FvH4_3g01021

BAG family molecular chaperone regulator 5

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0001749
Physical Location & Seq
Reverse (-)
506134 .. 506772
639 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g01021.t1

Sequence Viewer

Length: 639 bp
ATGAAAACTTCTCACCGTCCCAGACTCGGCTTCTCCTCCTCTTCCACCACCACCACCGTCACCTACACTCTCCGTAATGACCAACCTGCCCCTCCCACCTCCACCCAAATCCCCATTCAGTCCTCCGAAACCCCGATTCCGATCACCGTACATGTTCCTCAGTCCGCCGCCGCCGTCAAAATCCAGTCGGCCTACCGGAGCCACTTGATCCGCAACCTCTACAAGACAATCGCGGCCGTCCATTCCGAGGCCGACGAGTTCCAGCGCCTGATCCAACGGCAGGAGACAGTCGACGCCGTGAGGAGCAGCGAGCGCGAGAAGCTGAGGATGAACGAGGCGCTGATGAAGCTGCTGCTGAAGCTGGACTCGGTTCCCGGGGTGGACCCCGCGGTGAGGGAGGCGAGGAGGAAGGTGAGCCGTCGGATCGTGGGGCTGCAGGAGATTTTGGACGCGATTGTTCAGGTAGACGTGGACGGGTTCTGGGGGTGCGGCGGTGGGTTTGGGAGGGACTACTGGAACGACGTCGTGGCGGAGATGGAGGAGGGGGTGTGTAGGGAGAGAGGAGGTGAGGAAATGGAGAGGTTTTGTGCTGAGCATTTGGGGTTTCGTTGCTTACAGAGGTTTCTTAGTCAGCCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005911 GO:0006457 GO:0008150 GO:0009266 GO:0009506 GO:0009605 GO:0009607 GO:0009628 GO:0009987 GO:0030054 GO:0043207 GO:0050896 GO:0055044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BAG IQ

Protein Analysis

213

Amino Acids

23.85

Weight (kDa)

7.72

Isoelectric Point (pI)

