AT1G12060

BAG family molecular chaperone regulator 5

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0001749
Physical Location & Seq
Forward (+)
4076226 .. 4077230
1005 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G12060.1

Sequence Viewer

Length: 648 bp
ATGAAACGTTCAAGAAAATTCTCATCGTCGACAACAACAACCACCGTTATTCACACTTTCTATAATGACCATACTACCCCTCCGGCAACCAAAGAAATCCCGATTGAAACTCCATTACCGGCGACGAAAGCCAACGTCAAAACAAACGCCACCGCCGCAGCAGCGAGGATTCAGTCTGGCTACCGTTCTTATAGGATCCGAAACCTATACAAGAAAATCTCATCCATCAATCGGGAAGCGAACCGTGTACAGAGCATAATCCAACGGCAAGAAACAGTAGACGCCATTAGAAGCGATGAGAAGGAACGTCTGAGAATGAACGAGACTCTGATGGCTCTGCTTCTGAAACTAGACTCCGTCCCTGGTTTAGATCCGACGATCAGAGAAGCTCGGAGGAAAGTGAGCCGTAAGATCGTAGGGATGCAGGAAATACTCGATTCAATCTCGGAGACTAAAGACGAAATTCAATGGTGGAATTACAACGATCTCGGCGGAGTAGACTCCGGACAAGGCGGTGGCGCGTGGCCTTTGTATTGGGAAGAAGCGGTGGAGGAAGAGATGTGTAGAGAGAGAGGCGGTGAGGAGATGGAGAGATTCTGTGCTCAGTATTTGGGTTTCAGATGTTTCCAGAGATTTCTCAGAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005911 GO:0006457 GO:0008150 GO:0009266 GO:0009506 GO:0009605 GO:0009607 GO:0009628 GO:0009987 GO:0030054 GO:0043207 GO:0050896 GO:0055044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BAG IQ

Protein Analysis

215

Amino Acids

24.79

Weight (kDa)

8.96

Isoelectric Point (pI)

