Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0001749

Physical Location & Seq

Genomic Coordinates Forward (+)

26194551 .. 26194823

Gene Structure 273 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1215100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

ATGAACGAGTCCCTGATGCAACTGCTGCTGAAGCTGGACTCGGACCCCGCGGTGAGGGAAGCGAGGAGAAAGGTGAGTCGTCGGATCGTGGGGCTGCAGAAGATCGTGGACGCAATCGTATCGGAAGACATGGATGGCTTCTGGGGTGGCAGAGACGGTGGGTTTGGGAGGAACTGGGACGACGTCCTTGCGGAGATGAAGGAGGAGGCGTGCAGGGACAAAGGAGGGGAAGAGATGGAGAGGTTTTGCGCTCAGTATATGGGGTTTTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004334 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006570 GO:0006572 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008219 GO:0009056 GO:0009063 GO:0009072 GO:0009074 GO:0009987 GO:0016054 GO:0016787 GO:0016822 GO:0016823 GO:0018958 GO:0019336 GO:0019439 GO:0019752 GO:0032787 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0071704 GO:0072329 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606 GO:1901615 GO:1901616 GO:1901999 GO:1902000

KEGG Pathways

Metabolic & Signaling

ko00350 ko00643 ko01100 ko01120 map00350 map00643 map01100 map01120

Pfam Domains

Protein Families

FAA_hydrolase FAA_hydrolase_N

Protein Analysis

91

Amino Acids

10.31

Weight (kDa)

4.83

Isoelectric Point (pI)

