 GO:0034067 GO:0034613 GO:0035639 GO:0036094 GO:0036452 GO:0042592 GO:0042802 GO:0042803 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045053 GO:0045185 GO:0045324 GO:0046907 GO:0046983 GO:0048468 GO:0048856 GO:0048869 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0051235 GO:0051259 GO:0051260 GO:0051641 GO:0051649 GO:0051651 GO:0055044 GO:0055065 GO:0055067 GO:0055075 GO:0055078 GO:0055080 GO:0061024 GO:0061919 GO:0065003 GO:0065007 GO:0065008 GO:0070676 GO:0070727 GO:0071704 GO:0071840 GO:0071985 GO:0090558 GO:0090626 GO:0097159 GO:0097367 GO:0097708 GO:0098588 GO:0098771 GO:0098796 GO:0098805 GO:1901265 GO:1901360 GO:1901363 GO:1901615 GO:1902494 GO:1904949 GO:1990621

KEGG Pathways

Metabolic & Signaling

ko04144 ko04217 map04144 map04217

Pfam Domains

Protein Families

AAA MIT Vps4_C

Protein Analysis

104

Amino Acids

11.08

Weight (kDa)

6.24

Isoelectric Point (pI)

25.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002427)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08270 AT1G08270 AT2G27600
fragaria_vesca	FvH4_3g24610 FvH4_3g24610 FvH4_3g24610 FvH4_3g24610
malus_domestica	MD03G1141900.v1.1 MD11G1161300.v1.1
prunus_persica	Prupe.6G127200_v2.0.a1
pyrus_communis	pycom03g09670 pycom11g13390
rosa_chinensis	RchiOBHm_Chr2g0101721 RchiOBHm_Chr5g0044161 RchiOBHm_Chr6g0255971 RchiOBHm_Chr6g0260081 RchiOBHm_Chr7g0184771
rosa_laevigata	RLG00000009143 RLG00000014364 RLG00000021343 RLG00000035169 RLG00000036978
rosa_multiflora	Rmu_sc0000363.1_g000012 Rmu_sc0001648.1_g000029 Rmu_sc0001857.1_g000012 Rmu_sc0004300.1_g000002 Rmu_sc0009830.1_g000003
rosa_roxburghii	Rroxscaffold_2G00091250 Rroxscaffold_3G00264580 Rroxscaffold_7G00197410
rosa_rugosa	Rorug03G0333400
rosa_samantha	Rh2BG234400 Rh2CG154700 Rh5AG295900 Rh5BG309400 Rh5CG292800 Rh5CG330700 Rh6AG305600 Rh7BG180900
rosa_wichuraiana	Rw5G027360 Rw5G027430