49.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BAG PF02179 73 - 147 5.9e-15 BAG domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 3 cut(s) 29, 279, 498
AccII CGCG 1 cut(s) 521
AccIII TCCGGA 1 cut(s) 503
AciI CCGC 6 cut(s) 153, 156, 492, 513, 545, 576
AclI AACGTT 1 cut(s) 7
AclWI GGATC 3 cut(s) 190, 203, 365
AcsI RAATTY 2 cut(s) 17, 462
AcyI GRCGYC 1 cut(s) 282
AfaI GTAC 1 cut(s) 249
AfiI CCNNNNNNNGG 1 cut(s) 231
AgsI TTSAA 4 cut(s) 12, 107, 441, 467
AjnI CCWGG 1 cut(s) 361
AluBI AGCT 1 cut(s) 389
AluI AGCT 1 cut(s) 389
Alw21I GWGCWC 1 cut(s) 604
Alw26I GTCTC 2 cut(s) 317, 443
AlwI GGATC 3 cut(s) 190, 203, 365
Aor13HI TCCGGA 1 cut(s) 503
AoxI GGCC 1 cut(s) 524
ApeKI GCWGC 2 cut(s) 158, 161
ApoI RAATTY 2 cut(s) 17, 462
AspLEI GCGC 1 cut(s) 521
AsuHPI GGTGA 1 cut(s) 590
BamHI GGATCC 1 cut(s) 195
Bbv12I GWGCWC 1 cut(s) 604
BbvI GCAGC 2 cut(s) 170, 173
BccI CCATC 3 cut(s) 233, 325, 580
BceAI ACGGC 2 cut(s) 281, 390
BciT130I CCWGG 1 cut(s) 363
BcoDI GTCTC 2 cut(s) 317, 443
BfaI CTAG 1 cut(s) 350
BisI GCNGC 3 cut(s) 156, 159, 162
BlsI GCNGC 3 cut(s) 157, 160, 163
Bme1390I CCNGG 1 cut(s) 363
BmiI GGNNCC 1 cut(s) 197
BmrFI CCNGG 1 cut(s) 363
BmsI GCATC 1 cut(s) 411
BsaHI GRCGYC 1 cut(s) 282
BsaJI CCNNGG 1 cut(s) 361
BsaWI WCCGGW 1 cut(s) 503
BsaXI ACNNNNNCTCC 2 cut(s) 64, 94
Bsc4I CCNNNNNNNGG 1 cut(s) 231
Bse118I RCCGGY 1 cut(s) 118
BseAI TCCGGA 1 cut(s) 503
BseBI CCWGG 1 cut(s) 363
BseDI CCNNGG 1 cut(s) 361
BseGI GGATG 2 cut(s) 221, 426
BseLI CCNNNNNNNGG 1 cut(s) 231
BseMII CTCAG 2 cut(s) 302, 617
BseRI GAGGAG 1 cut(s) 596
BseXI GCAGC 2 cut(s) 170, 173
Bsh1236I CGCG 1 cut(s) 521
BshFI GGCC 1 cut(s) 526
BsiHKAI GWGCWC 1 cut(s) 604
BsiSI CCGG 3 cut(s) 83, 119, 504
BslFI GGGAC 1 cut(s) 344
BslI CCNNNNNNNGG 1 cut(s) 231
BsmAI GTCTC 2 cut(s) 317, 443
BsmFI GGGAC 1 cut(s) 344
BsnI GGCC 1 cut(s) 526
Bsp1286I GDGCHC 1 cut(s) 604
Bsp13I TCCGGA 1 cut(s) 503
Bsp1407I TGTACA 1 cut(s) 247
Bsp143I GATC 5 cut(s) 195, 370, 378, 411, 484
BspACI CCGC 6 cut(s) 153, 156, 492, 513, 545, 576
BspANI GGCC 1 cut(s) 526
BspCNI CTCAG 2 cut(s) 303, 616
BspEI TCCGGA 1 cut(s) 503
BspFNI CGCG 1 cut(s) 521
BspLI GGNNCC 1 cut(s) 197
BspPI GGATC 3 cut(s) 190, 203, 365
BsrFI RCCGGY 1 cut(s) 118
BsrGI TGTACA 1 cut(s) 247
BssAI RCCGGY 1 cut(s) 118
BssECI CCNNGG 1 cut(s) 361
BssMI GATC 5 cut(s) 195, 370, 378, 411, 484
BssNI GRCGYC 1 cut(s) 282
Bst2UI CCWGG 1 cut(s) 363
Bst4CI ACNGT 4 cut(s) 46, 185, 245, 277
Bst6I CTCTTC 1 cut(s) 549
BstACI GRCGYC 1 cut(s) 282
BstAUI TGTACA 1 cut(s) 247
BstDEI CTNAG 3 cut(s) 311, 603, 638
BstF5I GGATG 2 cut(s) 221, 426
BstFNI CGCG 1 cut(s) 521
BstHHI GCGC 1 cut(s) 521
BstKTI GATC 5 cut(s) 198, 373, 381, 414, 487
BstMAI GTCTC 2 cut(s) 317, 443
BstMBI GATC 5 cut(s) 195, 370, 378, 411, 484
BstMWI GCNNNNNNNGC 3 cut(s) 128, 155, 161
BstNI CCWGG 1 cut(s) 363
BstSCI CCNGG 1 cut(s) 361
BstUI CGCG 1 cut(s) 521
BstV1I GCAGC 2 cut(s) 170, 173
BstX2I RGATCY 2 cut(s) 195, 370
BstYI RGATCY 2 cut(s) 195, 370
BsuRI GGCC 1 cut(s) 526
BtgZI GCGATG 1 cut(s) 309
BtsCI GGATG 2 cut(s) 221, 426
CfoI GCGC 1 cut(s) 521
Cfr10I RCCGGY 1 cut(s) 118
CseI GACGC 1 cut(s) 290
Csp6I GTAC 1 cut(s) 248
CviJI RGCY 6 cut(s) 131, 180, 335, 389, 405, 526
CviKI_1 RGCY 6 cut(s) 131, 180, 335, 389, 405, 526
CviQI GTAC 1 cut(s) 248
DdeI CTNAG 3 cut(s) 311, 603, 638
