RchiOBHm_Chr4g0386881

BAG family molecular chaperone regulator 5

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0001749
Physical Location & Seq
Forward (+)
2252639 .. 2252992
354 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ36022

Sequence Viewer

Length: 354 bp
ATGGTTTGCGACCTCTACAAGACAATCGCGGCCGTCCATTCCGAGGCCGACGAGTTCCAGCGCCTGATCCAACGACAGGAGACGGTCGACGCCGTGAGGAGCAGCGTGTGGGAGAAGCTGAGGATGAACGAGGCGCTGATGAAGTTGCTACTGAGTTTGGACTCTGTGCCCGGGGTGGACCCCACGATGAGGGAGGCAAGGAGGAAGGTGAGTCGTCGGATCGTGGGGCTGCAGGAGATCGTGGACGCGATTGTTCAGGAAGACGTGGAGGGGTTCTGGGGTGGGTGCGGCGGCGGGTTTGGGAGGGACTACTGGAACGACGTCGTGGCGAAGATGGAGGAGGGGGTGGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005911 GO:0006457 GO:0008150 GO:0009266 GO:0009506 GO:0009605 GO:0009607 GO:0009628 GO:0009987 GO:0030054 GO:0043207 GO:0050896 GO:0055044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BAG IQ

Protein Analysis

117

Amino Acids

13.2

Weight (kDa)

4.89

Isoelectric Point (pI)

