RLG00000036978

Belongs to the AAA ATPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0002427
Physical Location & Seq
Reverse (-)
87193999 .. 87194371
373 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036978

Sequence Viewer

Length: 342 bp
ATGAACGCTCTCGAGAACCCTAAGATCAAGGAGGCTATTACCCAGAAATTCACCGAGTACTTGCGTCGCGCTGTGGAGATTCGCTCCGTTTTGGATGATGGCAGGGCCGGACCGGCCTCCAACGGTGATGCGGCGGTGGCTAGTAGGCCAAAAACCAAGTCCAAGGACGGCGAAGGCTATGATAGGGAGGATCCAGAGCAGGCCAAGCTCCGGGACGGGCTTAATTCGGCGATTATTAGGGGAAAACCCAATTTCAAGTGGAATGATGTGGCGGGTCTCGAGAGCGGTAACCAGGCCTTGCAAGTGGCACTTGTATTACCGGTCAAGTTCCTTACTGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0000902 GO:0000904 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005768 GO:0005770 GO:0005771 GO:0005911 GO:0006629 GO:0006810 GO:0006900 GO:0006914 GO:0006996 GO:0007032 GO:0007033 GO:0007034 GO:0008104 GO:0008144 GO:0008150 GO:0008152 GO:0008202 GO:0009056 GO:0009506 GO:0009653 GO:0009888 GO:0009987 GO:0010008 GO:0010026 GO:0010090 GO:0010091 GO:0010256 GO:0012505 GO:0016020 GO:0016043 GO:0016050 GO:0016125 GO:0016192 GO:0016197 GO:0016236 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0022607 GO:0030054 GO:0030154 GO:0030554 GO:0031090 GO:0031410 GO:0031982 GO:0032502 GO:0032507 GO:0032509 GO:0032511 GO:0032553 GO:0032555 GO:0032559 GO:0032989 GO:0032991 GO:0033036 GO:0033365 GO:0034067 GO:0034613 GO:0035639 GO:0036094 GO:0036452 GO:0042592 GO:0042802 GO:0042803 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045053 GO:0045185 GO:0045324 GO:0046907 GO:0046983 GO:0048468 GO:0048856 GO:0048869 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0051235 GO:0051259 GO:0051260 GO:0051641 GO:0051649 GO:0051651 GO:0055044 GO:0055065 GO:0055067 GO:0055075 GO:0055078 GO:0055080 GO:0061024 GO:0061919 GO:0065003 GO:0065007 GO:0065008 GO:0070676 GO:0070727 GO:0071704 GO:0071840 GO:0071985 GO:0090558 GO:0090626 GO:0097159 GO:0097367 GO:0097708 GO:0098588 GO:0098771 GO:0098796 GO:0098805 GO:1901265 GO:1901360 GO:1901363 GO:1901615 GO:1902494 GO:1904949 GO:1990621
KEGG Pathways
Metabolic & Signaling
ko04144 ko04217 map04144 map04217
Pfam Domains
Protein Families
AAA MIT Vps4_C

Protein Analysis

114

Amino Acids

12.29

Weight (kDa)

8.96

Isoelectric Point (pI)