49.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BAG PF02179 77 - 151 7.3e-16 BAG domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 525
Acc36I ACCTGC 1 cut(s) 94
AccI GTMKAC 2 cut(s) 291, 465
AccII CGCG 4 cut(s) 233, 315, 389, 452
AclWI GGATC 3 cut(s) 202, 265, 431
AcoI YGGCCR 1 cut(s) 234
AcuI CTGAAG 1 cut(s) 377
AcyI GRCGYC 2 cut(s) 294, 522
AfaI GTAC 1 cut(s) 150
AfiI CCNNNNNNNGG 4 cut(s) 26, 247, 280, 393
AflIII ACRYGT 1 cut(s) 151
AjiI CACGTC 1 cut(s) 469
AjuI GAANNNNNNNTTGG 2 cut(s) 99, 131
AluBI AGCT 3 cut(s) 322, 349, 361
AluI AGCT 3 cut(s) 322, 349, 361
Alw26I GTCTC 1 cut(s) 278
AlwI GGATC 3 cut(s) 202, 265, 431
AlwNI CAGNNNCTG 1 cut(s) 268
Ama87I CYCGRG 1 cut(s) 374
AoxI GGCC 3 cut(s) 189, 234, 249
ApeKI GCWGC 4 cut(s) 306, 349, 352, 433
AspLEI GCGC 3 cut(s) 267, 315, 340
AspS9I GGNCC 1 cut(s) 382
AsuC2I CCSGG 2 cut(s) 375, 376
AsuHPI GGTGA 6 cut(s) 5, 52, 136, 403, 424, 578
AvaI CYCGRG 1 cut(s) 374
AvaII GGWCC 1 cut(s) 382
BbvCI CCTCAGC 1 cut(s) 323
BbvI GCAGC 4 cut(s) 318, 336, 339, 420
BccI CCATC 1 cut(s) 529
BceAI ACGGC 5 cut(s) 158, 221, 281, 293, 402
BcnI CCSGG 2 cut(s) 375, 376
BcoDI GTCTC 1 cut(s) 278
BfmI CTRYAG 1 cut(s) 434
BfoI RGCGCY 2 cut(s) 268, 341
BfuAI ACCTGC 1 cut(s) 94
BisI GCNGC 8 cut(s) 168, 171, 234, 307, 350, 353, 434, 490
BlpI GCTNAGC 1 cut(s) 591
BlsI GCNGC 8 cut(s) 169, 172, 235, 308, 351, 354, 435, 491
Bme1390I CCNGG 2 cut(s) 375, 376
Bme18I GGWCC 1 cut(s) 382
BmeT110I CYCGRG 1 cut(s) 374
BmgBI CACGTC 1 cut(s) 469
BmgT120I GGNCC 1 cut(s) 382
BmiI GGNNCC 3 cut(s) 200, 372, 384
BmrFI CCNGG 2 cut(s) 375, 376
Bpu10I CCTNAGC 1 cut(s) 323
Bpu1102I GCTNAGC 1 cut(s) 591
BpuMI CCSGG 2 cut(s) 375, 376
BsaBI GATNNNNATC 1 cut(s) 140
BsaHI GRCGYC 2 cut(s) 294, 522
BsaJI CCNNGG 4 cut(s) 246, 374, 375, 387
BsaWI WCCGGW 1 cut(s) 195
BsaXI ACNNNNNCTCC 2 cut(s) 533, 563
Bsc4I CCNNNNNNNGG 4 cut(s) 26, 247, 280, 393
Bse1I ACTGG 2 cut(s) 184, 518
Bse8I GATNNNNATC 1 cut(s) 140
BseDI CCNNGG 4 cut(s) 246, 374, 375, 387
BseGI GGATG 1 cut(s) 333
BseJI GATNNNNATC 1 cut(s) 140
BseLI CCNNNNNNNGG 4 cut(s) 26, 247, 280, 393
BseMII CTCAG 3 cut(s) 173, 314, 582
BseNI ACTGG 2 cut(s) 184, 518
BseRI GAGGAG 6 cut(s) 25, 28, 316, 418, 554, 576
BseX3I CGGCCG 1 cut(s) 234
BseXI GCAGC 4 cut(s) 318, 336, 339, 420
Bsh1236I CGCG 4 cut(s) 233, 315, 389, 452
Bsh1285I CGRYCG 1 cut(s) 237
BshFI GGCC 3 cut(s) 191, 236, 251
BsiEI CGRYCG 1 cut(s) 237
BsiHKCI CYCGRG 1 cut(s) 374
BsiSI CCGG 2 cut(s) 196, 375
BslFI GGGAC 2 cut(s) 3, 521
BslI CCNNNNNNNGG 4 cut(s) 26, 247, 280, 393
BsmAI GTCTC 1 cut(s) 278
BsmFI GGGAC 2 cut(s) 3, 521
BsnI GGCC 3 cut(s) 191, 236, 251
BsoBI CYCGRG 1 cut(s) 374