45.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BAG PF02179 9 - 83 2.2e-14 BAG domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 324
AccI GTMKAC 1 cut(s) 87
AccII CGCG 2 cut(s) 29, 248
AciI CCGC 4 cut(s) 29, 288, 291, 294
AclWI GGATC 2 cut(s) 61, 227
AcoI YGGCCR 1 cut(s) 30
AcyI GRCGYC 2 cut(s) 90, 321
AfiI CCNNNNNNNGG 3 cut(s) 43, 76, 189
AjiI CACGTC 1 cut(s) 265
AluBI AGCT 1 cut(s) 118
AluI AGCT 1 cut(s) 118
Alw26I GTCTC 1 cut(s) 74
AlwI GGATC 2 cut(s) 61, 227
AlwNI CAGNNNCTG 1 cut(s) 64
Ama87I CYCGRG 1 cut(s) 170
AoxI GGCC 2 cut(s) 30, 45
ApeKI GCWGC 2 cut(s) 102, 229
AspLEI GCGC 2 cut(s) 63, 136
AspS9I GGNCC 1 cut(s) 178
AsuC2I CCSGG 2 cut(s) 171, 172
AsuHPI GGTGA 1 cut(s) 220
AvaI CYCGRG 1 cut(s) 170
AvaII GGWCC 1 cut(s) 178
BaeGI GKGCMC 1 cut(s) 171
BbsI GAAGAC 1 cut(s) 267
BbvCI CCTCAGC 1 cut(s) 119
BbvI GCAGC 2 cut(s) 114, 216
BccI CCATC 1 cut(s) 328
BceAI ACGGC 2 cut(s) 17, 77
BcnI CCSGG 2 cut(s) 171, 172
BcoDI GTCTC 1 cut(s) 74
BfmI CTRYAG 1 cut(s) 230
BfoI RGCGCY 2 cut(s) 64, 137
BisI GCNGC 5 cut(s) 30, 103, 230, 289, 292
BlsI GCNGC 5 cut(s) 31, 104, 231, 290, 293
Bme1390I CCNGG 2 cut(s) 171, 172
Bme18I GGWCC 1 cut(s) 178
BmeT110I CYCGRG 1 cut(s) 170
BmgBI CACGTC 1 cut(s) 265
BmgT120I GGNCC 1 cut(s) 178
BmiI GGNNCC 1 cut(s) 180
BmrFI CCNGG 2 cut(s) 171, 172
BpiI GAAGAC 1 cut(s) 267
Bpu10I CCTNAGC 1 cut(s) 119
BpuMI CCSGG 2 cut(s) 171, 172
BsaHI GRCGYC 2 cut(s) 90, 321
BsaJI CCNNGG 3 cut(s) 42, 170, 171
Bsc4I CCNNNNNNNGG 3 cut(s) 43, 76, 189
Bse1I ACTGG 1 cut(s) 317
BseDI CCNNGG 3 cut(s) 42, 170, 171
BseGI GGATG 1 cut(s) 129
BseLI CCNNNNNNNGG 3 cut(s) 43, 76, 189
BseMII CTCAG 2 cut(s) 110, 143
BseNI ACTGG 1 cut(s) 317
BseRI GAGGAG 2 cut(s) 112, 353
BseSI GKGCMC 1 cut(s) 171
BseX3I CGGCCG 1 cut(s) 30
BseXI GCAGC 2 cut(s) 114, 216
Bsh1236I CGCG 2 cut(s) 29, 248
Bsh1285I CGRYCG 2 cut(s) 33, 87
BshFI GGCC 2 cut(s) 32, 47
BsiEI CGRYCG 2 cut(s) 33, 87
BsiHKCI CYCGRG 1 cut(s) 170
BsiSI CCGG 1 cut(s) 171
BslFI GGGAC 1 cut(s) 320
BslI CCNNNNNNNGG 3 cut(s) 43, 76, 189
BsmAI GTCTC 1 cut(s) 74
BsmBI CGTCTC 1 cut(s) 74
BsmFI GGGAC 1 cut(s) 320
BsnI GGCC 2 cut(s) 32, 47
BsoBI CYCGRG 1 cut(s) 170
Bsp1286I GDGCHC 1 cut(s) 171
Bsp143I GATC 3 cut(s) 66, 219, 237
BspACI CCGC 4 cut(s) 29, 288, 291, 294
BspANI GGCC 2 cut(s) 32, 47
BspCNI CTCAG 2 cut(s) 111, 144
BspFNI CGCG 2 cut(s) 29, 248
BspLI GGNNCC 1 cut(s) 180
BspMAI CTGCAG 1 cut(s) 234
BspPI GGATC 2 cut(s) 61, 227
BsrI ACTGG 1 cut(s) 317
BssECI CCNNGG 3 cut(s) 42, 170, 171
BssMI GATC 3 cut(s) 66, 219, 237
BssNI GRCGYC 2 cut(s) 90, 321
Bst4CI ACNGT 1 cut(s) 85
BstACI GRCGYC 2 cut(s) 90, 321
BstDEI CTNAG 2 cut(s) 119, 152
BstF5I GGATG 1 cut(s) 129
BstFNI CGCG 2 cut(s) 29, 248
BstH2I RGCGCY 2 cut(s) 64, 137
BstHHI GCGC 2 cut(s) 63, 136
BstKTI GATC 3 cut(s) 69, 222, 240
BstMAI GTCTC 1 cut(s) 74
BstMBI GATC 3 cut(s) 66, 219, 237
BstMCI CGRYCG 2 cut(s) 33, 87
BstSCI CCNGG 2 cut(s) 169, 170
BstSFI CTRYAG 1 cut(s) 230
BstSLI GKGCMC 1 cut(s) 171
BstUI CGCG 2 cut(s) 29, 248
BstV1I GCAGC 2 cut(s) 114, 216
BstV2I GAAGAC 1 cut(s) 267
BstZI CGGCCG 1 cut(s) 30