32.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 285
AccII CGCG 1 cut(s) 69
AciI CCGC 4 cut(s) 131, 134, 272, 285
AclWI GGATC 2 cut(s) 185, 198
AcsI RAATTY 1 cut(s) 47
AfaI GTAC 1 cut(s) 59
AfiI CCNNNNNNNGG 1 cut(s) 210
AgeI ACCGGT 1 cut(s) 319
AgsI TTSAA 1 cut(s) 256
AjnI CCWGG 1 cut(s) 291
AluBI AGCT 1 cut(s) 208
AluI AGCT 1 cut(s) 208
Alw26I GTCTC 1 cut(s) 281
AlwI GGATC 2 cut(s) 185, 198
Ama87I CYCGRG 2 cut(s) 11, 278
AoxI GGCC 5 cut(s) 105, 114, 146, 201, 294
ApoI RAATTY 1 cut(s) 47
ArsI GACNNNNNNTTYG 2 cut(s) 143, 175
AsiGI ACCGGT 1 cut(s) 319
AspLEI GCGC 1 cut(s) 71
AspS9I GGNCC 2 cut(s) 105, 110
AsuC2I CCSGG 1 cut(s) 212
AsuHPI GGTGA 2 cut(s) 43, 137
AvaI CYCGRG 2 cut(s) 11, 278
AvaII GGWCC 1 cut(s) 110
BamHI GGATCC 1 cut(s) 190
BccI CCATC 1 cut(s) 92
BceAI ACGGC 1 cut(s) 184
BciT130I CCWGG 1 cut(s) 293
BcnI CCSGG 1 cut(s) 212
BcoDI GTCTC 1 cut(s) 281
BfaI CTAG 1 cut(s) 141
BglI GCCNNNNNGGC 1 cut(s) 113
BisI GCNGC 1 cut(s) 132
BlsI GCNGC 1 cut(s) 133
BmcAI AGTACT 1 cut(s) 59
Bme1390I CCNGG 2 cut(s) 212, 293
Bme18I GGWCC 1 cut(s) 110
BmeT110I CYCGRG 2 cut(s) 11, 278
BmgT120I GGNCC 2 cut(s) 105, 110
BmiI GGNNCC 1 cut(s) 192
BmrFI CCNGG 2 cut(s) 212, 293
BmsI GCATC 1 cut(s) 118
BplI GAGNNNNNCTC 2 cut(s) 68, 100
BpuMI CCSGG 1 cut(s) 212
BsaI GGTCTC 1 cut(s) 281
BsaJI CCNNGG 1 cut(s) 162
BsaWI WCCGGW 1 cut(s) 319
Bsc4I CCNNNNNNNGG 1 cut(s) 210
Bse118I RCCGGY 2 cut(s) 112, 319
Bse1I ACTGG 1 cut(s) 340
BseBI CCWGG 1 cut(s) 293
BseDI CCNNGG 1 cut(s) 162
BseGI GGATG 1 cut(s) 100
BseLI CCNNNNNNNGG 1 cut(s) 210
BseNI ACTGG 1 cut(s) 340
Bsh1236I CGCG 1 cut(s) 69
BshFI GGCC 5 cut(s) 107, 116, 148, 203, 296
BshTI ACCGGT 1 cut(s) 319
BsiHKCI CYCGRG 2 cut(s) 11, 278
BsiSI CCGG 4 cut(s) 108, 113, 211, 320
BslFI GGGAC 1 cut(s) 227
BslI CCNNNNNNNGG 1 cut(s) 210
BsmAI GTCTC 1 cut(s) 281
BsmFI GGGAC 1 cut(s) 227
BsnI GGCC 5 cut(s) 107, 116, 148, 203, 296
Bso31I GGTCTC 1 cut(s) 281
BsoBI CYCGRG 2 cut(s) 11, 278
Bsp143I GATC 2 cut(s) 24, 190
BspACI CCGC 4 cut(s) 131, 134, 272, 285
BspANI GGCC 5 cut(s) 107, 116, 148, 203, 296
BspFNI CGCG 1 cut(s) 69
BspLI GGNNCC 1 cut(s) 192