45.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BAG	PF02179	2 - 38	5e-07	BAG domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001749)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12060
fragaria_vesca	FvH4_3g01021 FvH4_4g23260
malus_domestica	MD07G1178100.v1.1 MD09G1110100.v1.1 MD10G1331200.v1.1 MD13G1123300.v1.1 MD14G1100700.v1.1 MD16G1124100.v1.1 MD17G1165100.v1.1 MD17G1215100.v1.1
prunus_persica	Prupe.1G221500_v2.0.a1 Prupe.4G011000_v2.0.a1
pyrus_communis	pycom10g28070 pycom13g10770
rosa_chinensis	RchiOBHm_Chr4g0386881 RchiOBHm_Chr4g0429621 RchiOBHm_Chr5g0001561 RchiOBHm_Chr6g0263021 RchiOBHm_Chr6g0277501 RchiOBHm_Chr7g0203061
rosa_laevigata	RLG00000007057 RLG00000030937
rosa_multiflora	Rmu_sc0002035.1_g000006 Rmu_sc0003749.1_g000004 Rmu_sc0005710.1_g000004 Rmu_sc0006320.1_g000012 Rmu_sc0006590.1_g000012 Rmu_sc0006801.1_g000006
rosa_roxburghii	Rroxscaffold_3G00244040 Rroxscaffold_5G00371310
rosa_rugosa	Rorug02G0423000 Rorug04G0237400.1 Rorug04G0391100
rosa_samantha	Rh2BG016000 Rh4AG293300 Rh4BG299000 Rh4CG314600 Rh4DG295900 Rh5CG013200 Rh5DG012500 Rh6AG283300 Rh6DG216300 Rh7BG238800 Rh7CG246300
rosa_wichuraiana	Rw5G001160 Rw5G035200 Rw6G024410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	186
AccII	CGCG	1 cut(s)	50
AciI	CCGC	3 cut(s)	48, 50, 191
AclWI	GGATC	1 cut(s)	92
AcuI	CTGAAG	1 cut(s)	50
AcyI	GRCGYC	1 cut(s)	183
AfiI	CCNNNNNNNGG	1 cut(s)	54
AluBI	AGCT	1 cut(s)	34
AluI	AGCT	1 cut(s)	34
Alw26I	GTCTC	1 cut(s)	147
AlwI	GGATC	1 cut(s)	92
ApeKI	GCWGC	2 cut(s)	25, 94
ArsI	GACNNNNNNTTYG	2 cut(s)	146, 178
AspLEI	GCGC	1 cut(s)	251
AspS9I	GGNCC	1 cut(s)	43
AsuHPI	GGTGA	2 cut(s)	64, 85
AvaII	GGWCC	1 cut(s)	43
BbsI	GAAGAC	1 cut(s)	132
BbvI	GCAGC	2 cut(s)	12, 81
BccI	CCATC	2 cut(s)	128, 229
BcgI	CGANNNNNNTGC	4 cut(s)	102, 136, 170, 204
BcoDI	GTCTC	1 cut(s)	147
BfaI	CTAG	1 cut(s)	271
BfmI	CTRYAG	1 cut(s)	95
BisI	GCNGC	2 cut(s)	26, 95
BlsI	GCNGC	2 cut(s)	27, 96
Bme18I	GGWCC	1 cut(s)	43
BmgT120I	GGNCC	1 cut(s)	43
BmiI	GGNNCC	1 cut(s)	45
BmrI	ACTGGG	1 cut(s)	184
BmsI	GCATC	1 cut(s)	6
BmuI	ACTGGG	1 cut(s)	184
BpiI	GAAGAC	1 cut(s)	132
BsaHI	GRCGYC	1 cut(s)	183
BsaJI	CCNNGG	1 cut(s)	48
BsaXI	ACNNNNNCTCC	2 cut(s)	194, 224
Bsc4I	CCNNNNNNNGG	1 cut(s)	54
Bse1I	ACTGG	1 cut(s)	179
BseDI	CCNNGG	1 cut(s)	48
BseGI	GGATG	1 cut(s)	139
BseLI	CCNNNNNNNGG	1 cut(s)	54
BseMII	CTCAG	1 cut(s)	266
BseNI	ACTGG	1 cut(s)	179
BseRI	GAGGAG	2 cut(s)	79, 218
BseXI	GCAGC	2 cut(s)	12, 81
BsgI	GTGCAG	1 cut(s)	232
Bsh1236I	CGCG	1 cut(s)	50
BslFI	GGGAC	2 cut(s)	191, 230
BslI	CCNNNNNNNGG	1 cut(s)	54
BsmAI	GTCTC	1 cut(s)	147
BsmBI	CGTCTC	1 cut(s)	147
BsmFI	GGGAC	2 cut(s)	191, 230
Bsp143I	GATC	2 cut(s)	84, 102
BspACI	CCGC	3 cut(s)	48, 50, 191
BspCNI	CTCAG	1 cut(s)	265
BspFNI	CGCG	1 cut(s)	50
BspLI	GGNNCC	1 cut(s)	45
BspMAI	CTGCAG	1 cut(s)	99
BspPI	GGATC	1 cut(s)	92
BsrI	ACTGG	1 cut(s)	179
BssECI	CCNNGG	1 cut(s)	48
BssMI	GATC	2 cut(s)	84, 102
BssNI	GRCGYC	1 cut(s)	183
Bst4CI	ACNGT	1 cut(s)	158
Bst6I	CTCTTC	1 cut(s)	225
BstACI	GRCGYC	1 cut(s)	183
BstAPI	GCANNNNNTGC	1 cut(s)	25
BstC8I	GCNNGC	1 cut(s)	211
BstDEI	CTNAG	1 cut(s)	252