Bsp143I GATC 4 cut(s) 141, 207, 270, 423
Bsp1720I GCTNAGC 1 cut(s) 591
BspANI GGCC 3 cut(s) 191, 236, 251
BspCNI CTCAG 3 cut(s) 172, 315, 583
BspFNI CGCG 4 cut(s) 233, 315, 389, 452
BspLI GGNNCC 3 cut(s) 200, 372, 384
BspMAI CTGCAG 1 cut(s) 438
BspMI ACCTGC 1 cut(s) 94
BspPI GGATC 3 cut(s) 202, 265, 431
BsrI ACTGG 2 cut(s) 184, 518
BssECI CCNNGG 4 cut(s) 246, 374, 375, 387
BssMI GATC 4 cut(s) 141, 207, 270, 423
BssNI GRCGYC 2 cut(s) 294, 522
Bst4CI ACNGT 4 cut(s) 17, 58, 148, 289
Bst6I CTCTTC 1 cut(s) 46
BstACI GRCGYC 2 cut(s) 294, 522
BstC8I GCNNGC 1 cut(s) 311
BstDEI CTNAG 4 cut(s) 159, 323, 591, 626
BstDSI CCRYGG 1 cut(s) 387
BstF5I GGATG 1 cut(s) 333
BstFNI CGCG 4 cut(s) 233, 315, 389, 452
BstH2I RGCGCY 2 cut(s) 268, 341
BstHHI GCGC 3 cut(s) 267, 315, 340
BstKTI GATC 4 cut(s) 144, 210, 273, 426
BstMAI GTCTC 1 cut(s) 278
BstMBI GATC 4 cut(s) 141, 207, 270, 423
BstMCI CGRYCG 1 cut(s) 237
BstMWI GCNNNNNNNGC 4 cut(s) 312, 319, 346, 358
BstNSI RCATGY 1 cut(s) 155
BstSCI CCNGG 2 cut(s) 373, 374
BstSFI CTRYAG 1 cut(s) 434
BstUI CGCG 4 cut(s) 233, 315, 389, 452
BstV1I GCAGC 4 cut(s) 318, 336, 339, 420
BstZI CGGCCG 1 cut(s) 234
BsuRI GGCC 3 cut(s) 191, 236, 251
BtgI CCRYGG 1 cut(s) 387
BtrI CACGTC 1 cut(s) 469
BtsCI GGATG 1 cut(s) 333
BveI ACCTGC 1 cut(s) 94
Cac8I GCNNGC 1 cut(s) 311
CaiI CAGNNNCTG 1 cut(s) 268
CfoI GCGC 3 cut(s) 267, 315, 340
Cfr13I GGNCC 1 cut(s) 382
Cfr42I CCGCGG 1 cut(s) 390
Cfr9I CCCGGG 1 cut(s) 374
CseI GACGC 2 cut(s) 302, 458
Csp6I GTAC 1 cut(s) 149
CviAII CATG 1 cut(s) 152
CviQI GTAC 1 cut(s) 149
DdeI CTNAG 4 cut(s) 159, 323, 591, 626
DpnI GATC 4 cut(s) 143, 209, 272, 425
DpnII GATC 4 cut(s) 141, 207, 270, 423
EaeI YGGCCR 1 cut(s) 234
EagI CGGCCG 1 cut(s) 234
Eam1104I CTCTTC 1 cut(s) 46
EarI CTCTTC 1 cut(s) 46
EciI GGCGGA 2 cut(s) 154, 545
EclXI CGGCCG 1 cut(s) 234
Eco47I GGWCC 1 cut(s) 382
Eco52I CGGCCG 1 cut(s) 234
Eco57I CTGAAG 1 cut(s) 377
Eco88I CYCGRG 1 cut(s) 374
FaeI CATG 1 cut(s) 155
FaiI YATR 1 cut(s) 153
FaqI GGGAC 2 cut(s) 3, 521
FatI CATG 1 cut(s) 151
FauI CCCGC 1 cut(s) 394
FblI GTMKAC 2 cut(s) 291, 465
Fnu4HI GCNGC 8 cut(s) 168, 171, 234, 307, 350, 353, 434, 490
FokI GGATG 1 cut(s) 340
Fsp4HI GCNGC 8 cut(s) 168, 171, 234, 307, 350, 353, 434, 490
GlaI GCGC 3 cut(s) 266, 314, 339
GluI GCNGC 8 cut(s) 168, 171, 234, 307, 350, 353, 434, 490
HaeII RGCGCY 2 cut(s) 268, 341
HaeIII GGCC 3 cut(s) 191, 236, 251
HapII CCGG 2 cut(s) 196, 375
HgaI GACGC 2 cut(s) 302, 458
HhaI GCGC 3 cut(s) 267, 315, 340
Hin1I GRCGYC 2 cut(s) 294, 522
Hin1II CATG 1 cut(s) 155
Hin6I GCGC 3 cut(s) 265, 313, 338
HinP1I GCGC 3 cut(s) 265, 313, 338
HincII GTYRAC 1 cut(s) 292