BspPI GGATC 2 cut(s) 185, 198
BspTNI GGTCTC 1 cut(s) 281
BsrBI CCGCTC 1 cut(s) 285
BsrFI RCCGGY 2 cut(s) 112, 319
BsrI ACTGG 1 cut(s) 340
BssAI RCCGGY 2 cut(s) 112, 319
BssECI CCNNGG 1 cut(s) 162
BssMI GATC 2 cut(s) 24, 190
BssT1I CCWWGG 1 cut(s) 162
Bst2UI CCWGG 1 cut(s) 293
Bst4CI ACNGT 1 cut(s) 125
BstC8I GCNNGC 1 cut(s) 201
BstDEI CTNAG 1 cut(s) 21
BstEII GGTNACC 1 cut(s) 287
BstF5I GGATG 1 cut(s) 100
BstFNI CGCG 1 cut(s) 69
BstHHI GCGC 1 cut(s) 71
BstKTI GATC 2 cut(s) 27, 193
BstMAI GTCTC 1 cut(s) 281
BstMBI GATC 2 cut(s) 24, 190
BstMWI GCNNNNNNNGC 3 cut(s) 113, 137, 205
BstNI CCWGG 1 cut(s) 293
BstPI GGTNACC 1 cut(s) 287
BstSCI CCNGG 2 cut(s) 210, 291
BstUI CGCG 1 cut(s) 69
BstX2I RGATCY 1 cut(s) 190
BstYI RGATCY 1 cut(s) 190
BsuRI GGCC 5 cut(s) 107, 116, 148, 203, 296
BtsCI GGATG 1 cut(s) 100
Cac8I GCNNGC 1 cut(s) 201
CfoI GCGC 1 cut(s) 71
Cfr10I RCCGGY 2 cut(s) 112, 319
Cfr13I GGNCC 2 cut(s) 105, 110
CpoI CGGWCCG 1 cut(s) 110
CseI GACGC 1 cut(s) 53
Csp6I GTAC 1 cut(s) 58
CspAI ACCGGT 1 cut(s) 319
CspI CGGWCCG 1 cut(s) 110
CviQI GTAC 1 cut(s) 58
DdeI CTNAG 1 cut(s) 21
DpnI GATC 2 cut(s) 26, 192
DpnII GATC 2 cut(s) 24, 190
Eco130I CCWWGG 1 cut(s) 162
Eco147I AGGCCT 1 cut(s) 296
Eco31I GGTCTC 1 cut(s) 281
Eco47I GGWCC 1 cut(s) 110
Eco88I CYCGRG 2 cut(s) 11, 278
Eco91I GGTNACC 1 cut(s) 287
EcoO65I GGTNACC 1 cut(s) 287
EcoRII CCWGG 1 cut(s) 291
EcoT14I CCWWGG 1 cut(s) 162
ErhI CCWWGG 1 cut(s) 162
FaiI YATR 1 cut(s) 180
FalI AAGNNNNNCTT 2 cut(s) 294, 326
FaqI GGGAC 1 cut(s) 227
FauI CCCGC 1 cut(s) 265
Fnu4HI GCNGC 1 cut(s) 132
FokI GGATG 1 cut(s) 107
Fsp4HI GCNGC 1 cut(s) 132
FspBI CTAG 1 cut(s) 141
GlaI GCGC 1 cut(s) 70
GluI GCNGC 1 cut(s) 132
HaeIII GGCC 5 cut(s) 107, 116, 148, 203, 296
HapII CCGG 4 cut(s) 108, 113, 211, 320
HgaI GACGC 1 cut(s) 53
HhaI GCGC 1 cut(s) 71
Hin6I GCGC 1 cut(s) 69
HinP1I GCGC 1 cut(s) 69
HinfI GANTC 1 cut(s) 79
HpaII CCGG 4 cut(s) 108, 113, 211, 320
HphI GGTGA 2 cut(s) 43, 137
Hpy188III TCNNGA 5 cut(s) 11, 13, 194, 278, 280
Hpy99I CGWCG 1 cut(s) 69
HpyAV CCTTC 1 cut(s) 167
HpyCH4III ACNGT 1 cut(s) 125
HpyCH4V TGCA 1 cut(s) 301