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	255
AccII	CGCG	1 cut(s)	54
AciI	CCGC	3 cut(s)	101, 242, 255
AclWI	GGATC	2 cut(s)	155, 168
AcsI	RAATTY	1 cut(s)	48
AfiI	CCNNNNNNNGG	2 cut(s)	137, 180
AgsI	TTSAA	1 cut(s)	226
AjnI	CCWGG	1 cut(s)	261
AluBI	AGCT	1 cut(s)	178
AluI	AGCT	1 cut(s)	178
Alw26I	GTCTC	1 cut(s)	251
AlwI	GGATC	2 cut(s)	155, 168
Ama87I	CYCGRG	2 cut(s)	164, 248
AoxI	GGCC	3 cut(s)	75, 116, 264
ApoI	RAATTY	1 cut(s)	48
AspLEI	GCGC	1 cut(s)	56
AspS9I	GGNCC	1 cut(s)	80
AsuC2I	CCSGG	1 cut(s)	182
AsuHPI	GGTGA	1 cut(s)	107
AvaI	CYCGRG	2 cut(s)	164, 248
AvaII	GGWCC	1 cut(s)	80
BamHI	GGATCC	1 cut(s)	160
BccI	CCATC	2 cut(s)	62, 146
BceAI	ACGGC	1 cut(s)	154
BciT130I	CCWGG	1 cut(s)	263
BcnI	CCSGG	1 cut(s)	182
BcoDI	GTCTC	1 cut(s)	251
BfaI	CTAG	1 cut(s)	111
BisI	GCNGC	1 cut(s)	102
BlsI	GCNGC	1 cut(s)	103
Bme1390I	CCNGG	2 cut(s)	182, 263
Bme18I	GGWCC	1 cut(s)	80
BmeT110I	CYCGRG	2 cut(s)	164, 248
BmgT120I	GGNCC	1 cut(s)	80
BmiI	GGNNCC	1 cut(s)	162
BmrFI	CCNGG	2 cut(s)	182, 263
BmsI	GCATC	1 cut(s)	88
BpuMI	CCSGG	1 cut(s)	182
BsaI	GGTCTC	1 cut(s)	251
BsaJI	CCNNGG	1 cut(s)	132
Bsc4I	CCNNNNNNNGG	2 cut(s)	137, 180
BseBI	CCWGG	1 cut(s)	263
BseDI	CCNNGG	1 cut(s)	132
BseGI	GGATG	1 cut(s)	70
BseLI	CCNNNNNNNGG	2 cut(s)	137, 180
Bsh1236I	CGCG	1 cut(s)	54
BshFI	GGCC	3 cut(s)	77, 118, 266
BsiHKCI	CYCGRG	2 cut(s)	164, 248
BsiSI	CCGG	2 cut(s)	78, 181
BslFI	GGGAC	1 cut(s)	197
BslI	CCNNNNNNNGG	2 cut(s)	137, 180
BsmAI	GTCTC	1 cut(s)	251
BsmFI	GGGAC	1 cut(s)	197
BsnI	GGCC	3 cut(s)	77, 118, 266
Bso31I	GGTCTC	1 cut(s)	251
BsoBI	CYCGRG	2 cut(s)	164, 248
Bsp143I	GATC	1 cut(s)	160
BspACI	CCGC	3 cut(s)	101, 242, 255
BspANI	GGCC	3 cut(s)	77, 118, 266
BspFNI	CGCG	1 cut(s)	54
BspLI	GGNNCC	1 cut(s)	162
BspPI	GGATC	2 cut(s)	155, 168
BspTNI	GGTCTC	1 cut(s)	251
BsrBI	CCGCTC	1 cut(s)	255
BssECI	CCNNGG	1 cut(s)	132
BssMI	GATC	1 cut(s)	160
BssT1I	CCWWGG	1 cut(s)	132
Bst2UI	CCWGG	1 cut(s)	263
Bst4CI	ACNGT	1 cut(s)	95
BstEII	GGTNACC	1 cut(s)	257
BstF5I	GGATG	1 cut(s)	70
BstFNI	CGCG	1 cut(s)	54
BstHHI	GCGC	1 cut(s)	56
BstKTI	GATC	1 cut(s)	163
BstMAI	GTCTC	1 cut(s)	251
BstMBI	GATC	1 cut(s)	160
BstMWI	GCNNNNNNNGC	3 cut(s)	83, 107, 175
BstNI	CCWGG	1 cut(s)	263
BstPI	GGTNACC	1 cut(s)	257
BstSCI	CCNGG	2 cut(s)	180, 261
BstUI	CGCG	1 cut(s)	54
BstX2I	RGATCY	1 cut(s)	160
BstYI	RGATCY	1 cut(s)	160
BsuRI	GGCC	3 cut(s)	77, 118, 266
BtsCI	GGATG	1 cut(s)	70
CfoI	GCGC	1 cut(s)	56
Cfr13I	GGNCC	1 cut(s)	80
DpnI	GATC	1 cut(s)	162
DpnII	GATC	1 cut(s)	160
Eco130I	CCWWGG	1 cut(s)	132
Eco147I	AGGCCT	1 cut(s)	266
Eco31I	GGTCTC	1 cut(s)	251