BstDSI	CCRYGG	1 cut(s)	48
BstF5I	GGATG	1 cut(s)	139
BstFNI	CGCG	1 cut(s)	50
BstHHI	GCGC	1 cut(s)	251
BstKTI	GATC	2 cut(s)	87, 105
BstMAI	GTCTC	1 cut(s)	147
BstMBI	GATC	2 cut(s)	84, 102
BstMWI	GCNNNNNNNGC	2 cut(s)	25, 31
BstSFI	CTRYAG	1 cut(s)	95
BstUI	CGCG	1 cut(s)	50
BstV1I	GCAGC	2 cut(s)	12, 81
BstV2I	GAAGAC	1 cut(s)	132
BtgI	CCRYGG	1 cut(s)	48
BtsCI	GGATG	1 cut(s)	139
Cac8I	GCNNGC	1 cut(s)	211
CfoI	GCGC	1 cut(s)	251
Cfr13I	GGNCC	1 cut(s)	43
Cfr42I	CCGCGG	1 cut(s)	51
CseI	GACGC	1 cut(s)	119
CviAII	CATG	1 cut(s)	130
CviJI	RGCY	3 cut(s)	34, 94, 138
CviKI_1	RGCY	3 cut(s)	34, 94, 138
DdeI	CTNAG	1 cut(s)	252
DpnI	GATC	2 cut(s)	86, 104
DpnII	GATC	2 cut(s)	84, 102
Eam1104I	CTCTTC	1 cut(s)	225
EarI	CTCTTC	1 cut(s)	225
Eco47I	GGWCC	1 cut(s)	43
Eco57I	CTGAAG	1 cut(s)	50
Esp3I	CGTCTC	1 cut(s)	147
FaeI	CATG	1 cut(s)	133
FaiI	YATR	3 cut(s)	131, 258, 260
FaqI	GGGAC	2 cut(s)	191, 230
FatI	CATG	1 cut(s)	129
FauI	CCCGC	1 cut(s)	55
Fnu4HI	GCNGC	2 cut(s)	26, 95
FokI	GGATG	1 cut(s)	146
Fsp4HI	GCNGC	2 cut(s)	26, 95
FspBI	CTAG	1 cut(s)	271
GlaI	GCGC	1 cut(s)	250
GluI	GCNGC	2 cut(s)	26, 95
HgaI	GACGC	1 cut(s)	119
HhaI	GCGC	1 cut(s)	251
Hin1I	GRCGYC	1 cut(s)	183
Hin1II	CATG	1 cut(s)	133
Hin6I	GCGC	1 cut(s)	249
HinP1I	GCGC	1 cut(s)	249
HinfI	GANTC	3 cut(s)	8, 38, 76
HphI	GGTGA	2 cut(s)	64, 85
Hpy166II	GTNNAC	1 cut(s)	109
Hpy188I	TCNGA	3 cut(s)	43, 84, 124
Hpy8I	GTNNAC	1 cut(s)	109
Hpy99I	CGWCG	2 cut(s)	84, 185
HpyAV	CCTTC	1 cut(s)	193
HpyCH4III	ACNGT	1 cut(s)	158
HpyCH4IV	ACGT	1 cut(s)	183
HpyCH4V	TGCA	3 cut(s)	19, 97, 213
HpyF10VI	GCNNNNNNNGC	2 cut(s)	25, 31
HpyF3I	CTNAG	1 cut(s)	252
HpySE526I	ACGT	1 cut(s)	183
Hsp92I	GRCGYC	1 cut(s)	183
Hsp92II	CATG	1 cut(s)	133
HspAI	GCGC	1 cut(s)	249
KspI	CCGCGG	1 cut(s)	51
Kzo9I	GATC	2 cut(s)	84, 102
LpnPI	CCDG	5 cut(s)	20, 26, 127, 160, 199
Lsp1109I	GCAGC	2 cut(s)	12, 81
LweI	GCATC	1 cut(s)	6
MaeI	CTAG	1 cut(s)	271
MaeII	ACGT	1 cut(s)	183
MalI	GATC	2 cut(s)	86, 104
MboI	GATC	2 cut(s)	84, 102
MboII	GAAGA	3 cut(s)	112, 137, 242
MlyI	GAGTC	3 cut(s)	17, 32, 85
MmeI	TCCRAC	1 cut(s)	62
MnlI	CCTC	7 cut(s)	48, 57, 162, 196, 199, 218, 234
MspA1I	CMGCKG	1 cut(s)	50
MvnI	CGCG	1 cut(s)	50
MwoI	GCNNNNNNNGC	2 cut(s)	25, 31
NdeII	GATC	2 cut(s)	84, 102
NlaIII	CATG	1 cut(s)	133
NlaIV	GGNNCC	1 cut(s)	45
PflFI	GACNNNGTC	1 cut(s)	182
PkrI	GCNGC	2 cut(s)	27, 96
PleI	GAGTC	3 cut(s)	16, 32, 84
PpsI	GAGTC	3 cut(s)	16, 32, 84
PspN4I	GGNNCC	1 cut(s)	45
PspPI	GGNCC	1 cut(s)	43
PstI	CTGCAG	1 cut(s)	99
PsyI	GACNNNGTC	1 cut(s)	182
SacII	CCGCGG	1 cut(s)	51
SatI	GCNGC	2 cut(s)	26, 95
Sau3AI	GATC	2 cut(s)	84, 102
Sau96I	GGNCC	1 cut(s)	43
SchI	GAGTC	3 cut(s)	17, 32, 85
SetI	ASST	4 cut(s)	36, 75, 186, 245
SfaNI	GCATC	1 cut(s)	6
SfcI	CTRYAG	1 cut(s)	95
Sfr303I	CCGCGG	1 cut(s)	51
SgrBI	CCGCGG	1 cut(s)	51
SinI	GGWCC	1 cut(s)	43
SsiI	CCGC	3 cut(s)	48, 50, 191
SspMI	CTAG	1 cut(s)	271
TaaI	ACNGT	1 cut(s)	158
TaiI	ACGT	1 cut(s)	186
TseI	GCWGC	2 cut(s)	25, 94
TspDTI	ATGAA	2 cut(s)	17, 212
Tth111I	GACNNNGTC	1 cut(s)	182
VpaK11BI	GGWCC	1 cut(s)	43
XspI	CTAG	1 cut(s)	271
ZraI	GACGTC	1 cut(s)	184

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.