BsuRI GGCC 2 cut(s) 32, 47
BtrI CACGTC 1 cut(s) 265
BtsCI GGATG 1 cut(s) 129
CaiI CAGNNNCTG 1 cut(s) 64
CfoI GCGC 2 cut(s) 63, 136
Cfr13I GGNCC 1 cut(s) 178
Cfr9I CCCGGG 1 cut(s) 170
CseI GACGC 2 cut(s) 98, 254
CviJI RGCY 4 cut(s) 32, 47, 118, 229
CviKI_1 RGCY 4 cut(s) 32, 47, 118, 229
DdeI CTNAG 2 cut(s) 119, 152
DpnI GATC 3 cut(s) 68, 221, 239
DpnII GATC 3 cut(s) 66, 219, 237
EaeI YGGCCR 1 cut(s) 30
EagI CGGCCG 1 cut(s) 30
EclXI CGGCCG 1 cut(s) 30
Eco47I GGWCC 1 cut(s) 178
Eco52I CGGCCG 1 cut(s) 30
Eco88I CYCGRG 1 cut(s) 170
Esp3I CGTCTC 1 cut(s) 74
FaqI GGGAC 1 cut(s) 320
FauI CCCGC 1 cut(s) 287
FblI GTMKAC 1 cut(s) 87
Fnu4HI GCNGC 5 cut(s) 30, 103, 230, 289, 292
FokI GGATG 1 cut(s) 136
Fsp4HI GCNGC 5 cut(s) 30, 103, 230, 289, 292
GlaI GCGC 2 cut(s) 62, 135
GluI GCNGC 5 cut(s) 30, 103, 230, 289, 292
HaeII RGCGCY 2 cut(s) 64, 137
HaeIII GGCC 2 cut(s) 32, 47
HapII CCGG 1 cut(s) 171
HgaI GACGC 2 cut(s) 98, 254
HhaI GCGC 2 cut(s) 63, 136
Hin1I GRCGYC 2 cut(s) 90, 321
Hin6I GCGC 2 cut(s) 61, 134
HinP1I GCGC 2 cut(s) 61, 134
HincII GTYRAC 1 cut(s) 88
HindII GTYRAC 1 cut(s) 88
HinfI GANTC 2 cut(s) 161, 211
HpaII CCGG 1 cut(s) 171
HphI GGTGA 1 cut(s) 220
Hpy166II GTNNAC 3 cut(s) 88, 178, 244
Hpy188I TCNGA 2 cut(s) 43, 219
Hpy188III TCNNGA 1 cut(s) 257
Hpy8I GTNNAC 3 cut(s) 88, 178, 244
Hpy99I CGWCG 5 cut(s) 53, 92, 219, 323, 326
HpyAV CCTTC 1 cut(s) 199
HpyCH4III ACNGT 1 cut(s) 85
HpyCH4IV ACGT 2 cut(s) 264, 321
HpyCH4V TGCA 1 cut(s) 232
HpyF3I CTNAG 2 cut(s) 119, 152
HpySE526I ACGT 2 cut(s) 264, 321
Hsp92I GRCGYC 2 cut(s) 90, 321
HspAI GCGC 2 cut(s) 61, 134
Kzo9I GATC 3 cut(s) 66, 219, 237
LmnI GCTCC 1 cut(s) 99
LpnPI CCDG 8 cut(s) 62, 71, 77, 184, 218, 242, 262, 298
Lsp1109I GCAGC 2 cut(s) 114, 216
MaeII ACGT 2 cut(s) 264, 321
MalI GATC 3 cut(s) 68, 221, 239
MboI GATC 3 cut(s) 66, 219, 237
MboII GAAGA 2 cut(s) 272, 343
MhlI GDGCHC 1 cut(s) 171
MlyI GAGTC 2 cut(s) 155, 220
MmeI TCCRAC 2 cut(s) 94, 197
MspI CCGG 1 cut(s) 171
MspR9I CCNGG 2 cut(s) 171, 172
MvnI CGCG 2 cut(s) 29, 248
NciI CCSGG 2 cut(s) 171, 172
NdeII GATC 3 cut(s) 66, 219, 237
NlaIV GGNNCC 1 cut(s) 180
PkrI GCNGC 5 cut(s) 31, 104, 231, 290, 293
PleI GAGTC 2 cut(s) 155, 219
PpsI GAGTC 2 cut(s) 155, 219
PspN4I GGNNCC 1 cut(s) 180
PspPI GGNCC 1 cut(s) 178
PstI CTGCAG 1 cut(s) 234
PstNI CAGNNNCTG 1 cut(s) 64
SalI GTCGAC 1 cut(s) 86
SatI GCNGC 5 cut(s) 30, 103, 230, 289, 292
Sau3AI GATC 3 cut(s) 66, 219, 237
Sau96I GGNCC 1 cut(s) 178
SchI GAGTC 2 cut(s) 155, 220
ScrFI CCNGG 2 cut(s) 171, 172
SduI GDGCHC 1 cut(s) 171
SetI ASST 5 cut(s) 15, 120, 210, 267, 324
SfcI CTRYAG 1 cut(s) 230
SinI GGWCC 1 cut(s) 178
SmaI CCCGGG 1 cut(s) 172
SsiI CCGC 4 cut(s) 29, 288, 291, 294
StyD4I CCNGG 2 cut(s) 169, 170
TaaI ACNGT 1 cut(s) 85
TaiI ACGT 2 cut(s) 267, 324
TaqI TCGA 1 cut(s) 87
TauI GCSGC 3 cut(s) 32, 291, 294
TseI GCWGC 2 cut(s) 102, 229
TspDTI ATGAA 2 cut(s) 140, 155
TspMI CCCGGG 1 cut(s) 170
VpaK11BI GGWCC 1 cut(s) 178
XmaI CCCGGG 1 cut(s) 170
XmiI GTMKAC 1 cut(s) 87
ZraI GACGTC 1 cut(s) 322
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.