HpyF10VI GCNNNNNNNGC 3 cut(s) 113, 137, 205
HpyF3I CTNAG 1 cut(s) 21
HspAI GCGC 1 cut(s) 69
Kzo9I GATC 2 cut(s) 24, 190
LmnI GCTCC 2 cut(s) 89, 213
LweI GCATC 1 cut(s) 118
MaeI CTAG 1 cut(s) 141
MaeIII GTNAC 1 cut(s) 287
MalI GATC 2 cut(s) 26, 192
MbiI CCGCTC 1 cut(s) 285
MboI GATC 2 cut(s) 24, 190
MflI RGATCY 1 cut(s) 190
MluCI AATT 3 cut(s) 47, 223, 250
MmeI TCCRAC 1 cut(s) 144
MnlI CCTC 3 cut(s) 25, 127, 181
MseI TTAA 1 cut(s) 222
MspI CCGG 4 cut(s) 108, 113, 211, 320
MspR9I CCNGG 2 cut(s) 212, 293
MvaI CCWGG 1 cut(s) 293
MvnI CGCG 1 cut(s) 69
MwoI GCNNNNNNNGC 3 cut(s) 113, 137, 205
NciI CCSGG 1 cut(s) 212
NdeII GATC 2 cut(s) 24, 190
NlaIV GGNNCC 1 cut(s) 192
PaeR7I CTCGAG 2 cut(s) 11, 278
PceI AGGCCT 1 cut(s) 296
PfeI GAWTC 1 cut(s) 79
PfoI TCCNGGA 1 cut(s) 210
PinAI ACCGGT 1 cut(s) 319
PkrI GCNGC 1 cut(s) 133
Psp6I CCWGG 1 cut(s) 291
PspEI GGTNACC 1 cut(s) 287
PspGI CCWGG 1 cut(s) 291
PspN4I GGNNCC 1 cut(s) 192
PspPI GGNCC 2 cut(s) 105, 110
PsuI RGATCY 1 cut(s) 190
RsaI GTAC 1 cut(s) 59
RsaNI GTAC 1 cut(s) 58
Rsr2I CGGWCCG 1 cut(s) 110
RsrII CGGWCCG 1 cut(s) 110
SaqAI TTAA 1 cut(s) 222
SatI GCNGC 1 cut(s) 132
Sau3AI GATC 2 cut(s) 24, 190
Sau96I GGNCC 2 cut(s) 105, 110
ScaI AGTACT 1 cut(s) 59
ScrFI CCNGG 2 cut(s) 212, 293
SetI ASST 1 cut(s) 210
SfaNI GCATC 1 cut(s) 118
SfiI GGCCNNNNNGGCC 1 cut(s) 113
Sfr274I CTCGAG 2 cut(s) 11, 278
SinI GGWCC 1 cut(s) 110
SlaI CTCGAG 2 cut(s) 11, 278
SmlI CTYRAG 2 cut(s) 11, 278
SmoI CTYRAG 2 cut(s) 11, 278
Sse9I AATT 3 cut(s) 47, 223, 250
SseBI AGGCCT 1 cut(s) 296
SsiI CCGC 4 cut(s) 131, 134, 272, 285
SspMI CTAG 1 cut(s) 141
StuI AGGCCT 1 cut(s) 296
StyD4I CCNGG 2 cut(s) 210, 291
StyI CCWWGG 1 cut(s) 162
TaaI ACNGT 1 cut(s) 125
TaqI TCGA 2 cut(s) 12, 279
TasI AATT 3 cut(s) 47, 223, 250
TatI WGTACW 1 cut(s) 57
TauI GCSGC 1 cut(s) 134
TfiI GAWTC 1 cut(s) 79
Tru1I TTAA 1 cut(s) 222
Tru9I TTAA 1 cut(s) 222
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 76
VpaK11BI GGWCC 1 cut(s) 110
XapI RAATTY 1 cut(s) 47
XhoI CTCGAG 2 cut(s) 11, 278
XspI CTAG 1 cut(s) 141
ZrmI AGTACT 1 cut(s) 59
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.