Eco47I	GGWCC	1 cut(s)	80
Eco88I	CYCGRG	2 cut(s)	164, 248
Eco91I	GGTNACC	1 cut(s)	257
EcoO65I	GGTNACC	1 cut(s)	257
EcoRI	GAATTC	1 cut(s)	48
EcoRII	CCWGG	1 cut(s)	261
EcoT14I	CCWWGG	1 cut(s)	132
ErhI	CCWWGG	1 cut(s)	132
FaiI	YATR	3 cut(s)	34, 36, 150
FalI	AAGNNNNNCTT	2 cut(s)	264, 296
FaqI	GGGAC	1 cut(s)	197
FauI	CCCGC	1 cut(s)	235
Fnu4HI	GCNGC	1 cut(s)	102
FokI	GGATG	1 cut(s)	77
Fsp4HI	GCNGC	1 cut(s)	102
FspBI	CTAG	1 cut(s)	111
GlaI	GCGC	1 cut(s)	55
GluI	GCNGC	1 cut(s)	102
HaeIII	GGCC	3 cut(s)	77, 118, 266
HapII	CCGG	2 cut(s)	78, 181
HhaI	GCGC	1 cut(s)	56
Hin6I	GCGC	1 cut(s)	54
HinP1I	GCGC	1 cut(s)	54
HpaII	CCGG	2 cut(s)	78, 181
HphI	GGTGA	1 cut(s)	107
Hpy188I	TCNGA	1 cut(s)	64
Hpy188III	TCNNGA	4 cut(s)	45, 164, 248, 250
HpyAV	CCTTC	1 cut(s)	137
HpyCH4III	ACNGT	1 cut(s)	95
HpyCH4V	TGCA	1 cut(s)	271
HpyF10VI	GCNNNNNNNGC	3 cut(s)	83, 107, 175
HspAI	GCGC	1 cut(s)	54
Kzo9I	GATC	1 cut(s)	160
LmnI	GCTCC	1 cut(s)	183
LpnPI	CCDG	5 cut(s)	91, 96, 194, 248, 275
LweI	GCATC	1 cut(s)	88
MaeI	CTAG	1 cut(s)	111
MaeIII	GTNAC	1 cut(s)	257
MalI	GATC	1 cut(s)	162
MbiI	CCGCTC	1 cut(s)	255
MboI	GATC	1 cut(s)	160
MflI	RGATCY	1 cut(s)	160
MluCI	AATT	3 cut(s)	48, 193, 220
MmeI	TCCRAC	1 cut(s)	114
MnlI	CCTC	2 cut(s)	97, 151
MseI	TTAA	1 cut(s)	192
MspI	CCGG	2 cut(s)	78, 181
MspR9I	CCNGG	2 cut(s)	182, 263
MvaI	CCWGG	1 cut(s)	263
MvnI	CGCG	1 cut(s)	54
MwoI	GCNNNNNNNGC	3 cut(s)	83, 107, 175
NciI	CCSGG	1 cut(s)	182
NdeII	GATC	1 cut(s)	160
NlaIV	GGNNCC	1 cut(s)	162
PaeR7I	CTCGAG	1 cut(s)	248
PceI	AGGCCT	1 cut(s)	266
PfoI	TCCNGGA	1 cut(s)	180
PkrI	GCNGC	1 cut(s)	103
Psp6I	CCWGG	1 cut(s)	261
PspEI	GGTNACC	1 cut(s)	257
PspGI	CCWGG	1 cut(s)	261
PspN4I	GGNNCC	1 cut(s)	162
PspPI	GGNCC	1 cut(s)	80
PsuI	RGATCY	1 cut(s)	160
SaqAI	TTAA	1 cut(s)	192
SatI	GCNGC	1 cut(s)	102
Sau3AI	GATC	1 cut(s)	160
Sau96I	GGNCC	1 cut(s)	80
ScrFI	CCNGG	2 cut(s)	182, 263
SetI	ASST	1 cut(s)	180
SfaNI	GCATC	1 cut(s)	88
Sfr274I	CTCGAG	1 cut(s)	248
SinI	GGWCC	1 cut(s)	80
SlaI	CTCGAG	1 cut(s)	248
SmlI	CTYRAG	1 cut(s)	248
SmoI	CTYRAG	1 cut(s)	248
Sse9I	AATT	3 cut(s)	48, 193, 220
SseBI	AGGCCT	1 cut(s)	266
SsiI	CCGC	3 cut(s)	101, 242, 255
SspMI	CTAG	1 cut(s)	111
StuI	AGGCCT	1 cut(s)	266
StyD4I	CCNGG	2 cut(s)	180, 261
StyI	CCWWGG	1 cut(s)	132
TaaI	ACNGT	1 cut(s)	95
TaqI	TCGA	3 cut(s)	6, 46, 249
TasI	AATT	3 cut(s)	48, 193, 220
TauI	GCSGC	1 cut(s)	104
Tru1I	TTAA	1 cut(s)	192
Tru9I	TTAA	1 cut(s)	192
TspDTI	ATGAA	1 cut(s)	51
VpaK11BI	GGWCC	1 cut(s)	80
XapI	RAATTY	1 cut(s)	48
XhoI	CTCGAG	1 cut(s)	248
XspI	CTAG	1 cut(s)	111

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.