DpnI GATC 5 cut(s) 197, 372, 380, 413, 486
DpnII GATC 5 cut(s) 195, 370, 378, 411, 484
Eam1104I CTCTTC 1 cut(s) 549
EarI CTCTTC 1 cut(s) 549
EciI GGCGGA 1 cut(s) 507
EcoRII CCWGG 1 cut(s) 361
FaiI YATR 5 cut(s) 63, 72, 192, 208, 257
FaqI GGGAC 1 cut(s) 344
FblI GTMKAC 3 cut(s) 29, 279, 498
Fnu4HI GCNGC 3 cut(s) 156, 159, 162
FokI GGATG 2 cut(s) 208, 433
Fsp4HI GCNGC 3 cut(s) 156, 159, 162
FspBI CTAG 1 cut(s) 350
GlaI GCGC 1 cut(s) 520
GluI GCNGC 3 cut(s) 156, 159, 162
HaeIII GGCC 1 cut(s) 526
HapII CCGG 3 cut(s) 83, 119, 504
HgaI GACGC 1 cut(s) 290
HhaI GCGC 1 cut(s) 521
Hin1I GRCGYC 1 cut(s) 282
Hin6I GCGC 1 cut(s) 519
HinP1I GCGC 1 cut(s) 519
HincII GTYRAC 1 cut(s) 30
HindII GTYRAC 1 cut(s) 30
HinfI GANTC 6 cut(s) 169, 325, 353, 437, 500, 594
HpaII CCGG 3 cut(s) 83, 119, 504
HphI GGTGA 1 cut(s) 590
Hpy166II GTNNAC 4 cut(s) 30, 248, 280, 499
Hpy188III TCNNGA 5 cut(s) 12, 100, 233, 504, 628
Hpy8I GTNNAC 4 cut(s) 30, 248, 280, 499
Hpy99I CGWCG 3 cut(s) 31, 127, 379
HpyAV CCTTC 1 cut(s) 295
HpyCH4III ACNGT 4 cut(s) 46, 185, 245, 277
HpyCH4IV ACGT 3 cut(s) 7, 135, 307
HpyCH4V TGCA 1 cut(s) 424
HpyF10VI GCNNNNNNNGC 3 cut(s) 128, 155, 161
HpyF3I CTNAG 3 cut(s) 311, 603, 638
HpySE526I ACGT 3 cut(s) 7, 135, 307
Hsp92I GRCGYC 1 cut(s) 282
HspAI GCGC 1 cut(s) 519
Kpn2I TCCGGA 1 cut(s) 503
Kzo9I GATC 5 cut(s) 195, 370, 378, 411, 484
LpnPI CCDG 8 cut(s) 96, 132, 162, 348, 375, 410, 517, 641
Lsp1109I GCAGC 2 cut(s) 170, 173
LweI GCATC 1 cut(s) 411
MaeI CTAG 1 cut(s) 350
MaeII ACGT 3 cut(s) 7, 135, 307
MalI GATC 5 cut(s) 197, 372, 380, 413, 486
MboI GATC 5 cut(s) 195, 370, 378, 411, 484
MboII GAAGA 2 cut(s) 551, 566
MflI RGATCY 2 cut(s) 195, 370
MhlI GDGCHC 1 cut(s) 604
MluCI AATT 3 cut(s) 17, 462, 475
MlyI GAGTC 3 cut(s) 319, 347, 494
MmeI TCCRAC 2 cut(s) 286, 398
MnlI CCTC 6 cut(s) 90, 159, 387, 544, 566, 574
MroI TCCGGA 1 cut(s) 503
MspI CCGG 3 cut(s) 83, 119, 504
MspR9I CCNGG 1 cut(s) 363
MvaI CCWGG 1 cut(s) 363
MvnI CGCG 1 cut(s) 521
MwoI GCNNNNNNNGC 3 cut(s) 128, 155, 161
NdeII GATC 5 cut(s) 195, 370, 378, 411, 484
NlaIV GGNNCC 1 cut(s) 197
NmeAIII GCCGAG 1 cut(s) 468
PfeI GAWTC 3 cut(s) 169, 437, 594
PflFI GACNNNGTC 1 cut(s) 356
PkrI GCNGC 3 cut(s) 157, 160, 163
PleI GAGTC 3 cut(s) 319, 347, 494
PpsI GAGTC 3 cut(s) 319, 347, 494
Psp1406I AACGTT 1 cut(s) 7
Psp6I CCWGG 1 cut(s) 361
PspGI CCWGG 1 cut(s) 361
PspN4I GGNNCC 1 cut(s) 197
PsuI RGATCY 2 cut(s) 195, 370
PsyI GACNNNGTC 1 cut(s) 356
RsaI GTAC 1 cut(s) 249
RsaNI GTAC 1 cut(s) 248
SalI GTCGAC 1 cut(s) 28
SatI GCNGC 3 cut(s) 156, 159, 162
Sau3AI GATC 5 cut(s) 195, 370, 378, 411, 484
SchI GAGTC 3 cut(s) 319, 347, 494
ScrFI CCNGG 1 cut(s) 363
SduI GDGCHC 1 cut(s) 604
SetI ASST 5 cut(s) 10, 138, 207, 310, 391
SfaNI GCATC 1 cut(s) 411
Sse9I AATT 3 cut(s) 17, 462, 475
SsiI CCGC 6 cut(s) 153, 156, 492, 513, 545, 576
SspMI CTAG 1 cut(s) 350
StyD4I CCNGG 1 cut(s) 361
TaaI ACNGT 4 cut(s) 46, 185, 245, 277
TaiI ACGT 3 cut(s) 10, 138, 310
TaqI TCGA 2 cut(s) 29, 435
TasI AATT 3 cut(s) 17, 462, 475
TatI WGTACW 1 cut(s) 247
TauI GCSGC 1 cut(s) 158
TfiI GAWTC 3 cut(s) 169, 437, 594
TseI GCWGC 2 cut(s) 158, 161
TspDTI ATGAA 2 cut(s) 17, 332
TspGWI ACGGA 1 cut(s) 346
Tth111I GACNNNGTC 1 cut(s) 356
XapI RAATTY 2 cut(s) 17, 462
XmiI GTMKAC 3 cut(s) 29, 279, 498
XspI CTAG 1 cut(s) 350
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.