HindII GTYRAC 1 cut(s) 292
HinfI GANTC 3 cut(s) 24, 136, 365
HpaII CCGG 2 cut(s) 196, 375
HphI GGTGA 6 cut(s) 5, 52, 136, 403, 424, 578
Hpy166II GTNNAC 4 cut(s) 292, 382, 466, 472
Hpy188I TCNGA 4 cut(s) 127, 141, 247, 423
Hpy8I GTNNAC 4 cut(s) 292, 382, 466, 472
Hpy99I CGWCG 5 cut(s) 257, 296, 423, 524, 527
HpyAV CCTTC 1 cut(s) 403
HpyCH4III ACNGT 4 cut(s) 17, 58, 148, 289
HpyCH4IV ACGT 2 cut(s) 468, 522
HpyCH4V TGCA 1 cut(s) 436
HpyF10VI GCNNNNNNNGC 4 cut(s) 312, 319, 346, 358
HpyF3I CTNAG 4 cut(s) 159, 323, 591, 626
HpySE526I ACGT 2 cut(s) 468, 522
Hsp92I GRCGYC 2 cut(s) 294, 522
Hsp92II CATG 1 cut(s) 155
HspAI GCGC 3 cut(s) 265, 313, 338
KspI CCGCGG 1 cut(s) 390
Kzo9I GATC 4 cut(s) 141, 207, 270, 423
LmnI GCTCC 2 cut(s) 198, 303
Lsp1109I GCAGC 4 cut(s) 318, 336, 339, 420
MaeII ACGT 2 cut(s) 468, 522
MaeIII GTNAC 1 cut(s) 58
MalI GATC 4 cut(s) 143, 209, 272, 425
MboI GATC 4 cut(s) 141, 207, 270, 423
MboII GAAGA 1 cut(s) 33
MlyI GAGTC 2 cut(s) 18, 359
MmeI TCCRAC 2 cut(s) 298, 401
MspA1I CMGCKG 1 cut(s) 389
MspI CCGG 2 cut(s) 196, 375
MspR9I CCNGG 2 cut(s) 375, 376
MvnI CGCG 4 cut(s) 233, 315, 389, 452
MwoI GCNNNNNNNGC 4 cut(s) 312, 319, 346, 358
NciI CCSGG 2 cut(s) 375, 376
NdeII GATC 4 cut(s) 141, 207, 270, 423
NlaIII CATG 1 cut(s) 155
NlaIV GGNNCC 3 cut(s) 200, 372, 384
NmeAIII GCCGAG 1 cut(s) 6
NmuCI GTSAC 1 cut(s) 58
NspI RCATGY 1 cut(s) 155
PciI ACATGT 1 cut(s) 151
PfeI GAWTC 1 cut(s) 136
PkrI GCNGC 8 cut(s) 169, 172, 235, 308, 351, 354, 435, 491
PleI GAGTC 2 cut(s) 18, 359
PpsI GAGTC 2 cut(s) 18, 359
PscI ACATGT 1 cut(s) 151
PspN4I GGNNCC 3 cut(s) 200, 372, 384
PspPI GGNCC 1 cut(s) 382
PstI CTGCAG 1 cut(s) 438
PstNI CAGNNNCTG 1 cut(s) 268
RsaI GTAC 1 cut(s) 150
RsaNI GTAC 1 cut(s) 149
SacII CCGCGG 1 cut(s) 390
SalI GTCGAC 1 cut(s) 290
SatI GCNGC 8 cut(s) 168, 171, 234, 307, 350, 353, 434, 490
Sau3AI GATC 4 cut(s) 141, 207, 270, 423
Sau96I GGNCC 1 cut(s) 382
SchI GAGTC 2 cut(s) 18, 359
ScrFI CCNGG 2 cut(s) 375, 376
SfcI CTRYAG 1 cut(s) 434
Sfr303I CCGCGG 1 cut(s) 390
SgrBI CCGCGG 1 cut(s) 390
SinI GGWCC 1 cut(s) 382
SmaI CCCGGG 1 cut(s) 376
StyD4I CCNGG 2 cut(s) 373, 374
TaaI ACNGT 4 cut(s) 17, 58, 148, 289
TaiI ACGT 2 cut(s) 471, 525
TaqI TCGA 1 cut(s) 291
TauI GCSGC 4 cut(s) 170, 173, 236, 492
TfiI GAWTC 1 cut(s) 136
TseFI GTSAC 1 cut(s) 58
TseI GCWGC 4 cut(s) 306, 349, 352, 433
Tsp45I GTSAC 1 cut(s) 58
TspDTI ATGAA 3 cut(s) 17, 344, 359
TspGWI ACGGA 1 cut(s) 62
TspMI CCCGGG 1 cut(s) 374
VpaK11BI GGWCC 1 cut(s) 382
XceI RCATGY 1 cut(s) 155
XmaI CCCGGG 1 cut(s) 374
XmiI GTMKAC 2 cut(s) 291, 465
ZraI GACGTC 1 cut(s) 523
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.